메뉴 건너뛰기




Volumn 2, Issue , 2012, Pages

Identification of links between small molecules and miRNAs in human cancers based on transcriptional responses

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

EID: 84859762550     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep00282     Document Type: Article
Times cited : (66)

References (57)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D. P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 116, 281-297 (2004).
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs-microRNAs with a role in cancer
    • Esquela-Kerscher, A. & Slack, F. J. Oncomirs-microRNAs with a role in cancer. Nat Rev Cancer. 6, 259-269 (2006).
    • (2006) Nat Rev Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 3
    • 33644659734 scopus 로고    scopus 로고
    • Mammalian microRNAs: A small world for fine-tuning gene expression
    • DOI 10.1007/s00335-005-0066-3
    • Sevignani, C., Calin, G. A., Siracusa, L. D. & Croce, C. M. Mammalian microRNAs: a small world for fine-tuning gene expression. Mamm Genome. 17, 189-202 (2006). (Pubitemid 43327650)
    • (2006) Mammalian Genome , vol.17 , Issue.3 , pp. 189-202
    • Sevignani, C.1    Calin, G.A.2    Siracusa, L.D.3    Croce, C.M.4
  • 4
    • 82255185481 scopus 로고    scopus 로고
    • MiREnvironment database: Providing a bridge for microRNAs environmental factors and phenotypes
    • Yang, Q., Qiu, C., Yang, J., Wu, Q. & Cui, Q. miREnvironment database: providing a bridge for microRNAs, environmental factors and phenotypes. Bioinformatics. 27, 3329-3330 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 3329-3330
    • Yang, Q.1    Qiu, C.2    Yang, J.3    Wu, Q.4    Cui, Q.5
  • 5
    • 77952584924 scopus 로고    scopus 로고
    • Targeting microRNAs with small molecules: From dream to reality
    • Zhang, S., Chen, L., Jung, E. J. & Calin, G. A. Targeting microRNAs with small molecules: from dream to reality. Clin Pharmacol Ther. 87, 754-758 (2010).
    • (2010) Clin Pharmacol Ther , vol.87 , pp. 754-758
    • Zhang, S.1    Chen, L.2    Jung, E.J.3    Calin, G.A.4
  • 6
    • 74049101743 scopus 로고    scopus 로고
    • RNA inhibition microRNAs, and new therapeutic agents for cancer treatment
    • Spizzo, R., Rushworth, D., Guerrero, M. & Calin, G. A. RNA inhibition, microRNAs, and new therapeutic agents for cancer treatment. Clin Lymphoma Myeloma. 9 Suppl 3, S313-318 (2009).
    • (2009) Clin Lymphoma Myeloma , vol.9 , Issue.SUPPL. 3
    • Spizzo, R.1    Rushworth, D.2    Guerrero, M.3    Calin, G.A.4
  • 8
    • 74249112787 scopus 로고    scopus 로고
    • Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection
    • Lanford, R. E. et al. Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection. Science. 327, 198-201 (2010).
    • (2010) Science , vol.327 , pp. 198-201
    • Lanford, R.E.1
  • 9
    • 54749089002 scopus 로고    scopus 로고
    • Small-molecule inhibitors of microrna miR-21 function
    • Gumireddy, K. et al. Small-molecule inhibitors of microrna miR-21 function. Angew Chem Int Ed Engl. 47, 7482-7484 (2008).
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 7482-7484
    • Gumireddy, K.1
  • 10
    • 38349190243 scopus 로고    scopus 로고
    • MicroRNAs modulate the chemosensitivity of tumor cells
    • Blower, P. E. et al. MicroRNAs modulate the chemosensitivity of tumor cells. Mol Cancer Ther. 7, 1-9 (2008).
    • (2008) Mol Cancer Ther , vol.7 , pp. 1-9
    • Blower, P.E.1
  • 11
    • 37349050789 scopus 로고    scopus 로고
    • Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer
    • Gusev, Y., Schmittgen, T. D., Lerner, M., Postier, R. & Brackett, D. Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer. BMC Bioinformatics. 8 Suppl 7, S16 (2007).
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 7
    • Gusev, Y.1    Schmittgen, T.D.2    Lerner, M.3    Postier, R.4    Brackett, D.5
  • 12
    • 37749027621 scopus 로고    scopus 로고
    • Pharmacogenomics of microRNA: A miRSNP towards individualized therapy
    • Bertino, J. R., Banerjee, D. & Mishra, P. J. Pharmacogenomics of microRNA: a miRSNP towards individualized therapy. Pharmacogenomics. 8, 1625-1627 (2007).
    • (2007) Pharmacogenomics , vol.8 , pp. 1625-1627
    • Bertino, J.R.1    Banerjee, D.2    Mishra, P.J.3
  • 14
    • 77957044703 scopus 로고    scopus 로고
    • Discovery of drug mode of action and drug repositioning from transcriptional responses
    • Iorio, F. et al. Discovery of drug mode of action and drug repositioning from transcriptional responses. Proc Natl Acad Sci USA. 107, 14621-14626 (2010).
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 14621-14626
    • Iorio, F.1
  • 16
    • 33847246805 scopus 로고    scopus 로고
    • Oncomine 3 0: Genes, pathways, and networks in a collection of 18, 000 cancer gene expression profiles
    • Rhodes, D. R. et al. Oncomine 3. 0: genes, pathways, and networks in a collection of 18, 000 cancer gene expression profiles. Neoplasia. 9, 166-180 (2007).
    • (2007) Neoplasia , vol.9 , pp. 166-180
    • Rhodes, D.R.1
  • 17
    • 2942532642 scopus 로고    scopus 로고
    • Trichostatin A - Like hydroxamate histone deacetylase inhibitors as therapeutic agents: Toxicological point of view
    • Vanhaecke, T., Papeleu, P., Elaut, G. & Rogiers, V. Trichostatin A-like hydroxamate histone deacetylase inhibitors as therapeutic agents: toxicological point of view. Curr Med Chem. 11, 1629-1643 (2004). (Pubitemid 38735799)
    • (2004) Current Medicinal Chemistry , vol.11 , Issue.12 , pp. 1629-1643
    • Vanhaecke, T.1    Papeleu, P.2    Elaut, G.3    Rogiers, V.4
  • 18
    • 43249120953 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors: Mechanisms and clinical significance in cancer: HDAC inhibitor-induced apoptosis
    • Shankar, S. & Srivastava, R. K. Histone deacetylase inhibitors: mechanisms and clinical significance in cancer: HDAC inhibitor-induced apoptosis. Adv Exp Med Biol. 615, 261-298 (2008).
    • (2008) Adv Exp Med Biol , vol.615 , pp. 261-298
    • Shankar, S.1    Srivastava, R.K.2
  • 19
    • 75649096442 scopus 로고    scopus 로고
    • The roles of miR-17-92 cluster in mammal development and tumorigenesis
    • Zhang, Z. W., An, Y. & Teng, C. B. [The roles of miR-17-92 cluster in mammal development and tumorigenesis]. Yi Chuan. 31, 1094-1100 (2009).
    • (2009) Yi Chuan , vol.31 , pp. 1094-1100
    • Zhang, Z.W.1    An, Y.2    Teng, C.B.3
  • 22
    • 77954991297 scopus 로고    scopus 로고
    • Enhancing cytotoxic and apoptotic effect in OVCAR-3 and MDAH-2774 cells with all-trans retinoic acid and zoledronic acid: A paradigm of synergistic molecular targeting treatment for ovarian cancer
    • Karabulut, B. et al. Enhancing cytotoxic and apoptotic effect in OVCAR-3 and MDAH-2774 cells with all-trans retinoic acid and zoledronic acid: a paradigm of synergistic molecular targeting treatment for ovarian cancer. J Exp Clin Cancer Res. 29, 102 (2010).
    • (2010) J Exp Clin Cancer Res , vol.29 , Issue.102
    • Karabulut, B.1
  • 23
    • 70449995469 scopus 로고    scopus 로고
    • Identifying genotype-dependent efficacy of single and combined PI3K-and MAPK-pathway inhibition in cancer
    • Sos, M. L. et al. Identifying genotype-dependent efficacy of single and combined PI3K-and MAPK-pathway inhibition in cancer. Proc Natl Acad Sci USA. 106, 18351-18356 (2009).
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 18351-18356
    • Sos, M.L.1
  • 24
    • 34547907805 scopus 로고    scopus 로고
    • Expanding mTOR signaling
    • DOI 10.1038/cr.2007.64, PII CR200764
    • Yang, Q. & Guan, K. L. Expanding mTOR signaling. Cell Res. 17, 666-681 (2007). (Pubitemid 47255937)
    • (2007) Cell Research , vol.17 , Issue.8 , pp. 666-681
    • Yang, Q.1    Guan, K.-L.2
  • 25
    • 84855960713 scopus 로고    scopus 로고
    • MiR-129-5p is required for histone deacetylase inhibitor-induced cell death in thyroid cancer cells
    • Brest, P. et al. MiR-129-5p is required for histone deacetylase inhibitor-induced cell death in thyroid cancer cells. Endocr Relat Cancer. 18, 711-719 (2011).
    • (2011) Endocr Relat Cancer , vol.18 , pp. 711-719
    • Brest, P.1
  • 26
    • 78651353583 scopus 로고    scopus 로고
    • Methyl-CpG binding protein MBD2 is implicated in methylationmediated suppression of miR-373 in hilar cholangiocarcinoma
    • Chen, Y. et al. Methyl-CpG binding protein MBD2 is implicated in methylationmediated suppression of miR-373 in hilar cholangiocarcinoma. Oncol Rep. 25, 443-451 (2011).
    • (2011) Oncol Rep , vol.25 , pp. 443-451
    • Chen, Y.1
  • 27
    • 61449558376 scopus 로고    scopus 로고
    • Effect of trichostatin a on viability and microRNA expression in human pancreatic cancer cell line BxPC-3
    • Zhang, S., Cai, X., Huang, F., Zhong, W. & Yu, Z. Effect of trichostatin a on viability and microRNA expression in human pancreatic cancer cell line BxPC-3. Exp Oncol. 30, 265-268 (2008).
    • (2008) Exp Oncol , vol.30 , pp. 265-268
    • Zhang, S.1    Cai, X.2    Huang, F.3    Zhong, W.4    Yu, Z.5
  • 28
    • 79959834606 scopus 로고    scopus 로고
    • Integrative analysis of many weighted co-expression networks using tensor computation
    • Li, W. et al. Integrative analysis of many weighted co-expression networks using tensor computation. PLoS Comput Biol. 7, e1001106 (2011).
    • (2011) PLoS Comput Biol , vol.7
    • Li, W.1
  • 29
    • 79952199699 scopus 로고    scopus 로고
    • Identification of microRNA-mRNA modules using microarray data
    • Jayaswal, V., Lutherborrow, M., Ma, D. D. & Yang, Y. H. Identification of microRNA-mRNA modules using microarray data. BMC Genomics. 12, 138 (2011).
    • (2011) BMC Genomics , vol.12 , pp. 138
    • Jayaswal, V.1    Lutherborrow, M.2    Ma, D.D.3    Yang, Y.H.4
  • 30
    • 79961125191 scopus 로고    scopus 로고
    • Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma
    • Zheng, S., Tansey, W. P., Hiebert, S. W. & Zhao, Z. Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma. BMC Med Genomics. 4, 62 (2011).
    • (2011) BMC Med Genomics , vol.4 , pp. 62
    • Zheng, S.1    Tansey, W.P.2    Hiebert, S.W.3    Zhao, Z.4
  • 33
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • DOI 10.1126/science.1158140
    • Campillos, M., Kuhn, M., Gavin, A. C., Jensen, L. J. & Bork, P. Drug target identification using side-effect similarity. Science. 321, 263-266 (2008). (Pubitemid 351989100)
    • (2008) Science , vol.321 , Issue.5886 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.-C.3    Jensen, L.J.4    Bork, P.5
  • 35
    • 0037068532 scopus 로고    scopus 로고
    • Do structurally similar molecules have similar biological activity?
    • DOI 10.1021/jm020155c
    • Martin, Y. C., Kofron, J. L. & Traphagen, L. M. Do structurally similar molecules have similar biological activity? J Med Chem. 45, 4350-4358 (2002). (Pubitemid 35025581)
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.19 , pp. 4350-4358
    • Martin, Y.C.1    Kofron, J.L.2    Traphagen, L.M.3
  • 36
    • 0034976119 scopus 로고    scopus 로고
    • Islet cell tumors of the pancreas: The medical oncologist's perspective
    • DOI 10.1016/S0039-6109(05)70141-9
    • Brentjens, R. & Saltz, L. Islet cell tumors of the pancreas: the medical oncologist's perspective. Surg Clin North Am. 81, 527-542 (2001). (Pubitemid 32612114)
    • (2001) Surgical Clinics of North America , vol.81 , Issue.3 , pp. 527-542
    • Brentjens, R.1    Saltz, L.2
  • 37
    • 78751556979 scopus 로고    scopus 로고
    • Autophagy as a therapeutic target in cancer
    • Chen, N. & Karantza, V. Autophagy as a therapeutic target in cancer. Cancer Biol Ther. 11, 157-168 (2011).
    • (2011) Cancer Biol Ther , vol.11 , pp. 157-168
    • Chen, N.1    Karantza, V.2
  • 38
    • 0037163688 scopus 로고    scopus 로고
    • Evaluation of 2-deoxy-D-glucose as a chemotherapeutic agent: Mechanism of cell death
    • DOI 10.1038/sj.bjc.6600547
    • Aft, R. L., Zhang, F. W. & Gius, D. Evaluation of 2-deoxy-D-glucose as a chemotherapeutic agent:mechanism of cell death. Br J Cancer. 87, 805-812 (2002). (Pubitemid 35178760)
    • (2002) British Journal of Cancer , vol.87 , Issue.7 , pp. 805-812
    • Aft, R.L.1    Zhang, F.W.2    Gius, D.3
  • 39
    • 77951246917 scopus 로고    scopus 로고
    • Chemosensitizing and cytotoxic effects of 2-deoxy-Dglucose on breast cancer cells
    • Zhang, F. & Aft, R. L. Chemosensitizing and cytotoxic effects of 2-deoxy-Dglucose on breast cancer cells. J Cancer Res Ther. 5 Suppl 1, S41-43 (2009).
    • (2009) J Cancer Res Ther , vol.5 , Issue.SUPPL. 1
    • Zhang, F.1    Aft, R.L.2
  • 40
    • 0037180757 scopus 로고    scopus 로고
    • Inflammation and cancer
    • DOI 10.1038/nature01322
    • Coussens, L. M. & Werb, Z. Inflammation and cancer. Nature. 420, 860-867 (2002). (Pubitemid 36019639)
    • (2002) Nature , vol.420 , Issue.6917 , pp. 860-867
    • Coussens, L.M.1    Werb, Z.2
  • 41
    • 71149114452 scopus 로고    scopus 로고
    • Estrogen treatment following severe burn injury reduces brain inflammation and apoptotic signaling
    • Gatson, J. W. et al. Estrogen treatment following severe burn injury reduces brain inflammation and apoptotic signaling. J Neuroinflammation. 6, 30 (2009).
    • (2009) J Neuroinflammation , vol.6 , pp. 30
    • Gatson, J.W.1
  • 42
    • 79952199699 scopus 로고    scopus 로고
    • Identification of microRNA-mRNA Modules using Microarray Data
    • Jayaswal, V., Lutherborrow, M., Ma, D. D. & Yang, Y. H. Identification of microRNA-mRNA Modules using Microarray Data. BMC Genomics. 12, 138 (2011).
    • (2011) BMC Genomics , vol.12 , pp. 138
    • Jayaswal, V.1    Lutherborrow, M.2    Ma, D.D.3    Yang, Y.H.4
  • 43
    • 84859769301 scopus 로고    scopus 로고
    • Dissection of humanMiRNA regulatory influence to subpathway
    • Li, X. et al. Dissection of humanMiRNA regulatory influence to subpathway. Brief Bioinform. (2011).
    • (2011) Brief Bioinform
    • Li, X.1
  • 44
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • DOI 10.1261/rna.5248604
    • Rehmsmeier, M., Steffen, P., Hochsmann, M. & Giegerich, R. Fast and effective prediction of microRNA/target duplexes. RNA. 10, 1507-1517 (2004). (Pubitemid 39288185)
    • (2004) RNA , vol.10 , Issue.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 46
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
    • DOI 10.1016/j.cell.2006.07.031, PII S0092867406010993
    • Miranda, K. C. et al. A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell. 126, 1203-1217 (2006). (Pubitemid 44380294)
    • (2006) Cell , vol.126 , Issue.6 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.-S.4    Tam, W.-L.5    Thomson, A.M.6    Lim, B.7    Rigoutsos, I.8
  • 48
    • 0842321501 scopus 로고    scopus 로고
    • MicroRNA targets in Drosophila
    • Enright, A. J. et al. MicroRNA targets in Drosophila. Genome Biol. 5, R1 (2003).
    • (2003) Genome Biol , vol.5
    • Enright, A.J.1
  • 50
    • 0346094457 scopus 로고    scopus 로고
    • Prediction of mammalian microRNA targets
    • DOI 10.1016/S0092-8674(03)01018-3
    • Lewis, B. P., Shih, I. H., Jones-Rhoades, M. W., Bartel, D. P. & Burge, C. B. Prediction of mammalian microRNA targets. Cell. 115, 787-798 (2003). (Pubitemid 38058492)
    • (2003) Cell , vol.115 , Issue.7 , pp. 787-798
    • Lewis, B.P.1    Shih, I.-H.2    Jones-Rhoades, M.W.3    Bartel, D.P.4    Burge, C.B.5
  • 51
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 4, 44-57 (2009).
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 52
    • 34547799698 scopus 로고    scopus 로고
    • Easy GO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
    • Zhou, X. & Su, Z. EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species. BMC Genomics. 8, 246 (2007).
    • (2007) BMC Genomics , vol.8 , pp. 246
    • Zhou, X.1    Su, Z.2
  • 53
    • 71049148804 scopus 로고    scopus 로고
    • Subpathway Miner: A software package for flexible identification of pathways
    • Li, C. et al. SubpathwayMiner: a software package for flexible identification of pathways. Nucleic Acids Res. 37, e131 (2009).
    • (2009) Nucleic Acids Res , vol.37
    • Li, C.1
  • 55
    • 56649116111 scopus 로고    scopus 로고
    • Gene expression module-based chemical function similarity search
    • Li, Y. et al. Gene expression module-based chemical function similarity search. Nucleic Acids Res. 36, e137 (2008).
    • (2008) Nucleic Acids Res , vol.36
    • Li, Y.1
  • 56
    • 67849104638 scopus 로고    scopus 로고
    • PubChem: A public information system for analyzing bioactivities of small molecules
    • Wang, Y. et al. PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 37, W623-633 (2009).
    • (2009) Nucleic Acids Res , vol.37
    • Wang, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.