In vivo fluorescence imaging and spectroscopy

Handbook of Physics in Medicine and Biology

Volumn , Issue , 2010, Pages 30-1-30-11

  Palmer, Gregory M ^a   Vishwanath, Karthik ^b  

^a DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b Duke University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENERGY TRANSFER; FORSTER RESONANCE ENERGY TRANSFER; MOLECULES; SPECTROSCOPY;

BIOLOGICAL MOLECULE; BIOLOGICAL PHENOMENA; BIOMEDICAL RESEARCH; HIGH RESOLUTION; IN-VIVO IMAGING; INTERWORKING; PUMP-PROBE SPECTROSCOPY; SINGLE-MOLECULE DETECTION;

FLUORESCENCE IMAGING;

EID: 84859751430     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/9781420075250     Document Type: Chapter

References (57)

1. Prasad, P.N., Introduction to Biophotonics, Vol. xvii, 593pp., [8] p. of plates. Hoboken, NJ: Wiley-Interscience, 2003.
2. Hof, M., Hutterer, R., and Fidler, V., Fluorescence Spectroscopy in Biology: Advanced Methods and Their Applications to Membranes, Proteins, DNA, and Cells, Springer series on fluorescence 3, Vol. xix, 305pp. Berlin, NY: Springer, 2005.
3. Zewail, A.H., Laser femtochemistry. Science, 242(4886): 1645-1653, 1988.
4. Carlson, R.W., et al., HER2 testing in breast cancer: NCCN task force report and recommendations. J. Natl. Compr. Canc. Netw., 4(Suppl 3): S1-S22; quiz S23-S24, 2006.
5. Griffiths, D.J., Introduction to Electrodynamics, 3rd edition. Upper Saddle River, NJ: Prentice-Hall, 1999.
6. Hecht, E., Optics, 4th edition, p. 698. San Francisco, CA: Addison-Wesley, 2002.
7. Griffiths, D.J., Introduction to Quantum Mechanics, 2nd edition. Upper Saddle River, NJ: Prentice-Hall, 2004.
8. Bohren, C.F. and Huffman, D.R., Absorption and Scattering of Light by Small Particles, Vol. xiv, 530pp. New York: Wiley, 1983.
9. Jobsis-vanderVliet, F.F., Discovery of the near-infrared window into the body and the early development of nearinfrared spectroscopy. J. Biomed. Opt., 4(4): 392-396, 1999.
10. Redmond, R.W., Introduction to fluorescence and photophysics, in Handbook of Biomedical Fluorescence, M.-A. Mycek and B.W. Pogue, (Eds). New York: Marcel Dekker, 2003.
11. Shankar, R., Principles of Quantum Mechanics, New York: Plenum Press, 1994.
12. Prahl, S.A., Alphabetical Index of Photochem CAD Spectra, 2007 [cited; Available from: http://omlc.ogi.edu/spectra/PhotochemCAD/html/alpha.html].
13. Lakowicz, J.R., Principles of Fluorescence Spectroscopy, 2nd edition, p. 698. New York: Kluwer Academic/Plenum, 1999.
14. Freed, K.F., Irreversible electronic relaxation in polyatomic molecules. J. Chem. Phys., 52(3): 1345-1354, 1970.
15. Freed, K.F. and Tric, C., Collision dynamics of collision induced intersystem crossing processes. Chem. Phys., 33: 249-266, 1978.
16. Reed, M.A., Quantum dots. Sci. Am., 268(1): 118-123, 1992.
17. Zrenner, A., A close look on single quantum dots. J. Chem. Phys., 112(18): 7790-7798, 2000.
18. Rumsey, W., Vanderkooi, J., and Wilson, D., Imaging of phosphorescence: A novel method for measuring oxygen distribution in perfused tissue. Science, 241(4873): 1649-1651, 1988.
19. Stryer, L., Fluorescence energy transfer as a spectroscopic ruler. Ann. Rev. Biochem., 47: 819-846, 1978.
20. Clegg, R.M., Fluorescence resonance energy transfer. Curr. Opin. Biotechnol., 6(1): 103-110, 1995.
21. Jares-Erijman, E.A. and Jovin, T.M., FRET imaging. Nat. Biotechnol., 21(11): 1387-1395, 2003.
22. Rizo, J., Illuminating membrane fusion. Proc. Natl. Acad. Sci. USA, 103(52): 19611-19612, 2006.
23. Deniz, A.A., et al., Single-molecule protein folding: Diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2. Proc. Natl. Acad. Sci. USA, 97(10): 5179-5184, 2000.
24. Lipman, E.A., et al., Single-molecule measurement of protein folding kinetics. Science, 301(5637): 1233-1235, 2003.
25. Weiss, S., Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy. Nat. Struct. Biol., 7(9): 724-729, 2000.
26. Axelrod, D., et al., Mobility measurement by analysis of fluorescence photobleaching recovery kinetics. Biophys. J., 16(9): 1055-1069, 1976.
27. Soumpasis, D.M., Theoretical analysis of fluorescence photobleaching recovery experiments. Biophys. J., 41(1): 95-97, 1983.
28. Weissleder, R., Molecular imaging: Exploring the next frontier. Radiology 212(3): 609-614, 1999.
29. Massoud, T.F. and Gambhir, S.S., Molecular imaging in living subjects: Seeing fundamental biological processes in a new light. Genes Dev., 17(5): 545-580, 2003.
30. Weissleder, R. and Pittet, M.J., Imaging in the era of molecular oncology. Nature, 452(7187): 580-589, 2008.
31. Lakowicz, J.R., Principles of Fluorescence Spectroscopy, 3rd edition, Vol. xxvi, 954pp. New York: Springer, 2006.
32. Thompson, R.B., Fluorescence Sensors and Biosensors, 395pp. Boca Raton: CRC/Taylor & Francis, 2006.
33. Pierce, M.C., Javier, D.J., and Richards-Kortum, R., Optical contrast agents and imaging systems for detection and diagnosis of cancer. Int. J. Cancer, 123(9): 1979-1990, 2008.
34. Massoud, T.F. and Gambhir, S.S., Integrating noninvasive molecular imaging into molecular medicine: An evolving paradigm. Trends Mol. Med., 13(5): 183-91, 2007.
35. Ntziachristos, V., Bremer, C., and Weissleder, R., Fluorescence imaging with near-infrared light: New technological advances that enable in vivo molecular imaging. Eur. Radiol., 13(1): 195-208, 2003.
36. Rajendran, M. and Ellington, A.D., In vitro selection of molecular beacons. Nucleic Acids Res., 31(19): 5700-5713, 2003.
37. Lin, Y., Weissleder, R., and Tung, C.H., Novel near-infrared cyanine fluorochromes: Synthesis, properties, and bioconjugation. Bioconjug. Chem., 13(3): 605-610, 2002.
38. Hsu, E.R., et al., Real-time detection of epidermal growth factor receptor expression in fresh oral cavity biopsies using a molecular-specific contrast agent. Int. J. Cancer, 118(12): 3062-3071, 2006.
39. Becker, A., et al., Receptor-targeted optical imaging of tumors with near-infrared fluorescent ligands. Nat. Biotechnol., 19(4): 327-331, 2001.
40. Gao, X., et al., In vivo cancer targeting and imaging with semiconductor quantum dots. Nat. Biotechnol., 22(8): 969-976, 2004.
41. Tsien, R.Y., The green fluorescent protein. Annu. Rev. Biochem., 67: 509-544, 1998.
42. Martin, M.M. and Lindqvist L., The pH dependence of fluorescein fluorescence. J. Lumines., 10(6): 381-390, 1975.
43. Kneen, M., et al., Green fluorescent protein as a noninvasive intracellular pH indicator. Biophys. J., 74(3): 1591-1599, 1998.
44. Whitaker, J.E., Haugland, R.P., and Prendergast, F.G., Spectral and photophysical studies of benzo[c]xanthene dyes: Dual emission pH sensors. Anal. Biochem., 194(2): 330-344, 1991.
45. 2+ based on green fluorescent proteins and calmodulin. Nature, 388(6645): 882-887, 1997.
46. Truong, K., et al., Calcium indicators based on calmodulinfluorescent protein fusions. Methods Mol. Biol., 352: 71-82, 2007.
47. Bradley, R.S. and Thorniley, M.S., A review of attenuation correction techniques for tissue fluorescence. J. R. Soc. Interface, 3(6): 1-13, 2006.
48. Ramanujam, N., Fluorescence spectroscopy in vivo, in Encyclopedia of Analytical Chemistry, R. Meyers (Ed.), pp. 20-56. New York: Wiley, 2000.
49. Huang, Q., et al., Noninvasive visualization of tumors in rodent dorsal skin window chambers. Nat. Biotechnol., 17(10): 1033-1035, 1999.
50. Denk, W., Strickler, J.H., and Webb, W.W., Two-photon laser scanning fluorescence microscopy. Science, 248(4951): 73-76, 1990.
51. Helmchen, F. and Denk, W., Deep tissue two-photon microscopy. Nat. Meth., 2(12): 932-940, 2005.
52. Svoboda, K. and Block, S.M., Biological applications of optical forces. Annu. Rev. Biophys. Biomol. Struct., 23(1): 247-285, 1994.
53. Oheim, M., et al., Two-photon microscopy in brain tissue: Parameters influencing the imaging depth. J. Neurosci. Methods, 111(1): 29-37, 2001.
54. Frangioni, J.V., In vivo near-infrared fluorescence imaging. Curr. Opin. Chem. Biol., 7(5): 626-634, 2003.
55. Ntziachristos, V., et al., Looking and listening to light: The evolution of whole-body photonic imaging. Nat. Biotechnol., 23: 313-320, 2005.
56. Prahl, S., Optical Absorption of Hemoglobin, 2008 [cited 2008; Available from: http://omlc.ogi.edu/spectra/hemoglobin].
57. Segelstein, D., The Complex Refractive Index of Water. University of Missouri, Kansas City, 1981.