-
1
-
-
13444304173
-
Chance caught on the wing: Cis-regulatory evolution and the origin of pigment patterns in Drosophila
-
Gompel, N., B. Prud'homme, P.J. Wittkopp, V.A. Kassner, and S.B. Carroll (2005) Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature, 433(7025): p. 481-7.
-
(2005)
Nature
, vol.433
, Issue.7025
, pp. 481-487
-
-
Gompel, N.1
Prud'Homme, B.2
Wittkopp, P.J.3
Kassner, V.A.4
Carroll, S.B.5
-
2
-
-
69549110251
-
On the origin and spread of an adaptive allele in deer mice
-
Linnen, C.R., E.P. Kingsley, J.D. Jensen, and H.E. Hoekstra (2009) On the origin and spread of an adaptive allele in deer mice. Science, 325 (5944): p. 1095-8.
-
(2009)
Science
, vol.325
, Issue.5944
, pp. 1095-1098
-
-
Linnen, C.R.1
Kingsley, E.P.2
Jensen, J.D.3
Hoekstra, H.E.4
-
3
-
-
33745199150
-
Integrating genetic and gene expression data: Application to cardiovascular and metabolic traits in mice
-
Drake, T.A., E.E. Schadt, and A.J. Lusis (2006) Integrating genetic and gene expression data: Application to cardiovascular and metabolic traits in mice. Mamm Genome, 17(6): p. 466-79.
-
(2006)
Mamm Genome
, vol.17
, Issue.6
, pp. 466-479
-
-
Drake, T.A.1
Schadt, E.E.2
Lusis, A.J.3
-
4
-
-
41349095280
-
Genetics of gene expression and its effect on disease
-
Emilsson, V., G. Thorleifsson, B. Zhang, A.S. Leonardson, F. Zink, J. Zhu, S. Carlson, A. Helgason, G.B. Walters, S. Gunnarsdottir, M. Mouy, V. Steinthorsdottir, G.H. Eiriksdottir, G. Bjornsdottir, I. Reynisdottir, D. Gudbjartsson, A. Helgadottir, A. Jonasdottir, A. Jonasdottir, U. Styrkarsdottir, S. Gretarsdottir, K.P. Magnusson, H. Stefansson, R. Fossdal, K. Kristjansson, H.G. Gislason, T. Stefansson, B. G. Leifsson, U. Thorsteinsdottir, J.R. Lamb, J. R. Gulcher, M.L. Reitman, A. Kong, E.E. Schadt, and K. Stefansson (2008) Genetics of gene expression and its effect on disease. Nature, 452(7186): p. 423-8.
-
(2008)
Nature
, vol.452
, Issue.7186
, pp. 423-428
-
-
Emilsson, V.1
Thorleifsson, G.2
Zhang, B.3
Leonardson, A.S.4
Zink, F.5
Zhu, J.6
Carlson, S.7
Helgason, A.8
Walters, G.B.9
Gunnarsdottirn, S.I.10
Mouy, M.11
Steinthorsdottir, V.12
Eiriksdottir, G.H.13
Reynisdottir, G.B.I.14
Gudbjartsson, D.15
Helgadottir, A.16
Jonasdottir, A.17
Jonasdottir, A.18
Styrkarsdottir, U.19
Gretarsdottir, S.20
Magnusson, K.P.21
Stefansson, H.22
Fossdal, R.23
Kristjansson, K.24
Gislason, H.G.25
Stefansson, T.26
Leifsson, B.G.27
Thorsteinsdottir, U.28
Lamb, J.R.29
Gulcher, J.R.30
Reitman, M.L.31
Kong, A.32
Schadt, E.E.33
Stefansson, K.34
more..
-
5
-
-
19844365733
-
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
-
Gilad, Y., S.A. Rifkin, P. Bertone, M. Gerstein, and K.P.White (2005) Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res, 15(5): p. 674-80.
-
(2005)
Genome Res.
, vol.15
, Issue.5
, pp. 674-680
-
-
Gilad, Y.1
Rifkin, S.A.2
Bertone, P.3
Gerstein, M.4
White, K.P.5
-
6
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., B.A. Williams, K. McCue, L. Schaeffer, and B. Wold (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods, 5(7): p. 621-628.
-
(2008)
Nat. Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
7
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
Sultan, M., M.H. Schulz, H. Richard, A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, and M.L. Yaspo (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science, 321(5891): p. 956-60.
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
Magen, A.4
Klingenhoff, A.5
Scherf, M.6
Seifert, M.7
Borodina, T.8
Soldatov, A.9
Parkhomchuk, D.10
Schmidt, D.11
O'Keeffe, S.12
Haas, S.13
Vingron, M.14
Lehrach, H.15
Yaspo, M.L.16
-
8
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., L. Pachter, and S.L. Salzberg (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25(9): p. 1105-11.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
9
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni, J.C., C.E. Mason, S.M. Mane, M. Stephens, and Y. Gilad (2008) RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res, 18(9): p. 1509-17.
-
(2008)
Genome Res.
, vol.18
, Issue.9
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
10
-
-
16544386180
-
Experimental design and low-level analysis of microarray data
-
Bolstad, B.M., F. Collin, K.M. Simpson, R.A. Irizarry, and T.P. Speed (2004) Experimental design and low-level analysis of microarray data. Int Rev Neurobiol, 60: p. 25-58.
-
(2004)
Int. Rev. Neurobiol.
, vol.60
, pp. 25-58
-
-
Bolstad, B.M.1
Collin, F.2
Simpson, K.M.3
Irizarry, R.A.4
Speed, T.P.5
-
11
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad, B.M., R.A. Irizarry, M. Astrand, and T.P. Speed (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19(2): p. 185-93.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
12
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M.D. and A. Oshlack (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol, 11(3): p. R25.
-
(2010)
Genome Biol.
, vol.11
, Issue.3
-
-
Robinson, M.D.1
Oshlack, A.2
-
13
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
Bullard, J.H., E. Purdom, K.D. Hansen, and S. Dudoit (2010) Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics, 11: p. 94.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
14
-
-
65649126066
-
Transcript length bias in RNA-seq data confounds systems biology
-
Oshlack, A. and M.J. Wakefield (2009) Transcript length bias in RNA-seq data confounds systems biology. Biol Direct, 4: p. 14.
-
(2009)
Biol. Direct
, vol.4
, pp. 14
-
-
Oshlack, A.1
Wakefield, M.J.2
-
15
-
-
77953212372
-
Gene ontology analysis for RNA-seq: Accounting for selection bias
-
Young, M.D., M.J.Wakefield, G.K. Smyth, and A. Oshlack (2010) Gene ontology analysis for RNA-seq: Accounting for selection bias. Genome Biol, 11(2): p. R14.
-
(2010)
Genome Biol.
, vol.11
, Issue.2
-
-
Young, M.D.1
Wakefield, M.J.2
Smyth, G.K.3
Oshlack, A.4
-
16
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., P. Tamayo, V.K. Mootha, S. Mukherjee, B.L. Ebert, M.A. Gillette, A. Paulovich, S.L. Pomeroy, T.R. Golub, E.S. Lander, and J.P. Mesirov (2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102(43): p. 15545-50.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.43
, pp. 15545-50
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
17
-
-
0036789519
-
Variation in gene expression within and among natural populations
-
Oleksiak, M.F., G.A. Churchill, and D.L. Crawford (2002) Variation in gene expression within and among natural populations. Nat Genet, 32(2): p. 261-6.
-
(2002)
Nat. Genet.
, vol.32
, Issue.2
, pp. 261-266
-
-
Oleksiak, M.F.1
Churchill, G.A.2
Crawford, D.L.3
-
18
-
-
0037313182
-
Evolution of gene expression in the Drosophila melanogaster subgroup
-
Rifkin, S.A., J. Kim, and K.P. White (2003) Evolution of gene expression in the Drosophila melanogaster subgroup. Nat Genet, 33(2): p. 138-44.
-
(2003)
Nat. Genet.
, vol.33
, Issue.2
, pp. 138-144
-
-
Rifkin, S.A.1
Kim, J.2
White, K.P.3
-
19
-
-
13244251285
-
Rates of divergence in gene expression profiles of primates, mice, and flies: Stablizing selection and variability among functional categories
-
Lemos, B., C.D. Meiklejohn, M. Caceres, and D.L. Hartl (2005) Rates of divergence in gene expression profiles of primates, mice, and flies: stablizing selection and variability among functional categories. Evolution, 59(1): p. 126-137.
-
(2005)
Evolution
, vol.59
, Issue.1
, pp. 126-137
-
-
Lemos, B.1
Meiklejohn, C.D.2
Caceres, M.3
Hartl, D.L.4
-
20
-
-
0025635488
-
The Rate of morphological evolution in mammals from the standpoint of the neutral expectation
-
Lynch, M. (1990) The Rate of Morphological Evolution in Mammals from the Standpoint of the Neutral Expectation. American Naturalist, 136(6): p. 727-741.
-
(1990)
American Naturalist
, vol.136
, Issue.6
, pp. 727-741
-
-
Lynch, M.1
-
21
-
-
0001199482
-
Phenotypic evolution by neutral mutation
-
Lynch, M. and W.G. Hill (1986) Phenotypic Evolution by Neutral Mutation. Evolution, 40 (5): p. 915-935.
-
(1986)
Evolution
, vol.40
, Issue.5
, pp. 915-935
-
-
Lynch, M.1
Hill, W.G.2
-
22
-
-
27744499137
-
A mutation accumulation assay reveals extensive capacity for rapid gene expression evolution
-
Rifkin, S.A., D. Houle, J. Kim, and K.P. White (2005) A mutation accumulation assay reveals extensive capacity for rapid gene expression evolution. Nature, 438(7065): 220-3.
-
(2005)
Nature
, vol.438
, Issue.7065
, pp. 220-223
-
-
Rifkin, S.A.1
Houle, D.2
Kim, J.3
White, K.P.4
-
23
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley, P.D., U. Trivedi, M. Thomson, F. Oliver, S. Kumar, and M.L. Blaxter (2009) Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res, 19(7): p. 1195-201.
-
(2009)
Genome Res.
, vol.19
, Issue.7
, pp. 1195-1201
-
-
Keightley, P.D.1
Trivedi, U.2
Thomson, M.3
Oliver, F.4
Kumar, S.5
Blaxter, M.L.6
-
24
-
-
18144405733
-
The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
-
Denver, D.R., K. Morris, J.T. Streelman, S.K. Kim, M. Lynch, and W.K. Thomas (2005) The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans. Nat Genet, 37(5): p. 544-8.
-
(2005)
Nat. Genet.
, vol.37
, Issue.5
, pp. 544-548
-
-
Denver, D.R.1
Morris, K.2
Streelman, J.T.3
Kim, S.K.4
Lynch, M.5
Thomas, W.K.6
-
25
-
-
19344372220
-
A neutral model of transcriptome evolution
-
Khaitovich, P., G. Weiss, M. Lachmann, I. Hellmann, W. Enard, B. Muetzel, U. Wirkner, W. Ansorge, and S. Paabo (2004) A neutral model of transcriptome evolution. PLoS Biol, 2 (5): p. E132.
-
(2004)
PLoS Biol.
, vol.2
, Issue.5
-
-
Khaitovich, P.1
Weiss, G.2
Lachmann, M.3
Hellmann, I.4
Enard, W.5
Muetzel, B.6
Wirkner, U.7
Ansorge, W.8
Paabo, S.9
-
26
-
-
0034667792
-
Orchestrated response: A symphony of transcription factors for gene control
-
Lemon, B. and R. Tjian (2000) Orchestrated response: A symphony of transcription factors for gene control. Genes Dev, 14(20): p. 2551-69.
-
(2000)
Genes Dev.
, vol.14
, Issue.20
, pp. 2551-2569
-
-
Lemon, B.1
Tjian, R.2
-
27
-
-
34250785284
-
Genetic properties influencing the evolvability of gene expression
-
Landry, C.R., B. Lemos, S.A. Rifkin, W.J. Dickinson, and D.L. Hartl (2007) Genetic properties influencing the evolvability of gene expression. Science, 317(5834): p. 118-21.
-
(2007)
Science
, vol.317
, Issue.5834
, pp. 118-121
-
-
Landry, C.R.1
Lemos, B.2
Rifkin, S.A.3
Dickinson, W.J.4
Hartl, D.L.5
-
28
-
-
27144539145
-
Natural selection on protein coding genes in the human genome
-
Bustamante, C.D., A. Fledel-Alon, S. Williamson, R. Nielsen, M. Todd Hubisz, S. Glanowski, D.M. Tanenbaum, T.J. White, J.J. Sninsky, R. Hernandez, D. Civello, M.D. Adams, M. Cargill, and A.G. Clark (2005) Natural Selection on Protein Coding Genes in the Human Genome. Nature, 437(7062): 1153-7.
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1153-1157
-
-
Bustamante, C.D.1
Fledel-Alon, A.2
Williamson, S.3
Nielsen, R.4
Todd Hubisz, M.5
Glanowski, S.6
Tanenbaum, D.M.7
White, T.J.8
Sninsky, J.J.9
Hernandez, R.10
Civello, D.11
Adams, M.D.12
Cargill, M.13
Clark, A.G.14
-
29
-
-
34249888736
-
PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans
-
Panowski, S.H., S.Wolff, H. Aguilaniu, J. Durieux, and A. Dillin (2007) PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans. Nature, 447(7144): p. 550-5.
-
(2007)
Nature
, vol.447
, Issue.7144
, pp. 550-555
-
-
Panowski, S.H.1
Wolff, S.2
Aguilaniu, H.3
Durieux, J.4
Dillin, A.5
-
30
-
-
33751430460
-
The search for DAF-16/FOXO transcriptional targets: Approaches and discoveries
-
10.1016/j.exger.2006.06.040
-
Murphy, C.T. (2006) The search for DAF-16/FOXO transcriptional targets: Approaches and discoveries. Experimental Gerontology, doi:10.1016/j.exger.2006. 06.040.
-
(2006)
Experimental Gerontology
-
-
Murphy, C.T.1
-
31
-
-
34547124879
-
Oxidative Stress Enzymes Are Required for DAF-16-Mediated Immunity Due to Generation of Reactive Oxygen Species by Caenorhabditis elegans
-
Chavez, V., A. Mohri-Shiomi, A. Maadani, L. A. Vega, and D.A. Garsin (2007) Oxidative Stress Enzymes Are Required for DAF-16-Mediated Immunity Due to Generation of Reactive Oxygen Species by Caenorhabditis elegans. Genetics, 176(3): p. 1567-77.
-
(2007)
Genetics
, vol.176
, Issue.3
, pp. 1567-1577
-
-
Chavez, V.1
Mohri-Shiomi, A.2
Maadani, A.3
Vega, L.A.4
Garsin, D.A.5
-
32
-
-
22144459722
-
Prediction of cis-regulatory elements using binding site matrices-The successes, the failures and the reasons for both
-
Vavouri, T. and G. Elgar (2005) Prediction of cis-regulatory elements using binding site matrices-the successes, the failures and the reasons for both. Curr Opin Genet Dev, 15(4): p. 395-402.
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, Issue.4
, pp. 395-402
-
-
Vavouri, T.1
Elgar, G.2
-
33
-
-
33747835616
-
Mapping the distribution of chromatin proteins by ChIP on chip
-
Negre, N., S. Lavrov, J. Hennetin, M. Bellis, and G. Cavalli (2006) Mapping the distribution of chromatin proteins by ChIP on chip. Methods Enzymol, 410: p. 316-41.
-
(2006)
Methods Enzymol
, vol.410
, pp. 316-341
-
-
Negre, N.1
Lavrov, S.2
Hennetin, J.3
Bellis, M.4
Cavalli, G.5
-
34
-
-
34548855933
-
ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos
-
Sandmann, T., J.S. Jakobsen, and E.E. Furlong (2006) ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. Nat Protoc, 1 (6): p. 2839-55.
-
(2006)
Nat Protoc
, vol.1
, Issue.6
, pp. 2839-2855
-
-
Sandmann, T.1
Jakobsen, J.S.2
Furlong, E.E.3
-
35
-
-
33646813680
-
Repression of new p53 targets revealed by ChIP on chip experiments
-
Ceribelli, M., M. Alcalay, M.A. Vigano, and R. MantoVani (2006) Repression of new p53 targets revealed by ChIP on chip experiments. Cell Cycle, 5(10): p. 1102-10.
-
(2006)
Cell Cycle
, vol.5
, Issue.10
, pp. 1102-1110
-
-
Ceribelli, M.1
Alcalay, M.2
Vigano, M.A.3
Mantovani, R.4
-
36
-
-
34250363896
-
Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer
-
Lin, Z., S. Reierstad, C.C. Huang, and S.E. Bulun (2007) Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer. Cancer Res, 67(10): p. 5017-24.
-
(2007)
Cancer Res.
, vol.67
, Issue.10
, pp. 5017-5024
-
-
Lin, Z.1
Reierstad, S.2
Huang, C.C.3
Bulun, S.E.4
-
37
-
-
33747069931
-
High-resolution computational models of genome binding events
-
Qi, Y., A. Rolfe, K.D. MacIsaac, G.K. Gerber, D. Pokholok, J. Zeitlinger, T. Danford, R.D. Dowell, E. Fraenkel, T.S. Jaakkola, R.A. Young, and D.K. Gifford (2006) High-resolution computational models of genome binding events. Nat Biotechnol, 24(8): p. 963-70.
-
(2006)
Nat Biotechnol.
, vol.24
, Issue.8
, pp. 963-970
-
-
Qi, Y.1
Rolfe, A.2
MacIsaac, K.D.3
Gerber, G.K.4
Pokholok, D.5
Zeitlinger, J.6
Danford, T.7
Dowell, R.D.8
Fraenkel, E.9
Jaakkola, T.S.10
Young, R.A.11
Gifford, D.K.12
-
38
-
-
77953062527
-
Five-Vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
-
Schmidt, D., M.D. Wilson, B. Ballester, P.C. Schwalie, G.D. Brown, A. Marshall, C. Kutter, S. Watt, C.P. Martinez-Jimenez, S. Mackay, I. Talianidis, P. Flicek, and D.T. Odom (2010) Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science, 328(5981): p. 1036-40.
-
(2010)
Science
, vol.328
, Issue.5981
, pp. 1036-1040
-
-
Schmidt, D.1
Wilson, M.D.2
Ballester, B.3
Schwalie, P.C.4
Brown, G.D.5
Marshall, A.6
Kutter, C.7
Watt, S.8
Martinez-Jimenez, C.P.9
MacKay, S.10
Talianidis, I.11
Flicek, P.12
Odom, D.T.13
-
39
-
-
54249099196
-
Species-specific transcription in mice carrying human chromosome 21
-
Wilson, M.D., N.L. Barbosa-Morais, D. Schmidt, C.M. Conboy, L. Vanes, V.L. Tybulewicz, E.M. Fisher, S. Tavare, and D.T. Odom (2008) Species-specific transcription in mice carrying human chromosome 21. Science, 322 (5900): p. 434-8.
-
(2008)
Science
, vol.322
, Issue.5900
, pp. 434-438
-
-
Wilson, M.D.1
Barbosa-Morais, N.L.2
Schmidt, D.3
Conboy, C.M.4
Vanes, L.5
Tybulewicz, V.L.6
Fisher, E.M.7
Tavare, S.8
Odom, D.T.9
-
40
-
-
34249818182
-
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
-
Odom, D.T., R.D. Dowell, E.S. Jacobsen, W. Gordon, T.W. Danford, K.D. Macisaac, P.A. Rolfe, C.M. Conboy, D.K. Gifford, and E. Fraenkel (2007) Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet, 39(6): p. 730-732.
-
(2007)
Nat. Genet.
, vol.39
, Issue.6
, pp. 730-732
-
-
Odom, D.T.1
Dowell, R.D.2
Jacobsen, E.S.3
Gordon, W.4
Danford, T.W.5
MacIsaac, K.D.6
Rolfe, P.A.7
Conboy, C.M.8
Gifford, D.K.9
Fraenkel, E.10
-
41
-
-
45749107163
-
A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway
-
de Candia, P., R. Blekhman, A.E. Chabot, A. Oshlack, and Y. Gilad (2008) A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway. PLoS ONE, 3(2): p. e1670.
-
(2008)
PLoS ONE
, vol.3
, Issue.2
-
-
De Candia, P.1
Blekhman, R.2
Chabot, A.E.3
Oshlack, A.4
Gilad, Y.5
-
42
-
-
77950566643
-
Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species
-
Bradley, R.K., X.Y. Li, C. Trapnell, S. Davidson, L. Pachter, H.C. Chu, L.A. Tonkin, M.D. Biggin, and M.B. Eisen (2010) Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species. PLoS Biol, 8 (3): p. e1000343.
-
(2010)
PLoS Biol.
, vol.8
, Issue.3
-
-
Bradley, R.K.1
Li., X.Y.2
Trapnell, C.3
Davidson, S.4
Pachter, L.5
Chu, H.C.6
Tonkin, L.A.7
Biggin, M.D.8
Eisen, M.B.9
-
43
-
-
77950578781
-
Variable transcription factor binding: A mechanism of evolutionary change
-
Wittkopp, P.J. (2010) Variable transcription factor binding: A mechanism of evolutionary change. PLoS Biol, 8(3): p. e1000342.
-
(2010)
PLoS Biol.
, vol.8
, Issue.3
-
-
Wittkopp, P.J.1
-
44
-
-
50649108994
-
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
-
Rakyan, V.K., T.A. Down, N.P. Thorne, P. Flicek, E. Kulesha, S. Graf, E.M. Tomazou, L. Backdahl, N. Johnson, M. Herberth, K.L. Howe, D.K. Jackson, M.M. Miretti, H. Fiegler, J.C. Marioni, E. Birney, T.J.P. Hubbard, N.P. Carter, S. Tavaré, and S. Beck (2008) An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). Genome Research, 18(9): p. 1518-29.
-
(2008)
Genome Research
, vol.18
, Issue.9
, pp. 1518-1529
-
-
Rakyan, V.K.1
Down, T.A.2
Thorne, N.P.3
Flicek, P.4
Kulesha, E.5
Graf, S.6
Tomazou, E.M.7
Backdahl, L.8
Johnson, N.9
Herberth, M.10
Howe, K.L.11
Jackson, D.K.12
Miretti, M.M.13
Fiegler, H.14
Marioni, J.C.15
Birney, E.16
Hubbard, T.J.P.17
Carter, N.P.18
Tavaré., S.19
Beck, S.20
more..
-
45
-
-
21544483812
-
Definition, diagnosis, disease types, and classification of asthma
-
Makino, S., M. Adachi, Y. Ago, K. Akiyama, M. Baba, Y. Egashira, M. Fujimura, T. Fukuda, K. Furusho, Y. Iikura, H. Inoue, K. Ito, I. Iwamoto, J. Kabe, Y. Kamikawa, Y. Kawakami, N. Kihara, S. Kitamura, K. Kudo, K. Mano, T. Matsui, H. Mikawa, S. Miyagi, T. Miyamoto, Y. Morita, Y. Nagasaka, T. Nakagawa, S. Nakajima, T. Nakazawa, S. Nishima, K. Ohta, T. Okubo, H. Sakakibara, Y. Sano, K. Shinomiya, K. Takagi, K. Takahashi, G. Tamura, H. Tomioka, K. Yoyoshima, K. Tsukioka, N. Ueda, M. Yamakido, S. Hosoi, and H. Sagara (2005) Definition, diagnosis, disease types, and classification of asthma. Int Arch Allergy Immunol, 136 Suppl 1: p. 3-4.
-
(2005)
Int. Arch. Allergy Immunol.
, vol.136
, Issue.SUPPL. 1
, pp. 3-4
-
-
Makino, S.1
Adachi, M.2
Ago, Y.3
Akiyama, K.4
Baba, M.5
Egashira, Y.6
Fujimura, M.7
Fukuda, T.8
Furusho, K.9
Iikura, Y.10
Inoue, H.11
Ito, K.12
Iwamoto, I.13
Kabe, J.14
Kamikawa, Y.15
Kawakami, Y.16
Kihara, N.17
Kitamura, S.18
Kudo, K.19
Mano, K.20
Matsui, T.21
Mikawa, H.22
Miyagi, S.23
Miyamoto, T.24
Morita, Y.25
Nagasaka, Y.26
Nakagawa, T.27
Nakajima, S.28
Nakazawa, T.29
Nishima, S.30
Ohta, K.31
Okubo, T.32
Sakakibara, H.33
Sano, Y.34
Shinomiya, K.35
Takagi, K.36
Takahashi, K.37
Tamura, G.38
Tomioka, H.39
Yoyoshima, K.40
Tsukioka, K.41
Ueda, N.42
Yamakido, M.43
Hosoi, S.44
Sagara, H.45
more..
-
46
-
-
59149084538
-
The human colon cancer methylome shows similar hypo-And hypermethylation at conserved tissuespecific CpG island shores
-
Irizarry, R.A., C. Ladd-Acosta, B. Wen, Z. Wu, C. Montano, P. Onyango, H. Cui, K. Gabo, M. Rongione, M. Webster, H. Ji, J.B. Potash, S. Sabunciyan, and A.P. Feinberg (2009) The human colon cancer methylome shows similar hypo-and hypermethylation at conserved tissuespecific CpG island shores. Nature Genetics, 41 (2): p. 178-86.
-
(2009)
Nature Genetics
, vol.41
, Issue.2
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
Wu, Z.4
Montano, C.5
Onyango, P.6
Cui, H.7
Gabo, K.8
Rongione, M.9
Webster, M.10
Ji, H.11
Potash, J.B.12
Sabunciyan, S.13
Feinberg, A.P.14
-
47
-
-
0020522019
-
Tissue-specific differences in DNA methylation in various mammals
-
Gama-Sosa, M.A., R.M. Midgett, V.A. Slagel, S. Githens, K.C. Kuo, C.W. Gehrke, and M. Ehrlich (1983) Tissue-specific differences in DNA methylation in various mammals. Biochimica et Biophysica Acta, 740: p. 212-219.
-
(1983)
Biochimica et Biophysica. Acta.
, vol.740
, pp. 212-219
-
-
Gama-Sosa, M.A.1
Midgett, R.M.2
Slagel, V.A.3
Githens, S.4
Kuo, K.C.5
Gehrke, C.W.6
Ehrlich, M.7
-
48
-
-
1542380557
-
Differences in DNA methylation patterns between humans and chimpanzees
-
Enard, W., A. Fassbender, F. Model, P. Adorjan, S. Paabo, and A. Olek (2004) Differences in DNA methylation patterns between humans and chimpanzees. Current Biology, 14(4): p. R148-R149.
-
(2004)
Current Biology
, vol.14
, Issue.4
-
-
Enard, W.1
Fassbender, A.2
Model, F.3
Adorjan, P.4
Paabo, S.5
Olek, A.6
-
49
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein, B.E., M. Kamal, K. Lindblad-Toh, S. Bekiranov, D.K. Bailey, D.J. Huebert, S. McMahon, E.K. Karlsson, E.J. Kulbokas, 3rd, T.R. Gingeras, S.L. Schreiber, and E.S. Lander (2005) Genomic maps and comparative analysis of histone modifications in human and mouse. Cell, 120(2): p. 169-81.
-
(2005)
Cell
, vol.120
, Issue.2
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas, E.J.9
Gingeras, R.T.10
Schreiber, S.L.11
Lander, E.S.12
-
50
-
-
66249089034
-
Differences in DNA methylation patterns and expression of the CCRK gene in human and nonhuman primate cortices
-
Farcas, R., E. Schneider, K. Frauenknecht, I. Kondova, R. Bontrop, J. Bohl, B. Navarro, M. Metzler, H. Zischler, U. Zechner, A. Daser, and T. Haaf (2009) Differences in DNA methylation patterns and expression of the CCRK gene in human and nonhuman primate cortices. Mol Biol Evol, 26(6): p. 1379-89.
-
(2009)
Mol. Biol. Evol.
, vol.26
, Issue.6
, pp. 1379-1389
-
-
Farcas, R.1
Schneider, E.2
Frauenknecht, K.3
Kondova, I.4
Bontrop, R.5
Bohl, J.6
Navarro, B.7
Metzler, M.8
Zischler, H.9
Zechner, U.10
Daser, A.11
Haaf, T.12
-
51
-
-
38549084066
-
Evaluating the role of natural selection in the evolution of gene regulation
-
Fay, J.C. and P.J. Wittkopp (2008) Evaluating the role of natural selection in the evolution of gene regulation. Heredity, 100(2): p. 191-9.
-
(2008)
Heredity
, vol.100
, Issue.2
, pp. 191-199
-
-
Fay, J.C.1
Wittkopp, P.J.2
-
52
-
-
33645754491
-
Neutral and adaptive variation in gene expression
-
Whitehead, A. and D.L. Crawford (2006) Neutral and adaptive variation in gene expression. ProcNatl Acad SciUS A, 103(14): p. 5425-30.
-
(2006)
Proc. Natl. Acad. Sci. US A
, vol.103
, Issue.14
, pp. 5425-5430
-
-
Whitehead, A.1
Crawford, D.L.2
-
53
-
-
33746265259
-
Natural selection on gene expression
-
Gilad, Y., A. Oshlack, and S.A. Rifkin (2006) Natural selection on gene expression. Trends Genet, 22(8): p. 456-61.
-
(2006)
Trends Genet.
, vol.22
, Issue.8
, pp. 456-461
-
-
Gilad, Y.1
Oshlack, A.2
Rifkin, S.A.3
-
54
-
-
84860015746
-
Next generation sequencing technology and fragment assembly algorithms evolutionary Genomics: Statistical and Computational Methods
-
In M. Anisimova (ed) Springer Science+Business Media New York
-
Lee, H., and Tang, H (2012) Next generation sequencing technology and fragment assembly algorithms. In M. Anisimova (ed) Evolutionary Genomics: Statistical and Computational Methods. Methods in Molecular Biology, Springer Science+Business Media New York.
-
(2012)
Methods in Molecular Biology
-
-
Lee, H.1
Tang, H.2
-
55
-
-
84859991597
-
Probability statistics and computational science evolutionary genomics: Statistical and computational methods
-
In M. Anisimova (ed) Springer Science+Business Media New York
-
Beerenwinkel, N., Siebourg, J (2012) Probability, statistics and computational science. In M. Anisimova (ed) Evolutionary Genomics: Statistical and Computational Methods. Methods in Molecular Biology, Springer Science+Business Media New York.
-
(2012)
Methods in Molecular Biology
-
-
Beerenwinkel, N.1
Siebourg, J.2
|