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Volumn 13, Issue 1, 2012, Pages

Characterization and gene expression analysis of the cir multi-gene family of plasmodium chabaudi chabaudi (AS)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CIR PROTEIN; PROTEIN; RNA; UNCLASSIFIED DRUG; MESSENGER RNA; PROTOZOAL PROTEIN; PROTOZOAL RNA;

EID: 84858995471     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-125     Document Type: Article
Times cited : (24)

References (75)
  • 1
    • 78149348505 scopus 로고    scopus 로고
    • Surface co-expression of two different PfEMP1 antigens on single plasmodium falciparum-infected erythrocytes facilitates binding to ICAM1 and PECAM1
    • 10.1371/journal.ppat.1001083, 2932717, 20824088
    • Joergensen L, Bengtsson DC, Bengtsson A, Ronander E, Berger SS, Turner L, Dalgaard MB, Cham GK, Victor ME, Lavstsen T, et al. Surface co-expression of two different PfEMP1 antigens on single plasmodium falciparum-infected erythrocytes facilitates binding to ICAM1 and PECAM1. PLoS Pathogens 2010, 6(9):e1001083. 10.1371/journal.ppat.1001083, 2932717, 20824088.
    • (2010) PLoS Pathogens , vol.6 , Issue.9
    • Joergensen, L.1    Bengtsson, D.C.2    Bengtsson, A.3    Ronander, E.4    Berger, S.S.5    Turner, L.6    Dalgaard, M.B.7    Cham, G.K.8    Victor, M.E.9    Lavstsen, T.10
  • 3
    • 0020787171 scopus 로고
    • Antigenic variation of Plasmodium knowlesi malaria: identification of the variant antigen on infected erythrocytes
    • 10.1073/pnas.80.13.4129, 394214, 6191331
    • Howard RJ, Barnwell JW, Kao V. Antigenic variation of Plasmodium knowlesi malaria: identification of the variant antigen on infected erythrocytes. Proc Natl Acad Sci USA 1983, 80(13):4129-4133. 10.1073/pnas.80.13.4129, 394214, 6191331.
    • (1983) Proc Natl Acad Sci USA , vol.80 , Issue.13 , pp. 4129-4133
    • Howard, R.J.1    Barnwell, J.W.2    Kao, V.3
  • 4
    • 59549094671 scopus 로고    scopus 로고
    • Rapid changes in transcription profiles of the Plasmodium yoelii yir multigene family in clonal populations: lack of epigenetic memory?
    • 10.1371/journal.pone.0004285, 2628738, 19173007
    • Cunningham D, Fonager J, Jarra W, Carret C, Preiser P, Langhorne J. Rapid changes in transcription profiles of the Plasmodium yoelii yir multigene family in clonal populations: lack of epigenetic memory?. PLoS One 2009, 4(1):e4285. 10.1371/journal.pone.0004285, 2628738, 19173007.
    • (2009) PLoS One , vol.4 , Issue.1
    • Cunningham, D.1    Fonager, J.2    Jarra, W.3    Carret, C.4    Preiser, P.5    Langhorne, J.6
  • 5
    • 0025169665 scopus 로고
    • Relationships between sequestration, antigenic variation and chronic parasitism in Plasmodium chabaudi chabaudi-a rodent malaria model
    • 10.1111/j.1365-3024.1990.tb00935.x, 2314922
    • Gilks CF, Walliker D, Newbold CI. Relationships between sequestration, antigenic variation and chronic parasitism in Plasmodium chabaudi chabaudi-a rodent malaria model. Parasite Immunology 1990, 12(1):45-64. 10.1111/j.1365-3024.1990.tb00935.x, 2314922.
    • (1990) Parasite Immunology , vol.12 , Issue.1 , pp. 45-64
    • Gilks, C.F.1    Walliker, D.2    Newbold, C.I.3
  • 6
    • 70349311420 scopus 로고    scopus 로고
    • Adhesion of Plasmodium falciparum-infected erythrocytes to human cells: molecular mechanisms and therapeutic implications
    • 2878476,2878476, 19467172
    • Rowe JA, Claessens A, Corrigan RA, Arman M. Adhesion of Plasmodium falciparum-infected erythrocytes to human cells: molecular mechanisms and therapeutic implications. Expert Reviews in Molecular Medicine 2009, 11:e16. 2878476,2878476, 19467172.
    • (2009) Expert Reviews in Molecular Medicine , vol.11
    • Rowe, J.A.1    Claessens, A.2    Corrigan, R.A.3    Arman, M.4
  • 7
    • 84884676244 scopus 로고    scopus 로고
    • Antigenic variation in Plasmodium falciparum
    • 10.1146/annurev.micro.61.080706.093134, 18785843
    • Scherf A, Lopez-Rubio JJ, Riviere L. Antigenic variation in Plasmodium falciparum. Annu Rev Microbiol 2008, 62:445-470. 10.1146/annurev.micro.61.080706.093134, 18785843.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 445-470
    • Scherf, A.1    Lopez-Rubio, J.J.2    Riviere, L.3
  • 8
    • 0022637057 scopus 로고
    • Antigens induced on erythrocytes by P. falciparum: Expression of diverse and conserved determinants
    • 10.1126/science.2417315, 2417315
    • Marsh K, Howard RJ. Antigens induced on erythrocytes by P. falciparum: Expression of diverse and conserved determinants. Science 1986, 231(4734):150-153. 10.1126/science.2417315, 2417315.
    • (1986) Science , vol.231 , Issue.4734 , pp. 150-153
    • Marsh, K.1    Howard, R.J.2
  • 9
    • 0024349561 scopus 로고
    • Antibodies to blood stage antigens of Plasmodium falciparum in rural Gambians and their relation to protection against infection
    • 10.1016/0035-9203(89)90478-1, 2694458
    • Marsh K, Otoo L, Hayes RJ, Carson DC, Greenwood BM. Antibodies to blood stage antigens of Plasmodium falciparum in rural Gambians and their relation to protection against infection. Transactions of the Royal Society of Tropical Medicine and Hygiene 1989, 83(3):293-303. 10.1016/0035-9203(89)90478-1, 2694458.
    • (1989) Transactions of the Royal Society of Tropical Medicine and Hygiene , vol.83 , Issue.3 , pp. 293-303
    • Marsh, K.1    Otoo, L.2    Hayes, R.J.3    Carson, D.C.4    Greenwood, B.M.5
  • 10
    • 0038797827 scopus 로고    scopus 로고
    • Ten families of variant genes encoded in subtelomeric regions of multiple chromosomes of Plasmodium chabaudi, a malaria species that undergoes antigenic variation in the laboratory mouse
    • 10.1046/j.1365-2958.2003.03491.x, 12787350
    • Fischer K, Chavchich M, Huestis R, Wilson DW, Kemp DJ, Saul A. Ten families of variant genes encoded in subtelomeric regions of multiple chromosomes of Plasmodium chabaudi, a malaria species that undergoes antigenic variation in the laboratory mouse. Mol Microbiol 2003, 48(5):1209-1223. 10.1046/j.1365-2958.2003.03491.x, 12787350.
    • (2003) Mol Microbiol , vol.48 , Issue.5 , pp. 1209-1223
    • Fischer, K.1    Chavchich, M.2    Huestis, R.3    Wilson, D.W.4    Kemp, D.J.5    Saul, A.6
  • 11
    • 0029739905 scopus 로고    scopus 로고
    • The var genes of Plasmodium falciparum are located in the subtelomeric region of most chromosomes
    • 452127, 8670911
    • Rubio JP, Thompson JK, Cowman AF. The var genes of Plasmodium falciparum are located in the subtelomeric region of most chromosomes. EMBO J 1996, 15(15):4069-4077. 452127, 8670911.
    • (1996) EMBO J , vol.15 , Issue.15 , pp. 4069-4077
    • Rubio, J.P.1    Thompson, J.K.2    Cowman, A.F.3
  • 12
    • 74849111057 scopus 로고    scopus 로고
    • The pir multigene family of Plasmodium: antigenic variation and beyond
    • 10.1016/j.molbiopara.2009.12.010, 20045030
    • Cunningham D, Lawton J, Jarra W, Preiser P, Langhorne J. The pir multigene family of Plasmodium: antigenic variation and beyond. Mol Biochem Parasitol 2010, 170(2):65-73. 10.1016/j.molbiopara.2009.12.010, 20045030.
    • (2010) Mol Biochem Parasitol , vol.170 , Issue.2 , pp. 65-73
    • Cunningham, D.1    Lawton, J.2    Jarra, W.3    Preiser, P.4    Langhorne, J.5
  • 13
    • 80051804179 scopus 로고    scopus 로고
    • Highly co-ordinated var gene expression and switching in clinical Plasmodium falciparum isolates from non-immune malaria patients
    • 10.1111/j.1462-5822.2011.01629.x, 21740496
    • Bachmann A, Predehl S, May J, Harder S, Burchard GD, Gilberger TW, Tannich E, Bruchhaus I. Highly co-ordinated var gene expression and switching in clinical Plasmodium falciparum isolates from non-immune malaria patients. Cellular Microbiology 2011, 13(9):1397-409. 10.1111/j.1462-5822.2011.01629.x, 21740496.
    • (2011) Cellular Microbiology , vol.13 , Issue.9 , pp. 1397-1409
    • Bachmann, A.1    Predehl, S.2    May, J.3    Harder, S.4    Burchard, G.D.5    Gilberger, T.W.6    Tannich, E.7    Bruchhaus, I.8
  • 14
    • 0347517765 scopus 로고    scopus 로고
    • Evidence for the importance of genetic structuring to the structural and functional specialization of the Plasmodium falciparum var gene family
    • 10.1046/j.1365-2958.2003.03814.x, 14651636
    • Kraemer SM, Smith JD. Evidence for the importance of genetic structuring to the structural and functional specialization of the Plasmodium falciparum var gene family. Mol Microbiol 2003, 50(5):1527-1538. 10.1046/j.1365-2958.2003.03814.x, 14651636.
    • (2003) Mol Microbiol , vol.50 , Issue.5 , pp. 1527-1538
    • Kraemer, S.M.1    Smith, J.D.2
  • 15
    • 85044705529 scopus 로고    scopus 로고
    • Sub-grouping of Plasmodium falciparum 3D7 var genes based on sequence analysis of coding and non-coding regions
    • 10.1186/1475-2875-2-27, 222925, 14565852
    • Lavstsen T, Salanti A, Jensen AT, Arnot DE, Theander TG. Sub-grouping of Plasmodium falciparum 3D7 var genes based on sequence analysis of coding and non-coding regions. Malar J 2003, 2:27. 10.1186/1475-2875-2-27, 222925, 14565852.
    • (2003) Malar J , vol.2 , pp. 27
    • Lavstsen, T.1    Salanti, A.2    Jensen, A.T.3    Arnot, D.E.4    Theander, T.G.5
  • 16
    • 34548319689 scopus 로고    scopus 로고
    • Variant proteins of the Plasmodium falciparum RIFIN family show distinct subcellular localization and developmental expression patterns
    • 10.1016/j.molbiopara.2007.07.011, 17719658
    • Petter M, Haeggstrom M, Khattab A, Fernandez V, Klinkert MQ, Wahlgren M. Variant proteins of the Plasmodium falciparum RIFIN family show distinct subcellular localization and developmental expression patterns. Mol Biochem Parasitol 2007, 156(1):51-61. 10.1016/j.molbiopara.2007.07.011, 17719658.
    • (2007) Mol Biochem Parasitol , vol.156 , Issue.1 , pp. 51-61
    • Petter, M.1    Haeggstrom, M.2    Khattab, A.3    Fernandez, V.4    Klinkert, M.Q.5    Wahlgren, M.6
  • 17
    • 39849095227 scopus 로고    scopus 로고
    • Sub-grouping and sub-functionalization of the RIFIN multi-copy protein family
    • 10.1186/1471-2164-9-19, 2257938, 18197962
    • Joannin N, Abhiman S, Sonnhammer EL, Wahlgren M. Sub-grouping and sub-functionalization of the RIFIN multi-copy protein family. BMC Genomics 2008, 9:19. 10.1186/1471-2164-9-19, 2257938, 18197962.
    • (2008) BMC Genomics , vol.9 , pp. 19
    • Joannin, N.1    Abhiman, S.2    Sonnhammer, E.L.3    Wahlgren, M.4
  • 18
    • 6344263537 scopus 로고    scopus 로고
    • Plasmodium interspersed repeats: the major multigene superfamily of malaria parasites
    • 10.1093/nar/gkh907, 528792, 15507685
    • Janssen CS, Phillips RS, Turner CM, Barrett MP. Plasmodium interspersed repeats: the major multigene superfamily of malaria parasites. Nucleic Acids Res 2004, 32(19):5712-5720. 10.1093/nar/gkh907, 528792, 15507685.
    • (2004) Nucleic Acids Res , vol.32 , Issue.19 , pp. 5712-5720
    • Janssen, C.S.1    Phillips, R.S.2    Turner, C.M.3    Barrett, M.P.4
  • 21
    • 12744261341 scopus 로고    scopus 로고
    • Variant genes and the spleen in Plasmodium vivax malaria
    • 10.1016/j.ijpara.2004.10.012, 15582531
    • del Portillo HA, Lanzer M, Rodriguez-Malaga S, Zavala F, Fernandez-Becerra C. Variant genes and the spleen in Plasmodium vivax malaria. Int J Parasitol 2004, 34(13-14):1547-1554. 10.1016/j.ijpara.2004.10.012, 15582531.
    • (2004) Int J Parasitol , vol.34 , Issue.13-14 , pp. 1547-1554
    • del Portillo, H.A.1    Lanzer, M.2    Rodriguez-Malaga, S.3    Zavala, F.4    Fernandez-Becerra, C.5
  • 23
    • 34548305256 scopus 로고    scopus 로고
    • Transcription and alternative splicing in the yir multigene family of the malaria parasite Plasmodium y. yoelii: identification of motifs suggesting epigenetic and post-transcriptional control of RNA expression
    • 10.1016/j.molbiopara.2007.06.006, 17692398
    • Fonager J, Cunningham D, Jarra W, Koernig S, Henneman AA, Langhorne J, Preiser P. Transcription and alternative splicing in the yir multigene family of the malaria parasite Plasmodium y. yoelii: identification of motifs suggesting epigenetic and post-transcriptional control of RNA expression. Molecular and Biochemical Parasitology 2007, 156(1):1-11. 10.1016/j.molbiopara.2007.06.006, 17692398.
    • (2007) Molecular and Biochemical Parasitology , vol.156 , Issue.1 , pp. 1-11
    • Fonager, J.1    Cunningham, D.2    Jarra, W.3    Koernig, S.4    Henneman, A.A.5    Langhorne, J.6    Preiser, P.7
  • 24
    • 55849142984 scopus 로고    scopus 로고
    • The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites
    • 10.1073/pnas.0807404105, 2571024, 18852452
    • Bozdech Z, Mok S, Hu G, Imwong M, Jaidee A, Russell B, Ginsburg H, Nosten F, Day NP, White NJ, et al. The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites. Proc Natl Acad Sci USA 2008, 105(42):16290-16295. 10.1073/pnas.0807404105, 2571024, 18852452.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.42 , pp. 16290-16295
    • Bozdech, Z.1    Mok, S.2    Hu, G.3    Imwong, M.4    Jaidee, A.5    Russell, B.6    Ginsburg, H.7    Nosten, F.8    Day, N.P.9    White, N.J.10
  • 25
    • 0020353888 scopus 로고
    • Plasmodium chabaudi: antigenic variation during recrudescent parasitaemias in mice
    • 10.1016/0014-4894(82)90038-8, 7151940
    • McLean SA, Pearson CD, Phillips RS. Plasmodium chabaudi: antigenic variation during recrudescent parasitaemias in mice. Exp Parasitol 1982, 54(3):296-302. 10.1016/0014-4894(82)90038-8, 7151940.
    • (1982) Exp Parasitol , vol.54 , Issue.3 , pp. 296-302
    • McLean, S.A.1    Pearson, C.D.2    Phillips, R.S.3
  • 26
    • 0020434347 scopus 로고
    • Plasmodium chabaudi: relationship between the occurrence of recrudescent parasitaemias in mice and the effective levels of acquired immunity
    • 10.1016/0014-4894(82)90129-1, 6751842
    • McLean SA, Pearson CD, Phillips RS. Plasmodium chabaudi: relationship between the occurrence of recrudescent parasitaemias in mice and the effective levels of acquired immunity. Exp Parasitol 1982, 54(2):213-221. 10.1016/0014-4894(82)90129-1, 6751842.
    • (1982) Exp Parasitol , vol.54 , Issue.2 , pp. 213-221
    • McLean, S.A.1    Pearson, C.D.2    Phillips, R.S.3
  • 27
    • 0022462444 scopus 로고
    • Antigenic variation in Plasmodium chabaudi: analysis of parent and variant populations by cloning
    • 10.1111/j.1365-3024.1986.tb00858.x, 3774374
    • McLean SA, Pearson CD, Phillips RS. Antigenic variation in Plasmodium chabaudi: analysis of parent and variant populations by cloning. Parasite Immunology 1986, 8(5):415-424. 10.1111/j.1365-3024.1986.tb00858.x, 3774374.
    • (1986) Parasite Immunology , vol.8 , Issue.5 , pp. 415-424
    • McLean, S.A.1    Pearson, C.D.2    Phillips, R.S.3
  • 28
    • 0033918169 scopus 로고    scopus 로고
    • Plasmodium chabaudi-infected erythrocytes adhere to CD36 and bind to microvascular endothelial cells in an organ-specific way
    • 10.1128/IAI.68.7.4135-4144.2000, 101711, 10858230
    • Mota MM, Jarra W, Hirst E, Patnaik PK, Holder AA. Plasmodium chabaudi-infected erythrocytes adhere to CD36 and bind to microvascular endothelial cells in an organ-specific way. Infect Immun 2000, 68(7):4135-4144. 10.1128/IAI.68.7.4135-4144.2000, 101711, 10858230.
    • (2000) Infect Immun , vol.68 , Issue.7 , pp. 4135-4144
    • Mota, M.M.1    Jarra, W.2    Hirst, E.3    Patnaik, P.K.4    Holder, A.A.5
  • 29
    • 41049085733 scopus 로고    scopus 로고
    • A large gene family for putative variant antigens shared by human and rodent malaria parasites
    • 10.1098/rspb.2001.1903, 1690903, 11886633
    • Janssen CS, Barrett MP, Turner CM, Phillips RS. A large gene family for putative variant antigens shared by human and rodent malaria parasites. Proceedings of the Royal Society B: Biological Sciences 2002, 269(1489):431-436. 10.1098/rspb.2001.1903, 1690903, 11886633.
    • (2002) Proceedings of the Royal Society B: Biological Sciences , vol.269 , Issue.1489 , pp. 431-436
    • Janssen, C.S.1    Barrett, M.P.2    Turner, C.M.3    Phillips, R.S.4
  • 30
    • 80052861360 scopus 로고    scopus 로고
    • Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family
    • 10.1186/1475-2875-10-272, 3189184, 21929749
    • Ebbinghaus P, Krucken J. Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family. Malaria Journal 2011, 10:272. 10.1186/1475-2875-10-272, 3189184, 21929749.
    • (2011) Malaria Journal , vol.10 , pp. 272
    • Ebbinghaus, P.1    Krucken, J.2
  • 32
    • 56649123520 scopus 로고    scopus 로고
    • Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
    • 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581
    • Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, Parkhill J, Rajandream MA. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 2008, 24(23):2672-2676. 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581.
    • (2008) Bioinformatics , vol.24 , Issue.23 , pp. 2672-2676
    • Carver, T.1    Berriman, M.2    Tivey, A.3    Patel, C.4    Bohme, U.5    Barrell, B.G.6    Parkhill, J.7    Rajandream, M.A.8
  • 33
    • 84863001733 scopus 로고    scopus 로고
    • The Plasmodium chabaudi homepage in GeneDB
    • The Plasmodium chabaudi homepage in GeneDB. , http://www.genedb.org/Homepage/Pchabaudi
  • 36
    • 0031813130 scopus 로고    scopus 로고
    • Pfam: multiple sequence alignments and HMM-profiles of protein domains
    • 10.1093/nar/26.1.320, 147209, 9399864
    • Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R. Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res 1998, 26(1):320-322. 10.1093/nar/26.1.320, 147209, 9399864.
    • (1998) Nucleic Acids Res , vol.26 , Issue.1 , pp. 320-322
    • Sonnhammer, E.L.1    Eddy, S.R.2    Birney, E.3    Bateman, A.4    Durbin, R.5
  • 38
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: a sequence logo generator
    • 10.1101/gr.849004, 419797, 15173120
    • Crooks GE, Hon G, Chandonia JM, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004, 14(6):1188-1190. 10.1101/gr.849004, 419797, 15173120.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 39
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 40
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: analyzing and visualizing evolutionary data
    • 10.1093/bioinformatics/14.1.68, 9520503
    • Huson DH. SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 1998, 14(1):68-73. 10.1093/bioinformatics/14.1.68, 9520503.
    • (1998) Bioinformatics , vol.14 , Issue.1 , pp. 68-73
    • Huson, D.H.1
  • 41
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: an agglomerative method for the construction of phylogenetic networks
    • Bryant D, Moulton V. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 2004, 21(2):255-265.
    • (2004) Mol Biol Evol , vol.21 , Issue.2 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 43
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
    • Web Server
    • Guindon S, Lethiec F, Duroux P, Gascuel O. PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 2005, (33 Web Server):W557-W559.
    • (2005) Nucleic Acids Res , Issue.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 44
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • 10.1093/molbev/msn067, 18367465
    • Le SQ, Gascuel O. An improved general amino acid replacement matrix. Mol Biol Evol 2008, 25(7):1307-1320. 10.1093/molbev/msn067, 18367465.
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 45
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • 10.1080/10635150600755453, 16785212
    • Anisimova M, Gascuel O. Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 2006, 55(4):539-552. 10.1080/10635150600755453, 16785212.
    • (2006) Syst Biol , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 47
    • 4444299144 scopus 로고    scopus 로고
    • TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments
    • 10.1093/bioinformatics/bth155, 14988107
    • Milne I, Wright F, Rowe G, Marshall DF, Husmeier D, McGuire G. TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 2004, 20(11):1806-1807. 10.1093/bioinformatics/bth155, 14988107.
    • (2004) Bioinformatics , vol.20 , Issue.11 , pp. 1806-1807
    • Milne, I.1    Wright, F.2    Rowe, G.3    Marshall, D.F.4    Husmeier, D.5    McGuire, G.6
  • 48
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • 10.1093/bioinformatics/btn575, 2638937, 18984599
    • Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 2009, 25(1):126-127. 10.1093/bioinformatics/btn575, 2638937, 18984599.
    • (2009) Bioinformatics , vol.25 , Issue.1 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5    Marshall, D.F.6    Wright, F.7
  • 49
    • 13444302764 scopus 로고    scopus 로고
    • FunShift: a database of function shift analysis on protein subfamilies
    • Database
    • Abhiman S, Sonnhammer EL. FunShift: a database of function shift analysis on protein subfamilies. Nucleic Acids Res 2005, (33 Database):D197-D200.
    • (2005) Nucleic Acids Res , Issue.33
    • Abhiman, S.1    Sonnhammer, E.L.2
  • 50
    • 0035807886 scopus 로고    scopus 로고
    • A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins
    • 10.1073/pnas.251526398, 64713, 11734650
    • Knudsen B, Miyamoto MM. A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins. Proc Natl Acad Sci USA 2001, 98(25):14512-14517. 10.1073/pnas.251526398, 64713, 11734650.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.25 , pp. 14512-14517
    • Knudsen, B.1    Miyamoto, M.M.2
  • 51
    • 0024455588 scopus 로고
    • Production of interferon-gamma during infection of mice with Plasmodium chabaudi chabaudi
    • 10.1016/S0171-2985(89)80041-5, 2515153
    • Slade SJ, Langhorne J. Production of interferon-gamma during infection of mice with Plasmodium chabaudi chabaudi. Immunobiology 1989, 179(4-5):353-365. 10.1016/S0171-2985(89)80041-5, 2515153.
    • (1989) Immunobiology , vol.179 , Issue.4-5 , pp. 353-365
    • Slade, S.J.1    Langhorne, J.2
  • 53
    • 0030001823 scopus 로고    scopus 로고
    • Gene-targeted mice lacking B cells are unable to eliminate a blood stage malaria infection
    • von der Weid T, Honarvar N, Langhorne J. Gene-targeted mice lacking B cells are unable to eliminate a blood stage malaria infection. J Immunol 1996, 156(7):2510-2516.
    • (1996) J Immunol , vol.156 , Issue.7 , pp. 2510-2516
    • von der Weid, T.1    Honarvar, N.2    Langhorne, J.3
  • 54
    • 84862980996 scopus 로고    scopus 로고
    • Reliable RNA preparation for Plasmodium falciparum
    • Manassas, Virginia, Ljungström I, Perlmann H, Schlichtherle M, Artur Scherf A, Wahlgren M, Fourth
    • Kyes S. Reliable RNA preparation for Plasmodium falciparum. Methods in Malaria Research 2004, 175-178. Manassas, Virginia, Ljungström I, Perlmann H, Schlichtherle M, Artur Scherf A, Wahlgren M, Fourth.
    • (2004) Methods in Malaria Research , pp. 175-178
    • Kyes, S.1
  • 55
    • 77649290642 scopus 로고    scopus 로고
    • Defining species specific genome differences in malaria parasites
    • 10.1186/1471-2164-11-128, 2837034, 20175934
    • Liew KJL, Hu G, Bozdech Z, Peter PR. Defining species specific genome differences in malaria parasites. BMC Genomics 2010, 11(1):128. 10.1186/1471-2164-11-128, 2837034, 20175934.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 128
    • Liew, K.J.L.1    Hu, G.2    Bozdech, Z.3    Peter, P.R.4
  • 56
    • 4243071596 scopus 로고    scopus 로고
    • The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
    • 176545, 12929205
    • Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biology 2003, 1(1):E5. 176545, 12929205.
    • (2003) PLoS Biology , vol.1 , Issue.1
    • Bozdech, Z.1    Llinas, M.2    Pulliam, B.L.3    Wong, E.D.4    Zhu, J.5    DeRisi, J.L.6
  • 57
    • 77950265905 scopus 로고    scopus 로고
    • New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq
    • 10.1111/j.1365-2958.2009.07026.x, 2859250, 20141604
    • Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Bohme U, Lemieux J, Barrell B, Pain A, Berriman M, et al. New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol 2010, 76(1):12-24. 10.1111/j.1365-2958.2009.07026.x, 2859250, 20141604.
    • (2010) Mol Microbiol , vol.76 , Issue.1 , pp. 12-24
    • Otto, T.D.1    Wilinski, D.2    Assefa, S.3    Keane, T.M.4    Sarry, L.R.5    Bohme, U.6    Lemieux, J.7    Barrell, B.8    Pain, A.9    Berriman, M.10
  • 58
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • 10.1093/bioinformatics/btp120, 2672628, 19289445
    • Trapnell C, Pachter L, Salzberg SL. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25(9):1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 59
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nature Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 61
    • 84862980997 scopus 로고    scopus 로고
    • Plotcon
    • Plotcon. , http://emboss.bioinformatics.nl/cgibin/emboss/plotcon
  • 62
    • 17044401319 scopus 로고    scopus 로고
    • Networks in phylogenetic analysis: new tools for population biology
    • 10.1016/j.ijpara.2005.02.007, 15826648
    • Morrison DA. Networks in phylogenetic analysis: new tools for population biology. Int J Parasitol 2005, 35(5):567-582. 10.1016/j.ijpara.2005.02.007, 15826648.
    • (2005) Int J Parasitol , vol.35 , Issue.5 , pp. 567-582
    • Morrison, D.A.1
  • 63
    • 6944242982 scopus 로고    scopus 로고
    • A SICAvar switching event in Plasmodium knowlesi is associated with the DNA rearrangement of conserved 3' non-coding sequences
    • 10.1016/j.molbiopara.2004.05.017, 15500914
    • Corredor V, Meyer EV, Lapp S, Corredor-Medina C, Huber CS, Evans AG, Barnwell JW, Galinski MR. A SICAvar switching event in Plasmodium knowlesi is associated with the DNA rearrangement of conserved 3' non-coding sequences. Mol Biochem Parasitol 2004, 138(1):37-49. 10.1016/j.molbiopara.2004.05.017, 15500914.
    • (2004) Mol Biochem Parasitol , vol.138 , Issue.1 , pp. 37-49
    • Corredor, V.1    Meyer, E.V.2    Lapp, S.3    Corredor-Medina, C.4    Huber, C.S.5    Evans, A.G.6    Barnwell, J.W.7    Galinski, M.R.8
  • 64
    • 44349099316 scopus 로고    scopus 로고
    • Frequent recombination events generate diversity within the multi-copy variant antigen gene families of Plasmodium falciparum
    • 10.1016/j.ijpara.2008.01.010, 2441941, 18395207
    • Frank M, Kirkman L, Costantini D, Sanyal S, Lavazec C, Templeton TJ, Deitsch KW. Frequent recombination events generate diversity within the multi-copy variant antigen gene families of Plasmodium falciparum. Int J Parasitol 2008, 38(10):1099-1109. 10.1016/j.ijpara.2008.01.010, 2441941, 18395207.
    • (2008) Int J Parasitol , vol.38 , Issue.10 , pp. 1099-1109
    • Frank, M.1    Kirkman, L.2    Costantini, D.3    Sanyal, S.4    Lavazec, C.5    Templeton, T.J.6    Deitsch, K.W.7
  • 65
    • 0029785398 scopus 로고    scopus 로고
    • TreeBASE: the roots of phylogeny
    • Morell V. TreeBASE: the roots of phylogeny. Science 1996, 273:569-600.
    • (1996) Science , vol.273 , pp. 569-600
    • Morell, V.1
  • 67
    • 0001354740 scopus 로고
    • TreeBASE: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life
    • Sanderson MJ, Donoghue MJ, Piel W, Eriksson T. TreeBASE: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. American Journal of Botany 1994, 81(6):183.
    • (1994) American Journal of Botany , vol.81 , Issue.6 , pp. 183
    • Sanderson, M.J.1    Donoghue, M.J.2    Piel, W.3    Eriksson, T.4
  • 68
    • 77952581999 scopus 로고    scopus 로고
    • Induction of an IL7-R + c-Kit hi myelolymphoid progenitor critically dependent on IFN-γ signaling during acute malaria
    • 10.1038/ni.1869, 20431620
    • Belyaev NN, Brown DE, Diaz AIG, Rae A, Jarra W, Thompson J, Langhorne J, Potocnik AJ. Induction of an IL7-R + c-Kit hi myelolymphoid progenitor critically dependent on IFN-γ signaling during acute malaria. Nat Immunol 2010, 11(6):477-485. 10.1038/ni.1869, 20431620.
    • (2010) Nat Immunol , vol.11 , Issue.6 , pp. 477-485
    • Belyaev, N.N.1    Brown, D.E.2    Diaz, A.I.G.3    Rae, A.4    Jarra, W.5    Thompson, J.6    Langhorne, J.7    Potocnik, A.J.8
  • 69
    • 79960035973 scopus 로고    scopus 로고
    • Transformation of the rodent malaria parasite Plasmodium chabaudi
    • 10.1038/nprot.2011.313, 21455190
    • Spence PJ, Cunningham D, Jarra W, Lawton J, Langhorne J, Thompson J. Transformation of the rodent malaria parasite Plasmodium chabaudi. Nat Protoc 2011, 6(4):553-561. 10.1038/nprot.2011.313, 21455190.
    • (2011) Nat Protoc , vol.6 , Issue.4 , pp. 553-561
    • Spence, P.J.1    Cunningham, D.2    Jarra, W.3    Lawton, J.4    Langhorne, J.5    Thompson, J.6
  • 70
    • 76249109239 scopus 로고    scopus 로고
    • Migrating monocytes recruited to the spleen play an important role in control of blood stage malaria
    • 10.1182/blood-2009-04-217489, 19837977
    • Sponaas AM, Do Rosario APF, Voisine C, Mastelic B, Thompson J, Koernig S, Jarra W, Renia L, Mauduit M, Potocnik AJ, et al. Migrating monocytes recruited to the spleen play an important role in control of blood stage malaria. Blood 2009, 114(27):5522-5531. 10.1182/blood-2009-04-217489, 19837977.
    • (2009) Blood , vol.114 , Issue.27 , pp. 5522-5531
    • Sponaas, A.M.1    Do Rosario, A.P.F.2    Voisine, C.3    Mastelic, B.4    Thompson, J.5    Koernig, S.6    Jarra, W.7    Renia, L.8    Mauduit, M.9    Potocnik, A.J.10
  • 71
    • 79251485291 scopus 로고    scopus 로고
    • Effector memory Th1 CD4 T cells are maintained in a mouse model of chronic malaria
    • 10.1371/journal.ppat.1001208, 2991260, 21124875
    • Stephens R, Langhorne J. Effector memory Th1 CD4 T cells are maintained in a mouse model of chronic malaria. PLoS Pathogens 2010, 6(11):e1001208. 10.1371/journal.ppat.1001208, 2991260, 21124875.
    • (2010) PLoS Pathogens , vol.6 , Issue.11
    • Stephens, R.1    Langhorne, J.2
  • 72
    • 0029070914 scopus 로고
    • The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes
    • 10.1016/0092-8674(95)90055-1, 7606788
    • Su XZ, Heatwole VM, Wertheimer SP, Guinet F, Herrfeldt JA, Peterson DS, Ravetch JA, Wellems TE. The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes. Cell 1995, 82(1):89-100. 10.1016/0092-8674(95)90055-1, 7606788.
    • (1995) Cell , vol.82 , Issue.1 , pp. 89-100
    • Su, X.Z.1    Heatwole, V.M.2    Wertheimer, S.P.3    Guinet, F.4    Herrfeldt, J.A.5    Peterson, D.S.6    Ravetch, J.A.7    Wellems, T.E.8
  • 73
    • 0034780523 scopus 로고    scopus 로고
    • Antigenic variation at the infected red cell surface in malaria
    • 10.1146/annurev.micro.55.1.673, 11544371
    • Kyes S, Horrocks P, Newbold C. Antigenic variation at the infected red cell surface in malaria. Annual Review of Microbiology 2001, 55:673-707. 10.1146/annurev.micro.55.1.673, 11544371.
    • (2001) Annual Review of Microbiology , vol.55 , pp. 673-707
    • Kyes, S.1    Horrocks, P.2    Newbold, C.3
  • 74
    • 61449124039 scopus 로고    scopus 로고
    • The Plasmodium falciparum STEVOR multigene family mediates antigenic variation of the infected erythrocyte
    • 10.1371/journal.ppat.1000307, 2637975, 19229319
    • Niang M, Xue YY, Preiser PR. The Plasmodium falciparum STEVOR multigene family mediates antigenic variation of the infected erythrocyte. PLoS Pathogens 2009, 5(2):e1000307. 10.1371/journal.ppat.1000307, 2637975, 19229319.
    • (2009) PLoS Pathogens , vol.5 , Issue.2
    • Niang, M.1    Xue, Y.Y.2    Preiser, P.R.3


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