Zygotic amplification of secondary piRNAs during silkworm embryogenesis

RNA

Volumn 17, Issue 7, 2011, Pages 1401-1407

  Kawaoka, Shinpei ^a   Arai, Yuji ^a   Kadota, Koji ^a   Suzuki, Yutaka ^b   Hara, Kahori ^a   Sugano, Sumio ^b   Shimizu, Kentaro ^a   Tomari, Yukihide ^b   Shimada, Toru ^a   Katsuma, Susumu ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Ping pong cycle; piRNA; Silkworm; Transposon

Indexed keywords

PIWI INTERACTING RNA;

ARTICLE; EMBRYO; EMBRYO DEVELOPMENT; GENE AMPLIFICATION; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; SILKWORM; TRANSPOSON; ZYGOTE;

ANIMALS; BOMBYX; CLUSTER ANALYSIS; EMBRYO, NONMAMMALIAN; EMBRYONIC DEVELOPMENT; FEMALE; GENE AMPLIFICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MICROARRAY ANALYSIS; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; RNA, MESSENGER, STORED; RNA, SMALL INTERFERING; ZYGOTE;

ANIMALIA; BOMBYX MORI;

EID: 79959293264     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2709411     Document Type: Article

References (26)

1. Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. 2008. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell 31: 785-799.
2. Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103. (Pubitemid 46427877)
3. Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ. 2008. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322: 1387-1392. (Pubitemid 352775252)
4. Gunawardane LS, Saito K, Nishida KM, Miyoshi K, Kawamura Y, Nagami T, Siomi H, Siomi MC. 2007. A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila. Science 315: 1587-1590. (Pubitemid 46449477)
5. Haase AD, Fenoglio S, Muerdter F, Guzzardo PM, Czech B, Pappin DJ, Chen C, Gordon A, Hannon GJ. 2010. Probing the initiation and effector phases of the somatic piRNA pathway in Drosophila. Genes Dev 24: 2499-2504.
6. Houwing S, Kamminga LM, Berezikov E, Cronembold D, Girard A, van den Elst H, Filippov DV, Blaser H, Raz E, Moens CB, et al. 2007. A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in zebrafish. Cell 129: 69-82. (Pubitemid 46509793)
7. Houwing S, Berezikov E, Ketting RF. 2008. Zili is required for germ cell differentiation and meiosis in zebrafish. EMBO J 27: 2702-2711.
8. Kawaoka S, Hayashi N, Katsuma S, Kishino H, Kohara Y, Mita K, Shimada T. 2008a. Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx mori. Insect Biochem Mol Biol 38: 1058-1065.
9. Kawaoka S, Minami K, Katsuma S, Mita K, Shimada T. 2008b. Developmentally synchronized expression of two Bombyx mori Piwi subfamily genes, SIWI and BmAGO3 in germ-line cells. Biochem Biophys Res Commun 367: 755-760.
10. Kawaoka S, Hayashi N, Suzuki Y, Abe H, Sugano S, Tomari Y, Shimada T, Katsuma S. 2009. The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. RNA 15: 1258-1264.
11. Klattenhoff C, Theurkauf W. 2008. Biogenesis and germline functions of piRNAs. Development 135: 3-9. (Pubitemid 351201476)
12. Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC. 2009. Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line. Genome Res 19: 1776-1785.
13. Li C, Vagin VV, Lee S, Xu J, Ma S, Xi H, Seitz H, Horwich MD, Syrzycka M, Honda BM, et al. 2009a. Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137: 509-521.
14. Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. 2009b. SOAP2: An improved ultrafast tool for short read alignment. Bioinformatics 25: 1966-1967.
15. Malone CD, Hannon GJ. 2009. Molecular evolution of piRNA and transposon control pathways in Drosophila. Cold Spring Harb Symp Quant Biol 74: 225-234.
16. Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, Sachidanandam R, Hannon GJ. 2009. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137: 522-535.
17. Nishida KM, Saito K, Mori T, Kawamura Y, Nagami-Okada T, Inagaki S, Siomi H, Siomi MC. 2007. Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad. RNA 13: 1911-1922. (Pubitemid 350005217)
18. Olivieri D, Sykora MM, Sachidanandam R, Mechtler K, Brennecke J. 2010. An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. EMBO J 29: 3301-3317.
19. Saito K, Nishida KM, Mori T, Kawamura Y, Miyoshi K, Nagami T, Siomi H, Siomi MC. 2006. Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev 20: 2214-2222.
20. Saito K, Inagaki S, Mituyama T, Kawamura Y, Ono Y, Sakota E, Kotani H, Asai K, Siomi H, Siomi MC. 2009. A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila. Nature 461: 1296-1299.
21. Saito K, Ishizu H, Komai M, Kotani H, Kawamura Y, Nishida KM, Siomi H, Siomi MC. 2010. Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila. Genes Dev 24: 2493-2498.
22. Schier AF. 2007. The maternal-zygotic transition: death and birth of RNAs. Science 316: 406-407. (Pubitemid 46651481)
23. Thomson T, Lin H. 2009. The biogenesis and function of PIWI proteins and piRNAs: progress and prospect. Annu Rev Cell Dev Biol 25: 355-376.
24. Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324. (Pubitemid 44480950)
25. Vastenhouw NL, Zhang Y, Woods IG, Imam F, Regev A, Liu XS, Rinn J, Schier AF. 2010. Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464: 922-926.
26. Yamauchi H, Yoshitake N. 1984. Developmental stages of ovarian follicles of the silkworm, Bombyx mori L. J Morphol 179: 21-31.