Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method

BMC Bioinformatics

Volumn 6, Issue , 2005, Pages

  Bagos, Pantelis G ^a   Liakopoulos, Theodore D ^a   Hamodrakas, Stavros J ^a  

^a UNIVERSITY OF ATHENS   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMIC TECHNIQUES; DYNAMIC PROGRAMMING ALGORITHM; GRAM-NEGATIVE BACTERIA; HIDDEN MARKOV MODELS (HMMS); OUTER MEMBRANE PROTEIN; STATISTICAL SIGNIFICANCE; SUPPORT VECTOR MACHINE (SVMS); WEB-BASED APPLICATIONS;

ALGORITHMS; BIOINFORMATICS; BIOLOGICAL MEMBRANES; DATA PROCESSING; HIDDEN MARKOV MODELS; PROTEINS; SUPPORT VECTOR MACHINES; TOPOLOGY;

FORECASTING;

BACTERIAL PROTEIN; BETA BARREL OUTER MEMBRANE PROTEIN; FERRIC HYDROXAMATE UPTAKE PROTEIN COMPONENT A; MALTOPORIN; NEUROENDOCRINE SPECIFIC A PROTEIN; OSMOPORIN; OUTER MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN 32; OUTER MEMBRANE PROTEIN A; OUTER MEMBRANE PROTEIN F; OUTER MEMBRANE PROTEIN LA; OUTER MEMBRANE PROTEIN T; OUTER MEMBRANE PROTEIN X; PHOSPHOPORIN; PORIN; PROTEIN BTUB; PROTEIN FECA; PROTEIN FEPA; PROTEIN NALP; PROTEIN OPCA; PROTEIN PAGP; PROTEIN PRECURSOR; SUCROSE PORIN; UNCLASSIFIED DRUG; MEMBRANE PROTEIN; PROTEIN;

ACCURACY; ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; ARTIFICIAL NEURAL NETWORK; CONTROLLED STUDY; GRAM NEGATIVE BACTERIUM; INTERMETHOD COMPARISON; INTERNET; NONHUMAN; PERFORMANCE; PREDICTION; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; STATISTICAL MODEL; STATISTICAL SIGNIFICANCE; ANALYSIS OF VARIANCE; ARTIFICIAL INTELLIGENCE; BIOLOGY; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER GRAPHICS; COMPUTER LANGUAGE; COMPUTER SIMULATION; EVALUATION STUDY; GENETICS; MARKOV CHAIN; NEISSERIA MENINGITIDIS; PROCEDURES; PROTEIN CONFORMATION; PROTEIN DATABASE; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; REPRODUCIBILITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SOFTWARE; STAPHYLOCOCCUS AUREUS; STATISTICAL ANALYSIS;

NEGIBACTERIA;

ALGORITHMS; ANALYSIS OF VARIANCE; ARTIFICIAL INTELLIGENCE; BACTERIAL OUTER MEMBRANE PROTEINS; COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; COMPUTER SIMULATION; DATA INTERPRETATION, STATISTICAL; DATABASES, PROTEIN; EVALUATION STUDIES AS TOPIC; INTERNET; MARKOV CHAINS; MEMBRANE PROTEINS; MODELS, CHEMICAL; MODELS, MOLECULAR; NEISSERIA MENINGITIDIS; NEURAL NETWORKS (COMPUTER); PROGRAMMING LANGUAGES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; REPRODUCIBILITY OF RESULTS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; STAPHYLOCOCCUS AUREUS;

EID: 13244259253     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-6-7     Document Type: Article

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