메뉴 건너뛰기




Volumn 88, Issue 1-3, 1998, Pages 83-102

On the definition and the construction of pockets in macromolecules

Author keywords

Algorithms; Alpha complexes; Combinatorial geometry and topology; Delaunay simplices; Docking; Molecular biology; Molecular modeling; Space filling and solvent accessible models; Voronoi cells

Indexed keywords


EID: 0002052671     PISSN: 0166218X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-218X(98)00067-5     Document Type: Article
Times cited : (167)

References (24)
  • 1
    • 21144463023 scopus 로고
    • Representing geometric structures in d dimensions: Topology and order
    • E. Brisson, Representing geometric structures in d dimensions: topology and order, Discrete Comput. Geom. 9 (1993) 387-426.
    • (1993) Discrete Comput. Geom. , vol.9 , pp. 387-426
    • Brisson, E.1
  • 2
    • 0026535070 scopus 로고
    • Protein solvation in allosteric regulation: A water effect on hemoglobin
    • M.F. Colombo, D.C. Rau, V.A. Parsegian, Protein solvation in allosteric regulation: A water effect on hemoglobin, Science 256 (1992) 655-659.
    • (1992) Science , vol.256 , pp. 655-659
    • Colombo, M.F.1    Rau, D.C.2    Parsegian, V.A.3
  • 3
    • 0026001872 scopus 로고
    • Molecular interstitial skeleton
    • T.H. Connolly, Molecular interstitial skeleton, Comput. Chem. 15 (1991) 37-45.
    • (1991) Comput. Chem. , vol.15 , pp. 37-45
    • Connolly, T.H.1
  • 7
    • 0024776810 scopus 로고
    • Primitives for the manipulation of three-dimensional subdivisions
    • D.P. Dobkin, M.J. Laszlo, Primitives for the manipulation of three-dimensional subdivisions, Algorithmica 4 (1989) 3-32.
    • (1989) Algorithmica , vol.4 , pp. 3-32
    • Dobkin, D.P.1    Laszlo, M.J.2
  • 8
    • 51249162203 scopus 로고
    • The union of balls and its dual shape
    • I. Bárány, J. Pach (Eds.), László Fejes Tóth Festschrift
    • H. Edelsbrunner, The union of balls and its dual shape, in: I. Bárány, J. Pach (Eds.), László Fejes Tóth Festschrift, Discrete Comput. Geom. 13 (1995), 415-440.
    • (1995) Discrete Comput. Geom. , vol.13 , pp. 415-440
    • Edelsbrunner, H.1
  • 9
  • 12
    • 0025214884 scopus 로고
    • Simulation of simplicity: A technique to cope with degenerate cases in geometric algorithms
    • H. Edelsbrunner, E.P. Mücke, Simulation of Simplicity: a technique to cope with degenerate cases in geometric algorithms, ACM Trans. Graphics 9 (1990) 66-104.
    • (1990) ACM Trans. Graphics , vol.9 , pp. 66-104
    • Edelsbrunner, H.1    Mücke, E.P.2
  • 14
    • 0031474158 scopus 로고    scopus 로고
    • Chemical complementation identifies a proton acceptor for redox-active tyrosin D in photosystem II
    • S. Kim, J. Liang, B.A. Barry, Chemical complementation identifies a proton acceptor for redox-active tyrosin D in photosystem II, Proc. Natl. Acad. Sci. USA 94 (1997) 14406-14411.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 14406-14411
    • Kim, S.1    Liang, J.2    Barry, B.A.3
  • 15
    • 0015222647 scopus 로고
    • The interpretation of protein structures: Estimation of static accessibility
    • B. Lee, F.M. Richards, The interpretation of protein structures: estimation of static accessibility, J. Mol. Biol. 55 (1971) 379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 16
    • 85043053140 scopus 로고    scopus 로고
    • Anatomy of protein pockets and cavities: Measurement of binding sites and implications for ligand design
    • in press
    • J. Liang, H. Edelsbrunner, C. Woodward, Anatomy of protein pockets and cavities: measurement of binding sites and implications for ligand design, Protein Science, in press.
    • Protein Science
    • Liang, J.1    Edelsbrunner, H.2    Woodward, C.3
  • 17
    • 0031852809 scopus 로고    scopus 로고
    • Mechanisms of coagulation factor Xa inhibition by antithrombin: Correlation between hydration structures and water transfer during reactive loop insertion
    • J. Liang, M.P. McGee, Mechanisms of coagulation factor Xa inhibition by antithrombin: Correlation between hydration structures and water transfer during reactive loop insertion, Biophys. J. 75 (1998) 573-582.
    • (1998) Biophys. J. , vol.75 , pp. 573-582
    • Liang, J.1    McGee, M.P.2
  • 19
    • 85032388963 scopus 로고
    • Efficient algorithms for local and global accessibility shading
    • G. Miller, Efficient algorithms for local and global accessibility shading, Comput. Graphics 28 (1994) 319-326.
    • (1994) Comput. Graphics , vol.28 , pp. 319-326
    • Miller, G.1
  • 20
    • 0017429069 scopus 로고
    • Areas, volumes, packing, and protein structures
    • F.M. Richards, Areas, volumes, packing, and protein structures, Ann. Rev. Biophys. Bioeng. 6 (1977) 151-176.
    • (1977) Ann. Rev. Biophys. Bioeng. , vol.6 , pp. 151-176
    • Richards, F.M.1
  • 22
    • 0029836953 scopus 로고    scopus 로고
    • Discovering high-affinity ligands for proteins: Sar by nmr
    • S.B. Shuker, P.J. Hajduk, R.P. Meadows, S.W. Fesik, Discovering high-affinity ligands for proteins: Sar by nmr, Science 274 (1996) 1531-1534.
    • (1996) Science , vol.274 , pp. 1531-1534
    • Shuker, S.B.1    Hajduk, P.J.2    Meadows, R.P.3    Fesik, S.W.4
  • 24
    • 0000734331 scopus 로고
    • Nouvelles applications des paramètres continus à las théorie des formes quadratiques
    • G. Voronoi, Nouvelles applications des paramètres continus à las théorie des formes quadratiques, J. Reine Angew. Math. 133 (1907) 97-178.
    • (1907) J. Reine Angew. Math. , vol.133 , pp. 97-178
    • Voronoi, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.