-
1
-
-
0029665693
-
The determinants of pKas in proteins
-
doi:10.1021/ bi9601565
-
Antosiewicz J, McCammon JA, GilsonMK(1996) The determinants of pKas in proteins. Biochemistry 35(24):7819-7833. doi:10.1021/ bi9601565
-
(1996)
Biochemistry
, vol.35
, Issue.24
, pp. 7819-7819
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
3
-
-
0036616218
-
The protein data bank
-
DOI 10.1107/S0907444902003451
-
Berman HM, Battistuz T, Bhat TN, Bluhm WF, Bourne PE, Burkhardt K, Feng Z, Gilliland GL, Iype L, Jain S, Fagan P, Marvin J, Padilla D, Ravichandran V, Schneider B, Thanki N, Weissig H, Westbrook JD, Zardecki C (2002) The Protein Data Bank. Acta Crystallogr D Biol Crystallogr 58:899-907. doi: 10.1107/S0907444902003451 (Pubitemid 34653017)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.6
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
Fagan, P.11
Marvin, J.12
Padilla, D.13
Ravichandran, V.14
Schneider, B.15
Thanki, N.16
Weissig, H.17
Westbrook, J.D.18
Zardecki, C.19
-
4
-
-
79951523753
-
Analyzing the components of the free-energy landscape in a calcium selective ion channel by Widom's particle insertion method
-
Boda D, Giri J, Henderson D, Eisenberg B, Gillespie D (2011) Analyzing the components of the free-energy landscape in a calcium selective ion channel by Widom's particle insertion method. J Chem Phys 134:055102-055114
-
(2011)
J Chem Phys
, vol.134
, pp. 055102-055114
-
-
Boda, D.1
Giri, J.2
Henderson, D.3
Eisenberg, B.4
Gillespie, D.5
-
5
-
-
43649092750
-
Volume exclusion in calcium selective channels
-
doi:10.1529/biophysj.107.122796
-
Boda D, Nonner W, Henderson D, Eisenberg B, Gillespie D (2008) Volume exclusion in calcium selective channels. Biophys J 94(9):3486-3496. doi:10.1529/biophysj.107.122796
-
(2008)
Biophys J
, vol.94
, Issue.9
, pp. 3486-3486
-
-
Boda, D.1
Nonner, W.2
Henderson, D.3
Eisenberg, B.4
Gillespie, D.5
-
6
-
-
34548717678
-
Steric selectivity in Na channels arising from protein polarization and mobile side chains
-
DOI 10.1529/biophysj.107.105478
-
Boda D, Nonner W, Valisko M, Henderson D, Eisenberg B, Gillespie D (2007) Steric selectivity in Na channels arising from protein polarization and mobile side chains. Biophys J 93(6):1960-1980. doi:10.1529/biophysj.107.105478 (Pubitemid 47437580)
-
(2007)
Biophysical Journal
, vol.93
, Issue.6
, pp. 1960-1980
-
-
Boda, D.1
Nonner, W.2
Valisko, M.3
Henderson, D.4
Eisenberg, B.5
Gillespie, D.6
Eisenberg, R.S.7
-
7
-
-
66049090534
-
Ionic selectivity in L-type calcium channels by electrostatics and hard-core repulsion
-
doi:10.1085/jgp.200910211
-
Boda D, Valisko M, Henderson D, Eisenberg B, Gillespie D, Nonner W (2009) Ionic selectivity in L-type calcium channels by electrostatics and hard-core repulsion. J Gen Physiol 133(5): 497-509. doi:10.1085/jgp.200910211
-
(2009)
J Gen Physiol
, vol.133
, Issue.5
, pp. 497-497
-
-
Boda, D.1
Valisko, M.2
Henderson, D.3
Eisenberg, B.4
Gillespie, D.5
Nonner, W.6
-
8
-
-
68949144740
-
Statistical determinants of selective ionic complexation: Ions in solvent, transport proteins, and other ''hosts''
-
doi:10.1016/ j.bpj.2009.03.001
-
Bostick DL, Brooks CL 3rd (2009) Statistical determinants of selective ionic complexation: ions in solvent, transport proteins, and other ''hosts''. Biophys J 96(11):4470-4492. doi:10.1016/ j.bpj.2009.03.001
-
(2009)
Biophys J
, vol.96
, Issue.11
, pp. 4470-4492
-
-
Bostick, D.L.1
Brooks III, C.L.2
-
9
-
-
77957166502
-
Competitive entry of sodium and potassium into nanoscale pores
-
doi:10.1021/jp104609d
-
Cannon JJ, Tang D, Hur N, Kim D (2010) Competitive entry of sodium and potassium into nanoscale pores. J Phys Chem B 114(38):12252-12256. doi:10.1021/jp104609d
-
(2010)
J Phys Chem B
, vol.114
, Issue.38
, pp. 12252-12252
-
-
Cannon, J.J.1
Tang, D.2
Hur, N.3
Kim, D.4
-
11
-
-
80052340721
-
Structure and dynamics of the membrane-bound cytochrome P450 2C9
-
doi:10.1371/journal.pcbi.1002152
-
Cojocaru V, Balali-Mood K, Sansom MS, Wade RC (2011) Structure and dynamics of the membrane-bound cytochrome P450 2C9. PLoS Comput Biol 7(8):e1002152. doi:10.1371/journal.pcbi.1002152
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.8
-
-
Cojocaru, V.1
Balali-Mood, K.2
Sansom, M.S.3
Wade, R.C.4
-
12
-
-
33845377446
-
Computation of molecular volume
-
doi:10.1021/ja00291a006
-
Connolly ML (1985) Computation of molecular volume. J Am Chem Soc 107(5):1118-1124. doi:10.1021/ja00291a006
-
(1985)
J Am Chem Soc
, vol.107
, Issue.5
, pp. 1118-1118
-
-
Connolly, M.L.1
-
13
-
-
4243463817
-
Electrostatics in biomolecular structure and dynamics
-
Davis ME, McCammon JA (1990) Electrostatics in biomolecular structure and dynamics. Chem Rev 90:509-521
-
(1990)
Chem Rev
, vol.90
, pp. 509-521
-
-
Davis, M.E.1
McCammon, J.A.2
-
15
-
-
67549112060
-
Gel dynamics
-
Doi M (2009) Gel dynamics. J Phys Soc Jpn 78:052001
-
(2009)
J Phys Soc Jpn
, vol.78
, pp. 052001
-
-
Doi, M.1
-
16
-
-
33747818007
-
CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
DOI 10.1093/nar/gkl282
-
Dundas J, Ouyang Z, Tseng J, Binkowski A, Turpaz Y, Liang J (2006) CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res 34(suppl 2):W116-W118 (Pubitemid 44529746)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
18
-
-
0030247426
-
New perspectives in transport phenomena in electrolytes
-
PII S0378437196000830
-
Durand-Vidal S, Turq P, Bernard O, Treiner C, Blum L (1996) New perspectives in transport phenomena in electrolytes. Phys A 231:123-143 (Pubitemid 126388325)
-
(1996)
Physica A: Statistical Mechanics and its Applications
, vol.231
, Issue.1-3
, pp. 123-143
-
-
Durand-Vidal, S.1
Turq, P.2
Bernard, O.3
Treiner, C.4
Blum, L.5
-
20
-
-
0002052671
-
On the definition and the construction of pockets in macromolecules
-
PII S0166218X98000675
-
Edelsbrunner H, Facello M, Liang J (1998) On the definition and the construction of pockets in macromolecules. Discret Appl Math 88:83-102 (Pubitemid 128379048)
-
(1998)
Discrete Applied Mathematics
, vol.88
, Issue.1-3
, pp. 83-102
-
-
Edelsbrunner, H.1
Facello, M.2
Liang, J.3
-
23
-
-
78650092332
-
Multiple scales in the simulation of ion channels and proteins
-
doi:10.1021/ jp106760t
-
Eisenberg B (2010) Multiple scales in the simulation of ion channels and proteins. J Phys Chem C 114(48):20719-20733. doi:10.1021/ jp106760t
-
(2010)
J Phys Chem C
, vol.114
, Issue.48
, pp. 20719-20719
-
-
Eisenberg, B.1
-
24
-
-
84894692021
-
Crowded charges in ion channels
-
Wiley, New York, also, as arXiv 1009.1786v1001 doi:10.1002/97811 18158715.ch2
-
Eisenberg B (2011a) Crowded charges in ion channels. In: Advances in chemical physics. Wiley, New York, pp 77-223 also available at http://arXiv.org as arXiv 1009.1786v1001 doi:10.1002/97811 18158715.ch2
-
(2011)
Advances in Chemical Physics.
, pp. 77-223
-
-
Eisenberg, B.1
-
26
-
-
79960228913
-
Mass action in ionic solutions
-
doi:10.1016/j.cplett.2011.05.037
-
Eisenberg B (2011c) Mass action in ionic solutions. Chem Phys Lett 511:1-6. doi:10.1016/j.cplett.2011.05.037
-
(2011)
Chem Phys Lett
, vol.511
, pp. 1-1
-
-
Eisenberg, B.1
-
27
-
-
84860300910
-
-
fluctuations and noise letters (in the press): Earlier version 'Living transistors: a physicist's view of ion channels'
-
Eisenberg B (2012) Ions in fluctuating channels: transistors alive. fluctuations and noise letters (in the press): Earlier version 'Living transistors: a physicist's view of ion channels'. Available on http://arxiv.org/ as q-bio/0506016v0506012
-
(2012)
Ions in Fluctuating Channels: Transistors Alive
-
-
Eisenberg, B.1
-
28
-
-
77956944534
-
Energy variational analysis EnVarA of ions in water and channels: Field theory for primitive models of complex ionic fluids
-
Eisenberg B, Hyon Y, Liu C (2010) Energy variational analysis EnVarA of ions in water and channels: field theory for primitive models of complex ionic fluids. J Chem Phys 133:104104
-
(2010)
J Chem Phys
, vol.133
, pp. 104104
-
-
Eisenberg, B.1
Hyon, Y.2
Liu, C.3
-
29
-
-
0025322309
-
Channels as enzymes: Oxymoron and tautology
-
Available on arXiv as
-
Eisenberg RS (1990) Channels as enzymes: oxymoron and tautology. J Membr Biol 115:1-12. Available on arXiv as http://arxiv.org/ abs/1112.2363
-
(1990)
J Membr Biol
, vol.115
, pp. 1-12
-
-
Eisenberg, R.S.1
-
30
-
-
0011753202
-
Atomic biology, electrostatics and ionic channels
-
Elber R (ed), World Scientific, Philadelphia, Published in the physics ArXiv as arXiv: 0807.0715
-
Eisenberg RS (1996a) Atomic biology, electrostatics and ionic channels. In: Elber R (ed) New developments and theoretical studies of proteins, vol 7. World Scientific, Philadelphia, pp 269-357. Published in the physics ArXiv as arXiv:0807.0715
-
(1996)
New Developments and Theoretical Studies of Proteins
, vol.7
, pp. 269-357
-
-
Eisenberg, R.S.1
-
31
-
-
0029876860
-
Computing the field in proteins and channels
-
DOI 10.1007/s002329900026
-
Eisenberg RS (1996b) Computing the field in proteins and channels. J Membr Biol 150:1-25. Also available on http://arxiv.org as arXiv 1009.2857 (Pubitemid 26102439)
-
(1996)
Journal of Membrane Biology
, vol.150
, Issue.1
, pp. 1-25
-
-
Eisenberg, R.S.1
-
32
-
-
0028973249
-
Ca2+ channel selectivity at a single locus for high-affinity Ca2+ interactions
-
DOI 10.1016/0896-6273(95)90100-0
-
Ellinor PT, Yang J, Sather WA, Zhang J-F, Tsien R (1995) Ca2č channel selectivity at a single locus for high-affinity Ca2č interactions. Neuron 15:1121-1132 (Pubitemid 3004044)
-
(1995)
Neuron
, vol.15
, Issue.5
, pp. 1121-1132
-
-
Ellinor, P.T.1
Yang Jian2
Sather, W.A.3
Zhang Ji-Fang4
Tsien, R.W.5
-
34
-
-
84978551486
-
Einfluss der Configuration auf die Wirkung der Enzyme.
-
Fischer E (1894a) Einfluss der Configuration auf die Wirkung der Enzyme. Berichte der deutschen chemischen Gesellschaft 27:2985-2993
-
(1894)
Berichte der Deutschen Chemischen Gesellschaft
, vol.27
, pp. 2985-2993
-
-
Fischer, E.1
-
36
-
-
78751661566
-
Monoprotic mineral acids analyzed by the smaller-ion shell model of strong electrolyte solutions
-
doi:10.1021/jp108997f
-
Fraenkel D (2010a) Monoprotic mineral acids analyzed by the smaller-ion shell model of strong electrolyte solutions. J Phys Chem B 115(3):557-568. doi:10.1021/jp108997f
-
(2010)
J Phys Chem B
, vol.115
, Issue.3
, pp. 557-557
-
-
Fraenkel, D.1
-
37
-
-
77954057868
-
Simplified electrostatic model for the thermodynamic excess potentials of binary strong electrolyte solutions with size-dissimilar ions
-
Fraenkel D (2010b) Simplified electrostatic model for the thermodynamic excess potentials of binary strong electrolyte solutions with size-dissimilar ions. Mol Phys 108(11):1435-1466
-
(2010)
Mol Phys
, vol.108
, Issue.11
, pp. 1435-1466
-
-
Fraenkel, D.1
-
38
-
-
0000958150
-
Electrolyte solutions at equilibrium
-
doi:10.1146/annurev.pc.32.100181.001143
-
Friedman HL (1981) Electrolyte solutions at equilibrium. Annu Rev Phys Chem 32(1):179-204. doi:10.1146/annurev.pc.32.100181.001143
-
(1981)
Annu Rev Phys Chem
, vol.32
, Issue.1
, pp. 179-179
-
-
Friedman, H.L.1
-
40
-
-
34347328407
-
Conductance of strong electrolytes at finite dilutions
-
Fuoss RM, Onsager L (1955) Conductance of strong electrolytes at finite dilutions. Proc Nat Acad Sci USA 41(5):274-283
-
(1955)
Proc Nat Acad Sci USA
, vol.41
, Issue.5
, pp. 274-283
-
-
Fuoss, R.M.1
Onsager, L.2
-
41
-
-
70449097578
-
Reinterpreting the anomalous mole fraction effect. The ryanodine receptor case study
-
Gillespie D, Giri J, Fill M (2009) Reinterpreting the anomalous mole fraction effect. The ryanodine receptor case study. Biophys J 97(8):2212-2221
-
(2009)
Biophys J
, vol.97
, Issue.8
, pp. 2212-2221
-
-
Gillespie, D.1
Giri, J.2
Fill, M.3
-
42
-
-
27544501461
-
Understanding nature's catalytic toolkit
-
DOI 10.1016/j.tibs.2005.09.006, PII S0968000405002756
-
Gutteridge A, Thornton JM (2005) Understanding nature's catalytic toolkit. Trends Biochem Sci 30(11):622-629. doi:10.1016/ j.tibs.2005.09.006 (Pubitemid 41540082)
-
(2005)
Trends in Biochemical Sciences
, vol.30
, Issue.11
, pp. 622-629
-
-
Gutteridge, A.1
Thornton, J.M.2
-
44
-
-
0004292668
-
-
reprint, McGraw Hill reprinted by Dover, New York
-
Helfferich F (1962 (1995 reprint)) Ion exchange. McGraw Hill reprinted by Dover, New York
-
(1962)
Ion Exchange.
-
-
Helfferich, F.1
-
46
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B, Nichols A (1995) Classical electrostatics in biology and chemistry. Science 268:1144-1149
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nichols, A.2
-
48
-
-
77952117272
-
The behavior of ions near a charged wall-dependence on ion size, concentration, and surface charge
-
doi:10.1021/ jp9108865
-
Howard JJ, Perkyns JS, Pettitt BM (2010) The behavior of ions near a charged wall-dependence on ion size, concentration, and surface charge. J Phys Chem B 114(18):6074-6083. doi:10.1021/ jp9108865
-
(2010)
J Phys Chem B
, vol.114
, Issue.18
, pp. 6074-6074
-
-
Howard, J.J.1
Perkyns, J.S.2
Pettitt, B.M.3
-
52
-
-
0001417006
-
Conductance of electrolyte solutions
-
Conway BE, Bockris JOM, Yaeger E (eds), Plenum, New York
-
Justice J-C (1983) Conductance of electrolyte solutions. In: Conway BE, Bockris JOM, Yaeger E (eds) Comprehensive treatise of electrochemistry. Thermondynbamic and transport properties of aqueous and molten electrolytes, vol 5. Plenum, New York, pp 223-338
-
(1983)
Comprehensive Treatise of Electrochemistry. Thermondynbamic and Transport Properties of Aqueous and Molten Electrolytes
, vol.5
, pp. 223-338
-
-
Justice, J.-C.1
-
53
-
-
77955977693
-
Aqueous alkali halide solutions: Can osmotic coefficients be explained on the basis of the ionic sizes alone?
-
Kalyuzhnyi YV, Vlachy V, Dill KA (2010) Aqueous alkali halide solutions: can osmotic coefficients be explained on the basis of the ionic sizes aloneč Phys Chem Chem Phys 12(23):6260-6266
-
(2010)
Phys Chem Chem Phys
, vol.12
, Issue.23
, pp. 6260-6266
-
-
Kalyuzhnyi, Y.V.1
Vlachy, V.2
Dill, K.A.3
-
54
-
-
0034602401
-
Architecture of Ca(2č) channel pore-lining segments revealed by covalent modification of substituted cysteines
-
doi:10.1074/jbc.M005569200
-
Koch SE, Bodi I, Schwartz A, Varadi G (2000) Architecture of Ca(2č) channel pore-lining segments revealed by covalent modification of substituted cysteines. J Biol Chem 275(44): 34493-34500. doi:10.1074/jbc. M005569200
-
(2000)
J Biol Chem
, vol.275
, Issue.44
, pp. 34493-34493
-
-
Koch, S.E.1
Bodi, I.2
Schwartz, A.3
Varadi, G.4
-
55
-
-
34249806047
-
Preferential solvation in urea solutions at different concentrations: Properties from simulation studies
-
DOI 10.1021/jp067659x
-
Kokubo H, Pettitt BM (2007) Preferential solvation in urea solutions at different concentrations: properties from simulation studies. J Phys Chem B 111(19):5233-5242. doi:10.1021/jp067659x (Pubitemid 46854511)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.19
, pp. 5233-5242
-
-
Kokubo, H.1
Pettitt, B.M.2
-
56
-
-
36549078761
-
Molecular basis of the apparent near ideality of urea solutions
-
DOI 10.1529/biophysj.107.114181
-
Kokubo H, Rosgen J, Bolen DW, Pettitt BM (2007) Molecular basis of the apparent near ideality of urea solutions. Biophys J 93(10):3392-3407. doi:10.1529/biophysj.107.114181 (Pubitemid 350190804)
-
(2007)
Biophysical Journal
, vol.93
, Issue.10
, pp. 3392-3407
-
-
Kokubo, H.1
Rosgen, J.2
Bolen, D.W.3
Pettitt, B.M.4
-
58
-
-
34250323468
-
Double-layer in ionic liquids: Paradigm change?
-
DOI 10.1021/jp067857o
-
Kornyshev AA (2007) Double-layer in ionic liquids: paradigm changeč J Phys Chem B 111(20):5545-5557 (Pubitemid 46910812)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.20
, pp. 5545-5557
-
-
Kornyshev, A.A.1
-
59
-
-
84967647241
-
-
World Scientific Singapore, Singapore
-
Kunz W (2009) Specific ion effects. World Scientific Singapore, Singapore
-
(2009)
Specific Ion Effects
-
-
Kunz, W.1
-
62
-
-
67650721206
-
Continuum electrostatics for ionic solutions with nonuniform ionic sizes
-
Li B (2009) Continuum electrostatics for ionic solutions with nonuniform ionic sizes. Nonlinearity 22(4):811
-
(2009)
Nonlinearity
, vol.22
, Issue.4
, pp. 811
-
-
Li, B.1
-
63
-
-
0034901412
-
Are proteins well-packed?
-
Liang J, Dill KA (2001) Are proteins well-packedč Biophys J 81(2):751-766 (Pubitemid 32721450)
-
(2001)
Biophysical Journal
, vol.81
, Issue.2
, pp. 751-766
-
-
Liang, J.1
Dill, K.A.2
-
64
-
-
0031687653
-
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
-
Liang J, Edelsbrunner H, Woodward C (1998) Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design. Protein Sci 7:1884-1897 (Pubitemid 28432430)
-
(1998)
Protein Science
, vol.7
, Issue.9
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
66
-
-
85144784957
-
An introduction of elastic complex fluids: An energetic variational approach
-
Hou TY, Liu C, Liu JG (eds), World Scientific Publishing Company, Singapore
-
Liu C (2009) An introduction of elastic complex fluids: an energetic variational approach. In: Hou TY, Liu C, Liu JG (eds) Multi-scale phenomena in complex fluids: modeling, analysis and numerical simulations. World Scientific Publishing Company, Singapore
-
(2009)
Multi-scale Phenomena in Complex Fluids: Modeling, Analysis and Numerical Simulations.
-
-
Liu, C.1
-
67
-
-
0034634393
-
How do substrates enter and products exit the buried active site of cytochrome P450camč 1. Random expulsion molecular dynamics investigation of ligand access channels and mechanisms
-
doi:10.1006/jmbi.2000.4154
-
Ludemann SK, Lounnas V, Wade RC (2000a) How do substrates enter and products exit the buried active site of cytochrome P450camč 1. Random expulsion molecular dynamics investigation of ligand access channels and mechanisms. J Mol Biol 303(5):797-811. doi:10.1006/jmbi.2000.4154
-
(2000)
J Mol Biol
, vol.303
, Issue.5
, pp. 797-797
-
-
Ludemann, S.K.1
Lounnas, V.2
Wade, R.C.3
-
68
-
-
0034634391
-
How do substrates enter and products exit the buried active site of cytochrome P450camč 2. Steered molecular dynamics and adiabatic mapping of substrate pathways
-
doi: 10.1006/jmbi.2000.4155
-
Ludemann SK, Lounnas V, Wade RC (2000b) How do substrates enter and products exit the buried active site of cytochrome P450camč 2. Steered molecular dynamics and adiabatic mapping of substrate pathways. J Mol Biol 303(5):813-830. doi: 10.1006/jmbi.2000.4155
-
(2000)
J Mol Biol
, vol.303
, Issue.5
, pp. 813-813
-
-
Ludemann, S.K.1
Lounnas, V.2
Wade, R.C.3
-
70
-
-
0033798707
-
Ion channel selectivity using an electric stew
-
McCleskey EW (2000) Ion channel selectivity using an electric stew. Biophys J 79(4):1691-1692
-
(2000)
Biophys J
, vol.79
, Issue.4
, pp. 1691-1692
-
-
McCleskey, E.W.1
-
71
-
-
16344382423
-
2+ channels
-
DOI 10.1529/biophysj.104.041384
-
Miedema H, Meter-Arkema A, Wierenga J, Tang J, Eisenberg B, Nonner W, Hektor H, Gillespie D, Meijberg W (2004) Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels. Biophys J 87(5):3137-3147 (Pubitemid 40468571)
-
(2004)
Biophysical Journal
, vol.87
, Issue.5
, pp. 3137-3147
-
-
Miedema, H.1
Meter-Arkema, A.2
Wierenga, J.3
Tang, J.4
Eisenberg, B.5
Nonner, W.6
Hektor, H.7
Gillespie, D.8
Meijberg, W.9
-
72
-
-
33845393202
-
2+ selectivity of a chemically modified OmpF with reduced pore volume
-
DOI 10.1529/biophysj.106.087114
-
Miedema H, Vrouenraets M, Wierenga J, Gillespie D, Eisenberg B, Meijberg W, Nonner W (2006) Ca2+ selectivity of a chemically modified OmpF with reduced pore volume. Biophys J 91(12):4392-4400. doi:10.1529/biophysj.106.087114 (Pubitemid 44904226)
-
(2006)
Biophysical Journal
, vol.91
, Issue.12
, pp. 4392-4400
-
-
Miedema, H.1
Vrouenraets, M.2
Wierenga, J.3
Gillespie, D.4
Eisenberg, B.5
Meijberg, W.6
Nonner, W.7
-
73
-
-
0035850347
-
Ion accumulation in a biological calcium channel: Effects of solvent and confining pressure
-
DOI 10.1021/jp010562k
-
Nonner W, Gillespie D, Henderson D, Eisenberg B (2001) Ion accumulation in a biological calcium channel: effects of solvent and confining pressure. J Phys Chem B 105:6427-6436 (Pubitemid 35339068)
-
(2001)
Journal of Physical Chemistry B
, vol.105
, Issue.27
, pp. 6427-6436
-
-
Nonner, W.1
Gillespie, D.2
Henderson, D.3
Eisenberg, B.4
-
74
-
-
33846380189
-
What common structural features and variations of mammalian P450s are known to date?
-
DOI 10.1016/j.bbagen.2006.09.013, PII S0304416506002881
-
Otyepka M, Skopalik J, Anzenbacherova E, Anzenbacher P (2007a) What common structural features and variations of mammalian P450 s are known to dateč Biochim Biophys Acta 1770(3):376-389. doi:10.1016/j.bbagen.2006.09. 013 (Pubitemid 46136748)
-
(2007)
Biochimica et Biophysica Acta - General Subjects
, vol.1770
, Issue.3
, pp. 376-389
-
-
Otyepka, M.1
Skopalik, J.2
Anzenbacherova, E.3
Anzenbacher, P.4
-
75
-
-
33846380189
-
What common structural features and variations of mammalian P450s are known to date?
-
DOI 10.1016/j.bbagen.2006.09.013, PII S0304416506002881
-
Otyepka M, Skopalík J, Anzenbacherová E, Anzenbacher P (2007b) What common structural features and variations of mammalian P450s are known to dateč Biochimica et Biophysica Acta (BBA)-Gen Subj 1770(3):376-389. doi:10.1016/j.bbagen.2006.09.013 (Pubitemid 46136748)
-
(2007)
Biochimica et Biophysica Acta - General Subjects
, vol.1770
, Issue.3
, pp. 376-389
-
-
Otyepka, M.1
Skopalik, J.2
Anzenbacherova, E.3
Anzenbacher, P.4
-
76
-
-
84987425681
-
Thermodynamic properties of aqueous solutions of mixed electrolytes: A new mixing rule
-
Patwardhan VS, Kumar A (1993) Thermodynamic properties of aqueous solutions of mixed electrolytes: A new mixing rule. AIChE J 39(4):711-714
-
(1993)
AIChE J
, vol.39
, Issue.4
, pp. 711-714
-
-
Patwardhan, V.S.1
Kumar, A.2
-
78
-
-
0004047722
-
-
3rd edn. McGraw Hill, New York
-
Pitzer KS (1995) Thermodynamics, 3rd edn. McGraw Hill, New York
-
(1995)
Thermodynamics
-
-
Pitzer, K.S.1
-
80
-
-
0345864027
-
The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
Porter CT, Bartlett GJ, Thornton JM (2004) The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res 32(suppl 1):D129-D133 (Pubitemid 38081621)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
82
-
-
69949096731
-
Variation of protein binding cavity volume and ligand volume in protein-ligand complexes
-
doi:10.1016/j.bmcl.2009.07.140
-
Saranya N, Selvaraj S (2009) Variation of protein binding cavity volume and ligand volume in protein-ligand complexes. Bioorg Med Chem Lett 19(19):5769-5772. doi:10.1016/j.bmcl.2009.07.140
-
(2009)
Bioorg Med Chem Lett
, vol.19
, Issue.19
, pp. 5769-5769
-
-
Saranya, N.1
Selvaraj, S.2
-
83
-
-
0038170314
-
Permeation and selectivity in calcium channels
-
DOI 10.1146/annurev.physiol.65.092101.142345
-
Sather WA, McCleskey EW (2003) Permeation and selectivity in calcium channels. Annu Rev Physiol 65:133-159 (Pubitemid 38249150)
-
(2003)
Annual Review of Physiology
, vol.65
, pp. 133-159
-
-
Sather, W.A.1
McCleskey, E.W.2
-
84
-
-
0003760238
-
Enzyme kinetics: Behavior and analysis of rapid equilibrium and steady-state enzyme systems
-
Systems edn. Wiley, Interscience, New York
-
Segel IH (1993) Enzyme kinetics: behavior and analysis of rapid equilibrium and steady-state enzyme systems. Enzyme kinetics: behavior and analysis of rapid equilibrium and steady-state enzyme, Systems edn. Wiley, Interscience, New York
-
(1993)
Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-state Enzyme
-
-
Segel, I.H.1
-
85
-
-
77956938843
-
Onsager principle and electrorheological fluid dynamics
-
doi: 10.1143/PTPS.175.131
-
Sheng P, Zhang J, Liu C (2008) Onsager principle and electrorheological fluid dynamics. Prog Theoret Phys 175:131-143. doi: 10.1143/PTPS.175.131
-
(2008)
Prog Theoret Phys
, vol.175
, pp. 131-131
-
-
Sheng, P.1
Zhang, J.2
Liu, C.3
-
86
-
-
77951207820
-
Increasing selectivity in comprehensive three-dimensional gas chromatography via an ionic liquid stationary phase column in one dimension
-
Siegler WC, Crank JA, Armstrong DW, Synovec RE (2010) Increasing selectivity in comprehensive three-dimensional gas chromatography via an ionic liquid stationary phase column in one dimension. J Chromatogr A 1217(18):3144-3149
-
(2010)
J Chromatogr A
, vol.1217
, Issue.18
, pp. 3144-3149
-
-
Siegler, W.C.1
Crank, J.A.2
Armstrong, D.W.3
Synovec, R.E.4
-
87
-
-
77951694718
-
Structural and dynamical properties of ionic liquids: Competing influences of molecular properties
-
doi:10.1063/1.3380830
-
Spohr HV, Patey GN (2010) Structural and dynamical properties of ionic liquids: competing influences of molecular properties. J Chem Phys 132(15):154504-154512. doi:10.1063/1.3380830
-
(2010)
J Chem Phys
, vol.132
, Issue.15
, pp. 154504-154504
-
-
Spohr, H.V.1
Patey, G.N.2
-
89
-
-
33947461074
-
Theory of protein titration curves. II. Calculations for simple models at low ionic strength
-
doi:10.1021/ja01577a002
-
Tanford C (1957) Theory of protein titration curves. II. Calculations for simple models at low ionic strength. J Am Chem Soc 79(20):5340-5347. doi:10.1021/ja01577a002
-
(1957)
J Am Chem Soc
, vol.79
, Issue.20
, pp. 5340-5340
-
-
Tanford, C.1
-
90
-
-
33947468892
-
Theory of protein titration curves. I. General equations for impenetrable spheres
-
Tanford C, Kirkwood JG (1957) Theory of protein titration curves. I. General equations for impenetrable spheres. J Am Chem Soc 79:5333-5339
-
(1957)
J Am Chem Soc
, vol.79
, pp. 5333-5339
-
-
Tanford, C.1
Kirkwood, J.G.2
-
91
-
-
0015520587
-
Interpretation of protein titration curves. application to lysozyme
-
doi: 10.1021/bi00761a029
-
Tanford C, Roxby R (1972) Interpretation of protein titration curves. application to lysozyme. Biochemistry 11(11):2192-2198. doi: 10.1021/bi00761a029
-
(1972)
Biochemistry
, vol.11
, Issue.11
, pp. 2192-2192
-
-
Tanford, C.1
Roxby, R.2
-
92
-
-
0028470228
-
Enzyme nomenclature. Recommendations 1992
-
doi:10.1111/j.1432-1033.1994.tb18960.x
-
Tipton KF (1994) Enzyme nomenclature. Recommendations 1992. Eur J Biochem 223(1):1-5. doi:10.1111/j.1432-1033.1994.tb18960.x
-
(1994)
Eur J Biochem
, vol.223
, Issue.1
, pp. 1-1
-
-
Tipton, K.F.1
-
93
-
-
1842493977
-
Electrical double layers: 4. limitations of the Gouy-Chapman Theory
-
Torrie GM, Valleau A (1982) Electrical double layers: 4. limitations of the Gouy-Chapman Theory. J Phys Chem 86:3251-3257
-
(1982)
J Phys Chem
, vol.86
, pp. 3251-3257
-
-
Torrie, G.M.1
Valleau, A.2
-
95
-
-
78649301565
-
Multibody effects in ion binding and selectivity
-
doi:10.1016/j.bpj.2010.09.019
-
Varma S, Rempe SB (2010) Multibody effects in ion binding and selectivity. Biophys J 99(10):3394-3401. doi:10.1016/j.bpj.2010.09.019
-
(2010)
Biophys J
, vol.99
, Issue.10
, pp. 3394-3394
-
-
Varma, S.1
Rempe, S.B.2
-
96
-
-
79958056648
-
Perspectives on: Ion selectivity: Design principles for Kč selectivity in membrane transport
-
doi:10.1085/jgp.2010 10579
-
Varma S, Rogers DM, Pratt LR, Rempe SB (2011) Perspectives on: ion selectivity: design principles for Kč selectivity in membrane transport. J Gen Physiol 137(6):479-488. doi:10.1085/jgp.2010 10579
-
(2011)
J Gen Physiol
, vol.137
, Issue.6
, pp. 479-488
-
-
Varma, S.1
Rogers, D.M.2
Pratt, L.R.3
Rempe, S.B.4
-
97
-
-
78049272342
-
The nonmonotonic concentration dependence of the mean activity coefficient of electrolytes is a result of a balance between solvation and ion-ion correlations
-
doi:10.1063/1.3489418
-
Vincze J, Valisko M, Boda D (2010) The nonmonotonic concentration dependence of the mean activity coefficient of electrolytes is a result of a balance between solvation and ion-ion correlations. J Chem Phys 133(15):154507-154508. doi:10.1063/1.3489418
-
(2010)
J Chem Phys
, vol.133
, Issue.15
, pp. 154507-154507
-
-
Vincze, J.1
Valisko, M.2
Boda, D.3
-
99
-
-
33645753093
-
Chemical modification of the bacterial porin OmpF: Gain of selectivity by volume reduction
-
Vrouenraets M, Wierenga J, Meijberg W, Miedema H (2006) Chemical modification of the bacterial porin OmpF: gain of selectivity by volume reduction. Biophys J 90(4):1202-1211
-
(2006)
Biophys J
, vol.90
, Issue.4
, pp. 1202-1211
-
-
Vrouenraets, M.1
Wierenga, J.2
Meijberg, W.3
Miedema, H.4
-
100
-
-
0019889036
-
Calculations of enzymatic reactions: Calculations of pKa, proton transfer reactions, and general acid catalysis reactions in enzymes
-
Warshel A (1981) Calculations of enzymatic reactions: calculations of pKa, proton transfer reactions, and general acid catalysis reactions in enzymes. Biochemistry 20(11):3167-3177
-
(1981)
Biochemistry
, vol.20
, Issue.11
, pp. 3167-3177
-
-
Warshel, A.1
-
101
-
-
0021476470
-
Calculations of electrostatic interactions in biological systems and in solutions
-
Warshel A, Russell ST (1984) Calculations of electrostatic interactions in biological systems and in solutions. Q Rev Biophys 17:283-422
-
(1984)
Q Rev Biophys
, vol.17
, pp. 283-422
-
-
Warshel, A.1
Russell, S.T.2
-
102
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
DOI 10.1021/cr0503106
-
Warshel A, Sharma PK, Kato M, Xiang Y, Liu H, Olsson MHM (2006) Electrostatic basis for enzyme catalysis. Chem Rev 106(8):3210-3235. doi:10.1021/cr0503106 (Pubitemid 44376933)
-
(2006)
Chemical Reviews
, vol.106
, Issue.8
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
-
103
-
-
0034644713
-
Side chain orientation in the selectivity filter of a voltage-gated Ca2č channel
-
Wu XS, Edwards HD, Sather WA (2000) Side chain orientation in the selectivity filter of a voltage-gated Ca2č channel. J Biol Chem 275:31778-31785
-
(2000)
J Biol Chem
, vol.275
, pp. 31778-31785
-
-
Wu, X.S.1
Edwards, H.D.2
Sather, W.A.3
-
104
-
-
0027340610
-
2+ channels
-
DOI 10.1038/366158a0
-
Yang J, Ellinor PT, Sather WA, Zhang JF, Tsien R (1993) Molecular determinants of Ca2č selectivity and ion permeation in L-type Ca2č channels. Nature 366:158-161 (Pubitemid 23351820)
-
(1993)
Nature
, vol.366
, Issue.6451
, pp. 158-161
-
-
Yang, J.1
Ellinor, P.T.2
Sather, W.A.3
Zhang, J.-F.4
Tsien, R.W.5
-
105
-
-
67649205728
-
Hydration number, topological control, and ion selectivity
-
doi:10.1021/jp901 233v
-
Yu H, Noskov SY, Roux B (2009) Hydration number, topological control, and ion selectivity. J Phys Chem. doi:10.1021/jp901 233v
-
(2009)
J Phys Chem.
-
-
Yu, H.1
Noskov, S.Y.2
Roux, B.3
-
107
-
-
77956931884
-
Molecular dynamics in physiological solutions: Force fields, alkali metal ions, and ionic strength
-
doi:10.1021/ct9006579
-
Zhang C, Raugei S, Eisenberg B, Carloni P (2010) Molecular dynamics in physiological solutions: force fields, alkali metal ions, and ionic strength. J Chem Theory Comput 6(7):2167-2175. doi:10.1021/ct9006579
-
(2010)
J Chem Theory Comput
, vol.6
, Issue.7
, pp. 2167-2167
-
-
Zhang, C.1
Raugei, S.2
Eisenberg, B.3
Carloni, P.4
|