메뉴 건너뛰기




Volumn 7, Issue 4, 2012, Pages

Discovery of potential pirnas from next generation sequences of the sexually mature porcine testes

Author keywords

[No Author keywords available]

Indexed keywords

PIWI INTERACTING RNA; SMALL INTERFERING RNA; TRANSCRIPTOME;

EID: 84859509738     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0034770     Document Type: Article
Times cited : (21)

References (45)
  • 2
    • 34748824329 scopus 로고    scopus 로고
    • Cloning and expression profiling of testis-expressed piRNA-like RNAs
    • Ro S, Park C, Song R, Nguyen D, Jin J, et al. (2007) Cloning and expression profiling of testis-expressed piRNA-like RNAs. RNA 13: 1693-1702.
    • (2007) RNA , vol.13 , pp. 1693-1702
    • Ro, S.1    Park, C.2    Song, R.3    Nguyen, D.4    Jin, J.5
  • 3
    • 0034889978 scopus 로고    scopus 로고
    • A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells
    • Kleene KC, (2001) A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells. Mech Dev 106: 3-23.
    • (2001) Mech Dev , vol.106 , pp. 3-23
    • Kleene, K.C.1
  • 4
    • 77957872390 scopus 로고    scopus 로고
    • Microarray-based approach identifies differentially expressed microRNAs in porcine sexually immature and mature testes
    • Luo L, Ye L, Liu G, Shao G, Zheng R, et al. (2010) Microarray-based approach identifies differentially expressed microRNAs in porcine sexually immature and mature testes. PLoS One 5: e11744.
    • (2010) PLoS One , vol.5
    • Luo, L.1    Ye, L.2    Liu, G.3    Shao, G.4    Zheng, R.5
  • 5
    • 77749292220 scopus 로고    scopus 로고
    • microRNAs in the testis: building up male fertility
    • Papaioannou MD, Nef S, (2010) microRNAs in the testis: building up male fertility. J Androl 31: 26.
    • (2010) J Androl , vol.31 , pp. 26
    • Papaioannou, M.D.1    Nef, S.2
  • 6
  • 7
    • 33745621037 scopus 로고    scopus 로고
    • A novel class of small RNAs in mouse spermatogenic cells
    • Grivna ST, Beyret E, Wang Z, Lin H, (2006) A novel class of small RNAs in mouse spermatogenic cells. Genes Dev 13: 1709-1714.
    • (2006) Genes Dev , vol.13 , pp. 1709-1714
    • Grivna, S.T.1    Beyret, E.2    Wang, Z.3    Lin, H.4
  • 8
    • 33748602389 scopus 로고    scopus 로고
    • MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesis
    • Grivna ST, Pyhtila B, Lin H, (2006) MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesis. Proc Natl Acad Sci U S A 103: 13415-13420.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 13415-13420
    • Grivna, S.T.1    Pyhtila, B.2    Lin, H.3
  • 10
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M, Zamore PD, (2009) Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 11
    • 34248160438 scopus 로고    scopus 로고
    • Developmentally regulated piRNA clusters implicate MILI in transposon control
    • Aravin AA, Sachidanandam R, Girard A, Toth KF, Hannon GJ, (2007) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744-747.
    • (2007) Science , vol.316 , pp. 744-747
    • Aravin, A.A.1    Sachidanandam, R.2    Girard, A.3    Toth, K.F.4    Hannon, G.J.5
  • 12
    • 77957775830 scopus 로고    scopus 로고
    • Somatic piRNA biogenesis
    • Zamore PD, (2010) Somatic piRNA biogenesis. EMBO J 29: 3219-3221.
    • (2010) EMBO J , vol.29 , pp. 3219-3221
    • Zamore, P.D.1
  • 13
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, et al. (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5
  • 14
    • 79959293264 scopus 로고    scopus 로고
    • Zygotic amplification of secondary piRNAs during silkworm embryogenesis
    • Kawaoka S, Arai Y, Kadota K, Suzuki Y, Hara K, et al. (2011) Zygotic amplification of secondary piRNAs during silkworm embryogenesis. RNA 17: 1401-1407.
    • (2011) RNA , vol.17 , pp. 1401-1407
    • Kawaoka, S.1    Arai, Y.2    Kadota, K.3    Suzuki, Y.4    Hara, K.5
  • 15
    • 69249225196 scopus 로고    scopus 로고
    • The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters
    • Klattenhoff C, Xi H, Li C, Lee S, Xu J, et al. (2009) The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters. Cell 138: 1137-1149.
    • (2009) Cell , vol.138 , pp. 1137-1149
    • Klattenhoff, C.1    Xi, H.2    Li, C.3    Lee, S.4    Xu, J.5
  • 17
    • 70349687126 scopus 로고    scopus 로고
    • GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germline
    • Ma L, Buchold GM, Greenbaum MP, Roy A, Burns KH, et al. (2009) GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germline. PLoS Genet 5: e1000635.
    • (2009) PLoS Genet , vol.5
    • Ma, L.1    Buchold, G.M.2    Greenbaum, M.P.3    Roy, A.4    Burns, K.H.5
  • 18
    • 33747369856 scopus 로고    scopus 로고
    • Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
    • Saito K, Nishida KM, Mori T, Kawamura Y, Miyoshi K, et al. (2006) Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev 20: 2214-2222.
    • (2006) Genes Dev , vol.20 , pp. 2214-2222
    • Saito, K.1    Nishida, K.M.2    Mori, T.3    Kawamura, Y.4    Miyoshi, K.5
  • 19
    • 78049387387 scopus 로고    scopus 로고
    • Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
    • Rouget C, Papin C, Boureux A, Meunier AC, Franco B, et al. (2010) Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 467: 1128-1132.
    • (2010) Nature , vol.467 , pp. 1128-1132
    • Rouget, C.1    Papin, C.2    Boureux, A.3    Meunier, A.C.4    Franco, B.5
  • 20
    • 79953089167 scopus 로고    scopus 로고
    • PIWI-interacting small RNAs: the vanguard of genome defence
    • Siomi MC, Sato K, Pezic D, Aravin AA, (2011) PIWI-interacting small RNAs: the vanguard of genome defence. Nat Rev Mol Cell Biol 12: 246-258.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 246-258
    • Siomi, M.C.1    Sato, K.2    Pezic, D.3    Aravin, A.A.4
  • 21
    • 39149098441 scopus 로고    scopus 로고
    • H1 histone subtype constitution and phosphorylation state of the ageing cell system of human peripheral blood lymphocytes
    • Happel N, Doenecke D, Sekeri-Pataryas KE, Sourlingas TG, (2008) H1 histone subtype constitution and phosphorylation state of the ageing cell system of human peripheral blood lymphocytes. Exp Gerontol 43: 184-199.
    • (2008) Exp Gerontol , vol.43 , pp. 184-199
    • Happel, N.1    Doenecke, D.2    Sekeri-Pataryas, K.E.3    Sourlingas, T.G.4
  • 22
    • 38549141630 scopus 로고    scopus 로고
    • piRNABank: a web resource on classified and clustered Piwi-interacting RNAs
    • Sai Lakshmi S, Agrawal S, (2008) piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. Nucleic Acids Res 36: D173-177.
    • (2008) Nucleic Acids Res , vol.36
    • Sai Lakshmi, S.1    Agrawal, S.2
  • 24
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian piwi proteins
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA, (2006) A germline-specific class of small RNAs binds mammalian piwi proteins. Nature 442: 199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 25
    • 74049164557 scopus 로고    scopus 로고
    • Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    • Chen X, Li Q, Wang J, Guo X, Jiang X, et al. (2009) Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 10: R78.
    • (2009) Genome Biol , vol.10
    • Chen, X.1    Li, Q.2    Wang, J.3    Guo, X.4    Jiang, X.5
  • 26
    • 79551564464 scopus 로고    scopus 로고
    • Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach
    • Xie SS, Li XY, Liu T, Cao JH, Zhong Q, et al. (2011) Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach. PLoS One 6: e16235.
    • (2011) PLoS One , vol.6
    • Xie, S.S.1    Li, X.Y.2    Liu, T.3    Cao, J.H.4    Zhong, Q.5
  • 27
    • 79952589852 scopus 로고    scopus 로고
    • A k-mer scheme to predict piRNAs and characterize locust piRNAs
    • Zhang Y, Wang X, Kang L, (2011) A k-mer scheme to predict piRNAs and characterize locust piRNAs. Bioinformatics 27: 771-776.
    • (2011) Bioinformatics , vol.27 , pp. 771-776
    • Zhang, Y.1    Wang, X.2    Kang, L.3
  • 28
    • 0030707709 scopus 로고    scopus 로고
    • Testis-specific expression of the mouse histone gene Hit is regulated by several promoter elements
    • Drabent B, Doenecke D, (1997) Testis-specific expression of the mouse histone gene Hit is regulated by several promoter elements. Biol Reprod 57: 1375-1383.
    • (1997) Biol Reprod , vol.57 , pp. 1375-1383
    • Drabent, B.1    Doenecke, D.2
  • 29
    • 0021434213 scopus 로고
    • The alterations in H1 histone complement during mouse spermatogenesis and their significance for H1 subtype function
    • Lennox RW, Cohen LH, (1984) The alterations in H1 histone complement during mouse spermatogenesis and their significance for H1 subtype function. Dev Biol 103: 80-84.
    • (1984) Dev Biol , vol.103 , pp. 80-84
    • Lennox, R.W.1    Cohen, L.H.2
  • 30
    • 38049086763 scopus 로고    scopus 로고
    • Noncoding RNAs of the mammalian testis: the meiotic transcripts Nct1 and Nct2 encode piRNAs. Ann N Y Acad Sci
    • Iguchi N, Xu M, Hori T, Hecht NB, (2007) Noncoding RNAs of the mammalian testis: the meiotic transcripts Nct1 and Nct2 encode piRNAs. Ann N Y Acad Sci. 1120: 84-94.
    • (2007) , vol.1120 , pp. 84-94
    • Iguchi, N.1    Xu, M.2    Hori, T.3    Hecht, N.B.4
  • 31
    • 81955161868 scopus 로고    scopus 로고
    • piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells
    • Cheng J, Deng H, Xiao B, Zhou H, Zhou F, et al. (2012) piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett 315: 12-17.
    • (2012) Cancer Lett , vol.315 , pp. 12-17
    • Cheng, J.1    Deng, H.2    Xiao, B.3    Zhou, H.4    Zhou, F.5
  • 32
    • 79960747675 scopus 로고    scopus 로고
    • piR_015520 belongs to Piwi-associated RNAs regulates expression of the human melatonin receptor 1A gene
    • Esposito T, Magliocca S, Formicola D, Gianfrancesco F, (2011) piR_015520 belongs to Piwi-associated RNAs regulates expression of the human melatonin receptor 1A gene. PLoS One 6: e22727.
    • (2011) PLoS One , vol.6
    • Esposito, T.1    Magliocca, S.2    Formicola, D.3    Gianfrancesco, F.4
  • 33
    • 79952526671 scopus 로고    scopus 로고
    • piRNAs meet mitochondria
    • Aravin AA, Chan DC, (2011) piRNAs meet mitochondria. Dev Cell 20: 287-288.
    • (2011) Dev Cell , vol.20 , pp. 287-288
    • Aravin, A.A.1    Chan, D.C.2
  • 34
    • 79952525007 scopus 로고    scopus 로고
    • MITOPLD is a mitochondrial protein essential for nuage formation and piRNA biogenesis in the mouse germline
    • Watanabe T, Chuma S, Yamamoto Y, Kuramochi-Miyagawa S, Totoki Y, et al. (2011) MITOPLD is a mitochondrial protein essential for nuage formation and piRNA biogenesis in the mouse germline. Dev Cell 20: 364-375.
    • (2011) Dev Cell , vol.20 , pp. 364-375
    • Watanabe, T.1    Chuma, S.2    Yamamoto, Y.3    Kuramochi-Miyagawa, S.4    Totoki, Y.5
  • 35
    • 79952509006 scopus 로고    scopus 로고
    • piRNA-associated germline nuage formation and spermatogenesis require MitoPLD profusogenic mitochondrial -surface lipid signaling
    • Huang H, Gao Q, Peng X, Choi SY, Sarma K, et al. (2011) piRNA-associated germline nuage formation and spermatogenesis require MitoPLD profusogenic mitochondrial-surface lipid signaling. Dev Cell 20: 376-387.
    • (2011) Dev Cell , vol.20 , pp. 376-387
    • Huang, H.1    Gao, Q.2    Peng, X.3    Choi, S.Y.4    Sarma, K.5
  • 36
    • 0002856661 scopus 로고
    • Testicular development in Chinese Meishan boars
    • Harayama H, Nanjo I, Kanda S, Kato S, (1991) Testicular development in Chinese Meishan boars. Theriogenology 36: 637-643.
    • (1991) Theriogenology , vol.36 , pp. 637-643
    • Harayama, H.1    Nanjo, I.2    Kanda, S.3    Kato, S.4
  • 38
    • 79251583732 scopus 로고    scopus 로고
    • Profiling Sex-specific piRNAs in Zebrafish
    • Zhou X, Zuo Z, Zhou F, Zhao W, Sakaguchi Y, et al. (2010) Profiling Sex-specific piRNAs in Zebrafish. Genetics 186: 1175-1185.
    • (2010) Genetics , vol.186 , pp. 1175-1185
    • Zhou, X.1    Zuo, Z.2    Zhou, F.3    Zhao, W.4    Sakaguchi, Y.5
  • 39
    • 34047154356 scopus 로고    scopus 로고
    • A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish
    • Houwing S, Kamminga LM, Berezikov E, Cronembold D, Girard A, et al. (2007) A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish. Cell 129: 69-82.
    • (2007) Cell , vol.129 , pp. 69-82
    • Houwing, S.1    Kamminga, L.M.2    Berezikov, E.3    Cronembold, D.4    Girard, A.5
  • 40
    • 79956204469 scopus 로고    scopus 로고
    • Identification of piRNAs in the central nervous system
    • Lee EJ, Banerjee S, Zhou H, Jammalamadaka A, Arcila M, et al. (2011) Identification of piRNAs in the central nervous system. RNA 17: 1090-1099.
    • (2011) RNA , vol.17 , pp. 1090-1099
    • Lee, E.J.1    Banerjee, S.2    Zhou, H.3    Jammalamadaka, A.4    Arcila, M.5
  • 41
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
    • Huang DW, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc 4: 44-57.
    • (2009) Nature Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 42
    • 79951555783 scopus 로고    scopus 로고
    • Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows
    • Sun X, Mei S, Tao H, Wang G, Su L, et al. (2011) Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows. BMC Genome 12: 111.
    • (2011) BMC Genome , vol.12 , pp. 111
    • Sun, X.1    Mei, S.2    Tao, H.3    Wang, G.4    Su, L.5
  • 45
    • 79959262495 scopus 로고    scopus 로고
    • Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    • Wei LQ, Yan LF, Wang T, (2011) Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. Genome Biol 12: R53.
    • (2011) Genome Biol , vol.12
    • Wei, L.Q.1    Yan, L.F.2    Wang, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.