-
1
-
-
70349665213
-
Substrate interactions and promiscuity in a viral DNA packaging motor
-
Aathavan K, Politzer AT, Kaplan A, Moffi tt JR, Chemla YR, Grimes S, Jardine PJ, Anderson DL, Bustamante C (2009) Substrate interactions and promiscuity in a viral DNA packaging motor. Nature 461(7264):669-673
-
(2009)
Nature
, vol.461
, Issue.7264
, pp. 669-673
-
-
Aathavan, K.1
Politzer, A.T.2
Kaplan, A.3
Moffitt, J.R.4
Chemla, Y.R.5
Grimes, S.6
Jardine, P.J.7
Anderson, D.L.8
Bustamante, C.9
-
2
-
-
0028114231
-
Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria
-
Abrahams JP, Leslie AG, Lutter R, Walker JE (1994) Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria. Nature 370(6491):621-628
-
(1994)
Nature
, vol.370
, Issue.6491
, pp. 621-628
-
-
Abrahams, J.P.1
Leslie, A.G.2
Lutter, R.3
Walker, J.E.4
-
3
-
-
34147110201
-
Quasi-Atomic Model of Bacteriophage T7 Procapsid Shell: Insights into the Structure and Evolution of a Basic Fold
-
DOI 10.1016/j.str.2007.03.004, PII S0969212607001116
-
Agirrezabala X, Velazquez-Muriel JA, Gomez-Puertas P, Scheres SH, Carazo JM, Carrascosa JL (2007) Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold. Structure 15(4): 461-472 (Pubitemid 46553832)
-
(2007)
Structure
, vol.15
, Issue.4
, pp. 461-472
-
-
Agirrezabala, X.1
Velazquez-Muriel, J.A.2
Gomez-Puertas, P.3
Scheres, S.H.W.4
Carazo, J.M.5
Carrascosa, J.L.6
-
4
-
-
0002101099
-
Morphogenesis of bacteriophage phi29
-
Hoch JA, Losick R, Sonenshein AL (eds) ASM Press, Washington, DC
-
Anderson DL, Reilly BE (1993) Morphogenesis of bacteriophage phi29. In: Hoch JA, Losick R, Sonenshein AL (eds) Bacillus subtilis and other gram positive bacteria: physiology, biochemistry and molecular genetics. ASM Press, Washington, DC, pp 859-867
-
(1993)
Bacillus Subtilis and Other Gram Positive Bacteria: Physiology, Biochemistry and Molecular Genetics
, pp. 859-867
-
-
Anderson, D.L.1
Reilly, B.E.2
-
5
-
-
34247356107
-
Alanine Scanning and Fe-BABE Probing of the Bacteriophage ø29 Prohead RNA-Connector Interaction
-
DOI 10.1016/j.jmb.2007.03.033, PII S0022283607003750
-
Atz R, Ma S, Gao J, Anderson DL, Grimes S (2007) Alanine scanning and Fe-BABE probing of the bacteriophage '29 prohead RNA-connector interaction. J Mol Biol 369(1):239-248 (Pubitemid 46635444)
-
(2007)
Journal of Molecular Biology
, vol.369
, Issue.1
, pp. 239-248
-
-
Atz, R.1
Ma, S.2
Gao, J.3
Anderson, D.L.4
Grimes, S.5
-
6
-
-
0025614359
-
Phylogenetic analysis and secondary structure of the Bacillus subtilis bacteriophage RNA required for DNA packaging
-
Bailey S, Wichitwechkarn J, Johnson D, Reilly BE, Anderson DL, Bodley JW (1990) Phylogenetic analysis and secondary structure of the Bacillus subtilis bacteriophage RNA required for DNA packaging. J Biol Chem 265(36): 22365-22370 (Pubitemid 120014310)
-
(1990)
Journal of Biological Chemistry
, vol.265
, Issue.36
, pp. 22365-22370
-
-
Bailey, S.1
Wichitwechkarn, J.2
Johnson, D.3
Reilly, B.E.4
Anderson, D.L.5
Bodley, J.W.6
-
7
-
-
0032712359
-
Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs
-
table of contents
-
Baker TS, Olson NH, Fuller SD (1999) Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol Mol Biol Rev 63(4):862-922, table of contents
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, Issue.4
, pp. 862-922
-
-
Baker, T.S.1
Olson, N.H.2
Fuller, S.D.3
-
8
-
-
33745190954
-
Portal fusion protein constraints on function in DNA packaging of bacteriophage T4
-
Baumann RG, Mullaney J, Black LW (2006) Portal fusion protein constraints on function in DNA packaging of bacteriophage T4. Mol Microbiol 61(1):16-32
-
(2006)
Mol Microbiol
, vol.61
, Issue.1
, pp. 16-32
-
-
Baumann, R.G.1
Mullaney, J.2
Black, L.W.3
-
9
-
-
0020694653
-
Morphogenesis of bacteriophage φ29 of Bacillus subtilis: Oriented and quantized in vitro packaging of DNA protein gp3
-
Bjornsti MA, Reilly BE, Anderson DL (1983) Morphogenesis of bacteriophage phi 29 of Bacillus subtilis : oriented and quantized in vitro packaging of DNA protein gp3. J Virol 45(1):383-396 (Pubitemid 13166313)
-
(1983)
Journal of Virology
, vol.45
, Issue.1
, pp. 383-396
-
-
Bjornsti, M.A.1
Reilly, B.E.2
Anderson, D.L.3
-
10
-
-
0021269756
-
Bacteriophage φ29 proteins required for in vitro DNA-gp3 packaging
-
Bjornsti MA, Reilly BE, Anderson DL (1984) Bacteriophage phi 29 proteins required for in vitro DNA-gp3 packaging. J Virol 50(3):766-772 (Pubitemid 14104261)
-
(1984)
Journal of Virology
, vol.50
, Issue.3
, pp. 766-772
-
-
Bjornsti, M.A.1
Reilly, B.E.2
Anderson, D.L.3
-
11
-
-
0029879312
-
Relating structure to function in φ29 DNA polymerase
-
DOI 10.1074/jbc.271.15.8509
-
Blanco L, Salas M (1996) Relating structure to function in phi29 DNA polymerase. J Biol Chem 271(15):8509-8512 (Pubitemid 26123264)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.15
, pp. 8509-8512
-
-
Blanco, L.1
Salas, M.2
-
12
-
-
0034659905
-
2+ADP and aluminium fluoride
-
DOI 10.1016/S0969-2126(00)00145-3
-
Braig K, Menz RI, Montgomery MG, Leslie AG, Walker JE (2000) Structure of bovine mitochondrial F(1)-ATPase inhibited by Mg(2+) ADP and aluminium fl uoride. Structure 8(6):567-573 (Pubitemid 30409309)
-
(2000)
Structure
, vol.8
, Issue.6
, pp. 567-573
-
-
Braig, K.1
Menz, R.I.2
Montgomery, M.G.3
Leslie, A.G.4
Walker, J.E.5
-
13
-
-
48749086251
-
Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems
-
Burroughs AM, Iyer LM, Aravind L (2007) Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems. Genome Dyn 3:48-65
-
(2007)
Genome Dyn
, vol.3
, pp. 48-65
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
14
-
-
0017594208
-
Assembly of Bacillus subtilis phage Phi29. 1. Mutants in the cistrons coding for the structural proteins
-
Camacho A, Jimenez F, De La Torre J, Carrascosa JL, Mellado RP, Vasquez C, Vinuela E, Salas M (1977) Assembly of Bacillus subtilis phage phi29. 1. Mutants in the cistrons coding for the structural proteins. Eur J Biochem 73(1):39-55 (Pubitemid 8044262)
-
(1977)
European Journal of Biochemistry
, vol.73
, Issue.1
, pp. 39-55
-
-
Camacho, A.1
Jimenez, F.2
De La Torre, J.3
-
15
-
-
24144478521
-
Mechanism of force generation of a viral DNA packaging motor
-
DOI 10.1016/j.cell.2005.06.024, PII S0092867405006434
-
Chemla YR, Aathavan K, Michaelis J, Grimes S, Jardine PJ, Anderson DL, Bustamante C (2005) Mechanism of force generation of a viral DNA packaging motor. Cell 122(5):683-692 (Pubitemid 41242634)
-
(2005)
Cell
, vol.122
, Issue.5
, pp. 683-692
-
-
Chemla, Y.R.1
Aathavan, K.2
Michaelis, J.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
16
-
-
0032981057
-
Sequence requirement for hand-in-hand interaction in formation of RNA dimers and hexamers to gear φ29 DNA translocation motor
-
DOI 10.1017/S1355838299990350
-
Chen C, Zhang C, Guo P (1999) Sequence requirement for hand-in-hand interaction in formation of RNA dimers and hexamers to gear phi29 DNA translocation motor. RNA 5(6):805-818 (Pubitemid 29283782)
-
(1999)
RNA
, vol.5
, Issue.6
, pp. 805-818
-
-
Chen, C.1
Zhang, C.2
Guo, P.3
-
17
-
-
0034625371
-
A dimer as a building block in assembling RNA: A hexamer that gears bacterial virus phi29 DNA-translocating machinery
-
DOI 10.1074/jbc.M909662199
-
Chen C, Sheng S, Shao Z, Guo P (2000) A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery. J Biol Chem 275(23):17510-17516 (Pubitemid 30430792)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.23
, pp. 17510-17516
-
-
Chen, C.1
Sheng, S.2
Shao, Z.3
Guo, P.4
-
18
-
-
79952163890
-
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
-
Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W (2011) Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proc Natl Acad Sci USA 108(4):1355-1360
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.4
, pp. 1355-1360
-
-
Chen, D.H.1
Baker, M.L.2
Hryc, C.F.3
Dimaio, F.4
Jakana, J.5
Wu, W.6
Dougherty, M.7
Haase-Pettingell, C.8
Schmid, M.F.9
Jiang, W.10
Baker, D.11
King, J.A.12
Chiu, W.13
-
19
-
-
62049083049
-
Shared catalysis in virus entry and bacterial cell wall depolymerization
-
Cohen DN, Sham YY, Haugstad GD, Xiang Y, Rossmann MG, Anderson DL, Popham DL (2009) Shared catalysis in virus entry and bacterial cell wall depolymerization. J Mol Biol 387(3):607-618
-
(2009)
J Mol Biol
, vol.387
, Issue.3
, pp. 607-618
-
-
Cohen, D.N.1
Sham, Y.Y.2
Haugstad, G.D.3
Xiang, Y.4
Rossmann, M.G.5
Anderson, D.L.6
Popham, D.L.7
-
20
-
-
77749279748
-
Three-dimensional structure of tropism-switching Bordetella bacteriophage
-
Dai W, Hodes A, Hui WH, Gingery M, Miller JF, Zhou ZH (2010) Three-dimensional structure of tropism-switching Bordetella bacteriophage. Proc Natl Acad Sci USA 107(9):4347-4352
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.9
, pp. 4347-4352
-
-
Dai, W.1
Hodes, A.2
Hui, W.H.3
Gingery, M.4
Miller, J.F.5
Zh, Z.6
-
21
-
-
79956307345
-
Structure and assembly of the essential RNA ring component of a viral DNA packaging motor
-
Ding F, Lu C, Zhao W, Rajashankar KR, Anderson DL, Jardine PJ, Grimes S, Ke A (2011) Structure and assembly of the essential RNA ring component of a viral DNA packaging motor. Proc Natl Acad Sci USA 108:7357-7362
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7357-7362
-
-
Ding, F.1
Lu, C.2
Zhao, W.3
Rajashankar, K.R.4
Anderson, D.L.5
Jardine, P.J.6
Grimes, S.7
Ke, A.8
-
22
-
-
34247368838
-
An ATP Hydrolysis Sensor in the DNA Packaging Motor from Bacteriophage T4 Suggests an Inchworm-Type Translocation Mechanism
-
DOI 10.1016/j.jmb.2007.03.019, PII S0022283607003439
-
Draper B, Rao VB (2007) An ATP hydrolysis sensor in the DNA packaging motor from bacteriophage T4 suggests an inchworm-type translocation mechanism. J Mol Biol 369(1):79-94 (Pubitemid 46635439)
-
(2007)
Journal of Molecular Biology
, vol.369
, Issue.1
, pp. 79-94
-
-
Draper, B.1
Rao, V.B.2
-
23
-
-
0018932980
-
DNA packaging by the double-stranded DNA bacteriophages
-
Earnshaw WC, Casjens SR (1980) DNA packaging by the double-stranded DNA bacteriophages. Cell 21(2):319-331 (Pubitemid 10047085)
-
(1980)
Cell
, vol.21
, Issue.2
, pp. 319-331
-
-
Earnshaw, W.C.1
Casjens, S.R.2
-
24
-
-
18844400837
-
Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry
-
DOI 10.1073/pnas.0502164102
-
Fokine A, Leiman PG, Shneider MM, Ahvazi B, Boeshans KM, Steven AC, Black LW, Mesyanzhinov VV, Rossmann MG (2005) Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. Proc Natl Acad Sci USA 102(20):7163-7168 (Pubitemid 40696351)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.20
, pp. 7163-7168
-
-
Fokine, A.1
Leiman, P.G.2
Shneider, M.M.3
Ahvazi, B.4
Boeshans, K.M.5
Steven, A.C.6
Black, L.W.7
Mesyanzhinov, V.V.8
Rossmann, M.G.9
-
25
-
-
0036426428
-
Three-dimensional imaging of biological complexity
-
DOI 10.1016/S1047-8477(02)00019-9, PII S1047847702000199
-
Frank J, Wagenknecht T, McEwen BF, Marko M, Hsieh CE, Mannella CA (2002) Three-dimensional imaging of biological complexity. J Struct Biol 138(1-2):85-91 (Pubitemid 35300750)
-
(2002)
Journal of Structural Biology
, vol.138
, Issue.1-2
, pp. 85-91
-
-
Frank, J.1
Wagenknecht, T.2
McEwen, B.F.3
Marko, M.4
Hsieh, C.-E.5
Mannella, C.A.6
-
26
-
-
70350128857
-
In vitro incorporation of the phage Phi29 connector complex
-
Fu CY, Prevelige PE Jr (2009) In vitro incorporation of the phage Phi29 connector complex. Virology 394(1):149-153
-
(2009)
Virology
, vol.394
, Issue.1
, pp. 149-153
-
-
Fu, C.Y.1
Prevelige Jr., P.E.2
-
27
-
-
34547430442
-
Ionic effects on viral DNA packaging and portal motor function in bacteriophage φ29
-
DOI 10.1073/pnas.0701323104
-
Fuller DN, Rickgauer JP, Jardine PJ, Grimes S, Anderson DL, Smith DE (2007) Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29. Proc Natl Acad Sci USA 104(27):11245-11250 (Pubitemid 47175126)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.27
, pp. 11245-11250
-
-
Fuller, D.N.1
Rickgauer, J.P.2
Jardine, P.J.3
Grimes, S.4
Anderson, D.L.5
Smith, D.E.6
-
28
-
-
0030817119
-
Boundary of pRNA functional domains and minimum pRNA sequence requirement for specifi c connector binding and DNA packaging of phage phi29
-
Garver K, Guo P (1997) Boundary of pRNA functional domains and minimum pRNA sequence requirement for specifi c connector binding and DNA packaging of phage phi29. RNA 3(9):1068-1079
-
(1997)
RNA
, vol.3
, Issue.9
, pp. 1068-1079
-
-
Garver, K.1
Guo, P.2
-
29
-
-
0035449570
-
A common mechanism for ATP hydrolysis in ABC transporter and helicase superfamilies
-
DOI 10.1016/S0968-0004(01)01907-7, PII S0968000401019077
-
Geourjon C, Orelle C, Steinfels E, Blanchet C, Deleage G, Di Pietro A, Jault JM (2001) A common mechanism for ATP hydrolysis in ABC transporter and helicase superfamilies. Trends Biochem Sci 26(9):539-544 (Pubitemid 32823438)
-
(2001)
Trends in Biochemical Sciences
, vol.26
, Issue.9
, pp. 539-544
-
-
Geourjon, C.1
Orelle, C.2
Steinfels, E.3
Blanchet, C.4
Deleage, G.5
Di Pietro, A.6
Jault, J.-M.7
-
30
-
-
0024428084
-
In vitro packaging of bacteriophage Φ29 DNA restriction fragments and the role of the terminal protein gp3
-
DOI 10.1016/0022-2836(89)90172-1
-
Grimes S, Anderson D (1989) In vitro packaging of bacteriophage phi 29 DNA restriction fragments and the role of the terminal protein gp3. J Mol Biol 209(1):91-100 (Pubitemid 19237809)
-
(1989)
Journal of Molecular Biology
, vol.209
, Issue.1
, pp. 91-100
-
-
Grimes, S.1
Anderson, D.2
-
31
-
-
0025028872
-
RNA dependence of the bacteriophage Φ29 DNA packaging ATPase
-
Grimes S, Anderson D (1990) RNA dependence of the bacteriophage phi 29 DNA packaging ATPase. J Mol Biol 215(4):559-566 (Pubitemid 20361392)
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.4
, pp. 559-566
-
-
Grimes, S.1
Anderson, D.2
-
33
-
-
0036301072
-
Detailed architecture of a DNA translocating machine: The high-resolution structure of the bacteriophage φ29 connector particle
-
DOI 10.1006/jmbi.2001.5278
-
Guasch A, Pous J, Ibarra B, Gomis-Ruth FX, Valpuesta JM, Sousa N, Carrascosa JL, Coll M (2002) Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle. J Mol Biol 315(4):663-676 (Pubitemid 34729317)
-
(2002)
Journal of Molecular Biology
, vol.315
, Issue.4
, pp. 663-676
-
-
Guasch, A.1
Pous, J.2
Ibarra, B.3
Gomis-Ruth, F.X.4
Valpuesta, J.M.5
Sousa, N.6
Carrascosa, J.L.7
Coll, M.8
-
35
-
-
0023660929
-
Initiation events in in-vitro packaging of bacteriophage phi 29 DNA-gp3
-
Guo P, Peterson C, Anderson D (1987a) Initiation events in in-vitro packaging of bacteriophage phi 29 DNA-gp3. J Mol Biol 197(2):219-228
-
(1987)
J Mol Biol
, vol.197
, Issue.2
, pp. 219-228
-
-
Guo, P.1
Peterson, C.2
Anderson, D.3
-
36
-
-
0023660940
-
Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29
-
Guo P, Peterson C, Anderson D (1987b) Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29. J Mol Biol 197(2):229-236
-
(1987)
J Mol Biol
, vol.197
, Issue.2
, pp. 229-236
-
-
Guo, P.1
Peterson, C.2
Anderson, D.3
-
37
-
-
0025923286
-
Regulation of the phage phi 29 prohead shape and size by the portal vertex
-
Guo PX, Erickson S, Xu W, Olson N, Baker TS, Anderson D (1991a) Regulation of the phage phi 29 prohead shape and size by the portal vertex. Virology 183(1):366-373
-
(1991)
Virology
, vol.183
, Issue.1
, pp. 366-373
-
-
Guo, P.X.1
Erickson, S.2
Xu, W.3
Olson, N.4
Baker, T.S.5
Anderson, D.6
-
38
-
-
0025925179
-
SRNA of phage phi 29 of Bacillus subtilis mediates DNA packaging of phi 29 proheads assembled in Escherichia coli
-
Guo PX, Rajagopal BS, Anderson D, Erickson S, Lee CS (1991b) sRNA of phage phi 29 of Bacillus subtilis mediates DNA packaging of phi 29 proheads assembled in Escherichia coli. Virology 185(1):395-400
-
(1991)
Virology
, vol.185
, Issue.1
, pp. 395-400
-
-
Guo, P.X.1
Rajagopal, B.S.2
Anderson, D.3
Erickson, S.4
Lee, C.S.5
-
39
-
-
0032110708
-
Inter-RNA interaction of phage θ29 pRNA to form a hexameric complex for viral DNA transportation
-
Guo P, Zhang C, Chen C, Garver K, Trottier M (1998) Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation. Mol Cell 2(1):149-155 (Pubitemid 128378977)
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 149-155
-
-
Guo, P.1
Zhang, C.2
Chen, C.3
Garver, K.4
Trottier, M.5
-
40
-
-
0017079544
-
Analysis of gene function of bacteriophage phi 29 of Bacillus subtilis: Identifi cation of cistrons essential for viral assembly
-
Hagen EW, Reilly BE, Tosi ME, Anderson DL (1976) Analysis of gene function of bacteriophage phi 29 of Bacillus subtilis : identifi cation of cistrons essential for viral assembly. J Virol 19(2):501-517
-
(1976)
J Virol
, vol.19
, Issue.2
, pp. 501-517
-
-
Hagen, E.W.1
Reilly, B.E.2
Tosi, M.E.3
Anderson, D.L.4
-
41
-
-
0017844502
-
Identification of the firmly bound to the ends of bacteriophage phi 29 DNA
-
Harding NE, Ito J, David GS (1978) Identifi cation of the protein fi rmly bound to the ends of bacteriophage phi 29 DNA. Virology 84(2):279-292 (Pubitemid 8286073)
-
(1978)
Virology
, vol.84
, Issue.2
, pp. 279-292
-
-
Harding, N.E.1
Ito, J.2
David, G.S.3
-
42
-
-
77954821676
-
Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin
-
Harris S, Schroeder SJ (2010) Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin. Biochemistry 49(29):5989-5997
-
(2010)
Biochemistry
, vol.49
, Issue.29
, pp. 5989-5997
-
-
Harris, S.1
Schroeder, S.J.2
-
44
-
-
0036597231
-
Bacteriophages: Evolution of the majority
-
DOI 10.1006/tpbi.2002.1590
-
Hendrix RW (2002) Bacteriophages: evolution of the majority. Theor Popul Biol 61(4):471-480 (Pubitemid 38051050)
-
(2002)
Theoretical Population Biology
, vol.61
, Issue.4
, pp. 471-480
-
-
Hendrix, R.W.1
-
45
-
-
33947213307
-
Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids
-
Hugel T, Michaelis J, Hetherington CL, Jardine PJ, Grimes S, Walter JM, Falk W, Anderson DL, Bustamante C (2007) Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids. PLoS Biol 5(3):e59
-
(2007)
PLoS Biol
, vol.5
, Issue.3
-
-
Hugel, T.1
Michaelis, J.2
Hetherington, C.L.3
Jardine, P.J.4
Grimes, S.5
Walter, J.M.6
Falk, W.7
Anderson, D.L.8
Bustamante, C.9
-
46
-
-
0032542358
-
Crystal structure of the ATP-binding subunit of an ABC transporter
-
DOI 10.1038/25393
-
Hung LW, Wang IX, Nikaido K, Liu PQ, Ames GF, Kim SH (1998) Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 396(6712):703-707 (Pubitemid 29003952)
-
(1998)
Nature
, vol.396
, Issue.6712
, pp. 703-707
-
-
Hung, L.-W.1
Wang, I.X.2
Nikaido, K.3
Liu, P.-Q.4
Ames, G.F.-L.5
Kim, S.-H.6
-
47
-
-
1642325936
-
Evolutionary history and higher order classification of AAA+ ATPases
-
DOI 10.1016/j.jsb.2003.10.010, PII S1047847703002235
-
Iyer LM, Leipe DD, Koonin EV, Aravind L (2004a) Evolutionary history and higher order classifi cation of AAA + ATPases. J Struct Biol 146(1-2):11-31 (Pubitemid 38369015)
-
(2004)
Journal of Structural Biology
, vol.146
, Issue.1-2
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
48
-
-
5144223072
-
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: Implications for the origins of chromosome segregation, cell division and viral capsid packaging
-
DOI 10.1093/nar/gkh828
-
Iyer LM, Makarova KS, Koonin EV, Aravind L (2004b) Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging. Nucleic Acids Res 32(17):5260-5279 (Pubitemid 39445514)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.17
, pp. 5260-5279
-
-
Iyer, L.M.1
Makarova, K.S.2
Koonin, E.V.3
Aravind, L.4
-
49
-
-
0037313264
-
Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions
-
DOI 10.1038/nsb891
-
Jiang W, Li Z, Zhang Z, Baker ML, Prevelige PE Jr, Chiu W (2003) Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nat Struct Biol 10(2):131-135 (Pubitemid 36177094)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.2
, pp. 131-135
-
-
Jiang, W.1
Li, Z.2
Zhang, Z.3
Baker, M.L.4
Prevelige Jr., P.E.5
Chiu, W.6
-
50
-
-
39849102970
-
Backbone structure of the infectious ε15 virus capsid revealed by electron cryomicroscopy
-
DOI 10.1038/nature06665, PII NATURE06665
-
Jiang W, Baker ML, Jakana J, Weigele PR, King J, Chiu W (2008) Backbone structure of the infectious epsilon 15 virus capsid revealed by electron cryomicroscopy. Nature 451(7182):1130-1134 (Pubitemid 351317451)
-
(2008)
Nature
, vol.451
, Issue.7182
, pp. 1130-1134
-
-
Jiang, W.1
Baker, M.L.2
Jakana, J.3
Weigele, P.R.4
King, J.5
Chiu, W.6
-
51
-
-
33751086144
-
1 ATPase
-
DOI 10.1038/sj.emboj.7601410, PII 7601410
-
Kabaleeswaran V, Puri N, Walker JE, Leslie AG, Mueller DM (2006) Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase. EMBO J 25(22):5433-5442 (Pubitemid 44764152)
-
(2006)
EMBO Journal
, vol.25
, Issue.22
, pp. 5433-5442
-
-
Kabaleeswaran, V.1
Puri, N.2
Walker, J.E.3
Leslie, A.G.W.4
Mueller, D.M.5
-
52
-
-
41249097479
-
Structural basis of mechanochemical coupling in a hexameric molecular motor
-
Kainov DE, Mancini EJ, Telenius J, Lisal J, Grimes JM, Bamford DH, Stuart DI, Tuma R (2008) Structural basis of mechanochemical coupling in a hexameric molecular motor. J Biol Chem 283(6):3607-3617
-
(2008)
J Biol Chem
, vol.283
, Issue.6
, pp. 3607-3617
-
-
Kainov, D.E.1
Mancini, E.J.2
Telenius, J.3
Lisal, J.4
Grimes, J.M.5
Bamford, D.H.6
Stuart, D.I.7
Tuma, R.8
-
53
-
-
33645303495
-
The phi29 DNA polymerase: Protein-primer structure suggests a model for the initiation to elongation transition
-
Kamtekar S, Berman AJ, Wang J, Lazaro JM, de Vega M, Blanco L, Salas M, Steitz TA (2006) The phi29 DNA polymerase: protein-primer structure suggests a model for the initiation to elongation transition. EMBO J 25(6): 1335-1343
-
(2006)
EMBO J
, vol.25
, Issue.6
, pp. 1335-1343
-
-
Kamtekar, S.1
Berman, A.J.2
Wang, J.3
Lazaro, J.M.4
De Vega, M.5
Blanco, L.6
Salas, M.7
Steitz, T.A.8
-
54
-
-
0013666301
-
Electron microscopical studies of phage multiplication. IV. The establishment of the DNA pool of vegetative phage and the maturation of phage particles
-
Kellenberger E, Sechaud J, Ryter A (1959) Electron microscopical studies of phage multiplication. IV. The establishment of the DNA pool of vegetative phage and the maturation of phage particles. Virology 8:478-498
-
(1959)
Virology
, vol.8
, pp. 478-498
-
-
Kellenberger, E.1
Sechaud, J.2
Ryter, A.3
-
55
-
-
48749126443
-
DNA packaging motor assembly intermediate of bacteriophage phi29
-
Koti JS, Morais MC, Rajagopal R, Owen BA, McMurray CT, Anderson DL (2008) DNA packaging motor assembly intermediate of bacteriophage phi29. J Mol Biol 381(5):1114-1132
-
(2008)
J Mol Biol
, vol.381
, Issue.5
, pp. 1114-1132
-
-
Koti, J.S.1
Morais, M.C.2
Rajagopal, R.3
Owen, B.A.4
McMurray, C.T.5
Anderson, D.L.6
-
56
-
-
66349109579
-
The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit
-
Lander GC, Khayat R, Li R, Prevelige PE, Potter CS, Carragher B, Johnson JE (2009) The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit. Structure 17(6):789-799
-
(2009)
Structure
, vol.17
, Issue.6
, pp. 789-799
-
-
Lander, G.C.1
Khayat, R.2
Li, R.3
Prevelige, P.E.4
Potter, C.S.5
Carragher, B.6
Johnson, J.E.7
-
57
-
-
34247268349
-
Structural framework for DNA translocation via the viral portal protein
-
DOI 10.1038/sj.emboj.7601643, PII 7601643
-
Lebedev AA, Krause MH, Isidro AL, Vagin AA, Orlova EV, Turner J, Dodson EJ, Tavares P, Antson AA (2007) Structural framework for DNA translocation via the viral portal protein. EMBO J 26(7):1984-1994 (Pubitemid 46624054)
-
(2007)
EMBO Journal
, vol.26
, Issue.7
, pp. 1984-1994
-
-
Lebedev, A.A.1
Krause, M.H.2
Isidro, A.L.3
Vagin, A.A.4
Orlova, E.V.5
Turner, J.6
Dodson, E.J.7
Tavares, P.8
Antson, A.A.9
-
58
-
-
31344436408
-
Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29
-
DOI 10.1016/j.jmb.2005.10.045, PII S0022283605012891
-
Lee TJ, Guo P (2006) Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29. J Mol Biol 356(3):589-599 (Pubitemid 43139322)
-
(2006)
Journal of Molecular Biology
, vol.356
, Issue.3
, pp. 589-599
-
-
Lee, T.-J.1
Guo, P.2
-
59
-
-
33845657428
-
UvrD Helicase Unwinds DNA One Base Pair at a Time by a Two-Part Power Stroke
-
DOI 10.1016/j.cell.2006.10.049, PII S0092867406016011
-
Lee JY, Yang W (2006) UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell 127(7): 1349-1360 (Pubitemid 44960421)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1349-1360
-
-
Lee, J.Y.1
Yang, W.2
-
60
-
-
0036295212
-
Classification and evolution of P-loop GTPases and related ATPases
-
DOI 10.1006/jmbi.2001.5378
-
Leipe DD, Wolf YI, Koonin EV, Aravind L (2002) Classifi cation and evolution of P-loop GTPases and related ATPases. J Mol Biol 317(1):41-72 (Pubitemid 34722199)
-
(2002)
Journal of Molecular Biology
, vol.317
, Issue.1
, pp. 41-72
-
-
Leipe, D.D.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
61
-
-
34347236451
-
Visualizing flexibility at molecular resolution: Analysis of heterogeneity in single-particle electron microscopy reconstructions
-
DOI 10.1146/annurev.biophys.36.040306.132742
-
Leschziner AE, Nogales E (2007) Visualizing fl exibility at molecular resolution: analysis of heterogeneity in singleparticle electron microscopy reconstructions. Annu Rev Biophys Biomol Struct 36:43-62 (Pubitemid 46998109)
-
(2007)
Annual Review of Biophysics and Biomolecular Structure
, vol.36
, pp. 43-62
-
-
Leschziner, A.E.1
Nogales, E.2
-
62
-
-
20744434561
-
Cooperative mechanism of RNA packaging motor
-
DOI 10.1074/jbc.M502658200
-
Lisal J, Tuma R (2005) Cooperative mechanism of RNA packaging motor. J Biol Chem 280(24):23157-23164 (Pubitemid 40853227)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.24
, pp. 23157-23164
-
-
Lisal, J.1
Tuma, R.2
-
63
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
DOI 10.1006/jsbi.1999.4174
-
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128(1):82-97 (Pubitemid 30013436)
-
(1999)
Journal of Structural Biology
, vol.128
, Issue.1
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
64
-
-
4544386863
-
Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation
-
DOI 10.1016/j.cell.2004.09.007, PII S0092867404008372
-
Mancini EJ, Kainov DE, Grimes JM, Tuma R, Bamford DH, Stuart DI (2004) Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation. Cell 118(6):743-755 (Pubitemid 39221733)
-
(2004)
Cell
, vol.118
, Issue.6
, pp. 743-755
-
-
Mancini, E.J.1
Kainov, D.E.2
Grimes, J.M.3
Tuma, R.4
Bamford, D.H.5
Stuart, D.I.6
-
65
-
-
0037106323
-
Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases
-
Mitchell MS, Matsuzaki S, Imai S, Rao VB (2002) Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases. Nucleic Acids Res 30(18): 4009-4021
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.18
, pp. 4009-4021
-
-
Mitchell, M.S.1
Matsuzaki, S.2
Imai, S.3
Rao, V.B.4
-
66
-
-
58749087869
-
Intersubunit coordination in a homomeric ring ATPase
-
Moffi tt JR, Chemla YR, Aathavan K, Grimes S, Jardine PJ, Anderson DL, Bustamante C (2009) Intersubunit coordination in a homomeric ring ATPase. Nature 457(7228):446-450
-
(2009)
Nature
, vol.457
, Issue.7228
, pp. 446-450
-
-
Moffitt, J.R.1
Chemla, Y.R.2
Aathavan, K.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
67
-
-
0034142309
-
Crystallization and preliminary crystallographic analysis of phosphonoacetaldehyde hydrolase
-
DOI 10.1107/S0907444999015899
-
Morais MC, Baker AS, Dunaway-Mariano D, Allen KN (2000) Crystallization and preliminary crystallographic analysis of phosphonoacetaldehyde hydrolase. Acta Crystallogr D Biol Crystallogr 56(Pt 2):206-209 (Pubitemid 30105020)
-
(2000)
Acta Crystallographica Section D: Biological Crystallography
, vol.56
, Issue.2
, pp. 206-209
-
-
Morais, M.C.1
Baker, A.S.2
Dunaway-Mariano, D.3
Allen, K.N.4
-
68
-
-
0035783057
-
Cryoelectronmicroscopy image reconstruction of symmetry mismatches in bacteriophage phi29
-
Morais MC, Tao Y, Olson NH, Grimes S, Jardine PJ, Anderson DL, Baker TS, Rossmann MG (2001) Cryoelectronmicroscopy image reconstruction of symmetry mismatches in bacteriophage phi29. J Struct Biol 135(1):38-46
-
(2001)
J Struct Biol
, vol.135
, Issue.1
, pp. 38-46
-
-
Morais, M.C.1
Tao, Y.2
Olson, N.H.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Baker, T.S.7
Rossmann, M.G.8
-
69
-
-
0038419606
-
Bacteriophage φ29 scaffolding protein gp7 before and after prohead assembly
-
DOI 10.1038/nsb939
-
Morais MC, Kanamaru S, Badasso MO, Koti JS, Owen BA, McMurray CT, Anderson DL, Rossmann MG (2003) Bacteriophage phi29 scaffolding protein gp7 before and after prohead assembly. Nat Struct Biol 10(7):572-576 (Pubitemid 36792910)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.7
, pp. 572-576
-
-
Morais, M.C.1
Kanamarul, S.2
Badasso, M.O.3
Koti, J.S.4
Owen, B.A.L.5
McMurray, C.T.6
Anderson, D.L.7
Rossmann, M.G.8
-
70
-
-
17044395121
-
Conservation of the capsid structure in tailed dsDNA bacteriophages: The pseudoatomic structure of phi29
-
Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG (2005) Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29. Mol Cell 18(2):149-159
-
(2005)
Mol Cell
, vol.18
, Issue.2
, pp. 149-159
-
-
Morais, M.C.1
Choi, K.H.2
Koti, J.S.3
Chipman, P.R.4
Anderson, D.L.5
Rossmann, M.G.6
-
71
-
-
48149087104
-
Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor
-
Morais MC, Koti JS, Bowman VD, Reyes-Aldrete E, Anderson DL, Rossmann MG (2008) Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor. Structure 16(8):1267-1274
-
(2008)
Structure
, vol.16
, Issue.8
, pp. 1267-1274
-
-
Morais, M.C.1
Koti, J.S.2
Bowman, V.D.3
Reyes-Aldrete, E.4
Anderson, D.L.5
Rossmann, M.G.6
-
72
-
-
84858179369
-
Complementary Strands of Bacteriophage phi29 Deoxyribonucleic Acid: Preparative Separation and Transcription Studies
-
Mosharrafa ET, Schachtele CF, Reilly BE, Anderson DL (1970) Complementary Strands of Bacteriophage phi29 Deoxyribonucleic Acid: Preparative Separation and Transcription Studies. J Virol 6(6):855-864
-
(1970)
J Virol
, vol.6
, Issue.6
, pp. 855-864
-
-
Mosharrafa, E.T.1
Schachtele, C.F.2
Reilly, B.E.3
Anderson, D.L.4
-
73
-
-
0343811707
-
The bacteriophage φ29 head-tail connector imaged at high resolution with the atomic force microscope in buffer solution
-
DOI 10.1093/emboj/16.10.2547
-
Muller DJ, Engel A, Carrascosa JL, Velez M (1997) The bacteriophage phi29 head-tail connector imaged at high resolution with the atomic force microscope in buffer solution. EMBO J 16(10):2547-2553 (Pubitemid 27226194)
-
(1997)
EMBO Journal
, vol.16
, Issue.10
, pp. 2547-2553
-
-
Muller, D.J.1
Engel, A.2
Carrascosa, J.L.3
Velez, M.4
-
74
-
-
0033598667
-
1-ATPase residue α-Arg-376 for catalytic transition state stabilization
-
Nadanaciva S, Weber J, Wilke-Mounts S, Senior AE (1999) Importance of F1-ATPase residue alpha-Arg-376 for catalytic transition state stabilization. Biochemistry 38(47):15493-15499 (Pubitemid 129503589)
-
(1999)
Biochemistry
, vol.38
, Issue.47
, pp. 15493-15499
-
-
Nadanaciva, S.1
Weber, J.2
Wilke-Mounts, S.3
Senior, A.E.4
-
75
-
-
1642377971
-
+ ATPases
-
DOI 10.1016/j.jsb.2003.11.008, PII S1047847703002843
-
Ogura T, Whiteheart SW, Wilkinson AJ (2004) Conserved arginine residues implicated in ATP hydrolysis, nucleotidesensing, and inter-subunit interactions in AAA and AAA + ATPases. J Struct Biol 146(1-2):106-112 (Pubitemid 38369023)
-
(2004)
Journal of Structural Biology
, vol.146
, Issue.1-2
, pp. 106-112
-
-
Ogura, T.1
Whiteheart, S.W.2
Wilkinson, A.J.3
-
76
-
-
0037451286
-
Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopy
-
DOI 10.1093/emboj/cdg123
-
Orlova EV, Gowen B, Droge A, Stiege A, Weise F, Lurz R, van Heel M, Tavares P (2003) Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopy. EMBO J 22(6):1255-1262 (Pubitemid 36362689)
-
(2003)
EMBO Journal
, vol.22
, Issue.6
, pp. 1255-1262
-
-
Orlova, E.V.1
Gowen, B.2
Droge, A.3
Stiege, A.4
Weise, F.5
Lurz, R.6
Van Heel, M.7
Tavares, P.8
-
77
-
-
47749092360
-
Packaging double-helical DNA into viral capsids: Structures, forces, and energetics
-
Petrov AS, Harvey SC (2008) Packaging double-helical DNA into viral capsids: structures, forces, and energetics. Biophys J 95(2):497-502
-
(2008)
Biophys J
, vol.95
, Issue.2
, pp. 497-502
-
-
Petrov, A.S.1
Harvey, S.C.2
-
78
-
-
0027992332
-
Characterization of the prohead-pRNA interaction of bacteriophage φ29
-
Reid RJ, Bodley JW, Anderson D (1994a) Characterization of the prohead-pRNA interaction of bacteriophage phi 29. J Biol Chem 269(7):5157-5162 (Pubitemid 24239507)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.7
, pp. 5157-5162
-
-
Reid, R.J.D.1
Bodley, J.W.2
Anderson, D.3
-
79
-
-
0028175938
-
Identifi cation of bacteriophage phi 29 prohead RNA domains necessary for in vitro DNA-gp3 packaging
-
Reid RJ, Bodley JW, Anderson D (1994b) Identifi cation of bacteriophage phi 29 prohead RNA domains necessary for in vitro DNA-gp3 packaging. J Biol Chem 269(12):9084-9089
-
(1994)
J Biol Chem
, vol.269
, Issue.12
, pp. 9084-9089
-
-
Reid, R.J.1
Bodley, J.W.2
Anderson, D.3
-
80
-
-
0028358819
-
Probing the structure of bacteriophage φ29 prohead RNA with specific mutations
-
Reid RJ, Zhang F, Benson S, Anderson D (1994c) Probing the structure of bacteriophage phi 29 prohead RNA with specifi c mutations. J Biol Chem 269(28):18656-18661 (Pubitemid 24224108)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.28
, pp. 18656-18661
-
-
Reid, R.J.D.1
Zhang, F.2
Benson, S.3
Anderson, D.4
-
81
-
-
37749051185
-
Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29
-
Rickgauer JP, Fuller DN, Grimes S, Jardine PJ, Anderson DL, Smith DE (2008) Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29. Biophys J 94(1):159-167
-
(2008)
Biophys J
, vol.94
, Issue.1
, pp. 159-167
-
-
Rickgauer, J.P.1
Fuller, D.N.2
Grimes, S.3
Jardine, P.J.4
Anderson, D.L.5
Smith, D.E.6
-
82
-
-
0016345760
-
Chemical and biological evolution of nucleotide-binding protein
-
Rossmann MG, Moras D, Olsen KW (1974) Chemical and biological evolution of nucleotide-binding protein. Nature 250(463):194-199
-
(1974)
Nature
, vol.250
, Issue.463
, pp. 194-199
-
-
Rossmann, M.G.1
Moras, D.2
Olsen, K.W.3
-
83
-
-
14844338484
-
Combining X-ray crystallography and electron microscopy
-
DOI 10.1016/j.str.2005.01.005
-
Rossmann MG, Morais MC, Leiman PG, Zhang W (2005) Combining X-ray crystallography and electron microscopy. Structure 13(3):355-362 (Pubitemid 40342874)
-
(2005)
Structure
, vol.13
, Issue.3
, pp. 355-362
-
-
Rossmann, M.G.1
Morais, M.C.2
Leiman, P.G.3
Zhang, W.4
-
84
-
-
0017893449
-
Characterization of a protein covalently linked to the 5' termini of the DNA of Bacillus subtilis phage phi29
-
Salas M, Mellado RP, Vinuela E (1978) Characterization of a protein covalently linked to the 5 ' termini of the DNA of Bacillus subtilis phage phi29. J Mol Biol 119(2):269-291 (Pubitemid 8279212)
-
(1978)
Journal of Molecular Biology
, vol.119
, Issue.2
, pp. 269-291
-
-
Salas, M.1
Mellado, R.P.2
Vinuela, E.3
-
85
-
-
0015549276
-
Transcription during the development of bacteriophage phi29: Defi - Nition of 'early' and 'late' phi29 ribonucleic acid
-
Schachtele CF, De Sain CV, Anderson DL (1973) Transcription during the development of bacteriophage phi29: defi - nition of 'early' and 'late' phi29 ribonucleic acid. J Virol 11(1):9-16
-
(1973)
J Virol
, vol.11
, Issue.1
, pp. 9-16
-
-
Schachtele, C.F.1
De Sain, C.V.2
Anderson, D.L.3
-
86
-
-
33846551354
-
Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system
-
DOI 10.1038/sj.emboj.7601506, PII 7601506
-
Shu D, Zhang H, Jin J, Guo P (2007) Counting of six pRNAs of phi29 DNA-packaging motor with customized singlemolecule dual-view system. EMBO J 26(2):527-537 (Pubitemid 46160952)
-
(2007)
EMBO Journal
, vol.26
, Issue.2
, pp. 527-537
-
-
Shu, D.1
Zhang, H.2
Jin, J.3
Guo, P.4
-
87
-
-
0034619668
-
Structure of the bacteriophage φ29 DNA packaging motor
-
DOI 10.1038/35047129
-
Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG (2000) Structure of the bacteriophage phi29 DNA packaging motor. Nature 408(6813): 745-750 (Pubitemid 32015993)
-
(2000)
Nature
, vol.408
, Issue.6813
, pp. 745-750
-
-
Simpson, A.A.1
Tao, Y.2
Leiman, P.G.3
Badasso, M.O.4
He, Y.5
Jardine, P.J.6
Olson, N.H.7
Morais, M.C.8
Grimes, S.9
Anderson, D.L.10
Baker, T.S.11
Rossmann, M.G.12
-
88
-
-
0034821069
-
Structure determination of the head-tail connector of bacteriophage φ29
-
DOI 10.1107/S0907444901010435
-
Simpson AA, Leiman PG, Tao Y, He Y, Badasso MO, Jardine PJ, Anderson DL, Rossmann MG (2001) Structure determination of the head-tail connector of bacteriophage phi29. Acta Crystallogr D Biol Crystallogr 57(Pt 9): 1260-1269 (Pubitemid 32885722)
-
(2001)
Acta Crystallographica Section D: Biological Crystallography
, vol.57
, Issue.9
, pp. 1260-1269
-
-
Simpson, A.A.1
Leiman, P.G.2
Tao, Y.3
He, Y.4
Badasso, M.O.5
Jardine, P.J.6
Anderson, D.L.7
Rossmann, M.G.8
-
89
-
-
0034625236
-
Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides
-
Singleton MR, Sawaya MR, Ellenberger T, Wigley DB (2000) Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides. Cell 101(6):589-600
-
(2000)
Cell
, vol.101
, Issue.6
, pp. 589-600
-
-
Singleton, M.R.1
Sawaya, M.R.2
Ellenberger, T.3
Wigley, D.B.4
-
90
-
-
34548638261
-
Structure and mechanism of helicases and nucleic acid translocases
-
Singleton MR, Dillingham MS, Wigley DB (2007) Structure and mechanism of helicases and nucleic acid translocases. Annu Rev Biochem 76:23-50
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 23-50
-
-
Singleton, M.R.1
Dillingham, M.S.2
Wigley, D.B.3
-
91
-
-
0037559627
-
Structure of the Rho transcription terminator: Mechanism of mRNA recognition and helicase loading
-
DOI 10.1016/S0092-8674(03)00512-9
-
Skordalakes E, Berger JM (2003) Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading. Cell 114(1):135-146 (Pubitemid 36869001)
-
(2003)
Cell
, vol.114
, Issue.1
, pp. 135-146
-
-
Skordalakes, E.1
Berger, J.M.2
-
92
-
-
0035909370
-
The bacteriophage φ29 portal motor can package DNA against a large internal force
-
DOI 10.1038/35099581
-
Smith DE, Tans SJ, Smith SB, Grimes S, Anderson DL, Bustamante C (2001) The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature 413(6857):748-752 (Pubitemid 33009954)
-
(2001)
Nature
, vol.413
, Issue.6857
, pp. 748-752
-
-
Smith, D.E.1
Tans, S.J.2
Smith, S.B.3
Grimes, S.4
Anderson, D.L.5
Bustamante, C.6
-
93
-
-
0026584599
-
Structure of the recA protein-ADP complex
-
Story RM, Steitz TA (1992) Structure of the recA protein-ADP complex. Nature 355(6358):374-376
-
(1992)
Nature
, vol.355
, Issue.6358
, pp. 374-376
-
-
Story, R.M.1
Steitz, T.A.2
-
94
-
-
0026500416
-
The structure of the E. coli recA protein monomer and polymer
-
Story RM, Weber IT, Steitz TA (1992) The structure of the E. coli recA protein monomer and polymer. Nature 355(6358):318-325
-
(1992)
Nature
, vol.355
, Issue.6358
, pp. 318-325
-
-
Story, R.M.1
Weber, I.T.2
Steitz, T.A.3
-
95
-
-
0029856618
-
Crystal structure of a DExx box DNA helicase
-
DOI 10.1038/384379a0
-
Subramanya HS, Bird LE, Brannigan JA, Wigley DB (1996) Crystal structure of a DExx box DNA helicase. Nature 384(6607):379-383 (Pubitemid 26408523)
-
(1996)
Nature
, vol.384
, Issue.6607
, pp. 379-383
-
-
Subramanya, H.S.1
Bird, L.E.2
Brannigan, J.A.3
Wigley, D.B.4
-
96
-
-
33947281384
-
The Structure of the ATPase that Powers DNA Packaging into Bacteriophage T4 Procapsids
-
DOI 10.1016/j.molcel.2007.02.013, PII S109727650700113X
-
Sun S, Kondabagil K, Gentz PM, Rossmann MG, Rao VB (2007) The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids. Mol Cell 25(6):943-949 (Pubitemid 46436529)
-
(2007)
Molecular Cell
, vol.25
, Issue.6
, pp. 943-949
-
-
Sun, S.1
Kondabagil, K.2
Gentz, P.M.3
Rossmann, M.G.4
Rao, V.B.5
-
97
-
-
57649228017
-
The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces
-
Sun S, Kondabagil K, Draper B, Alam TI, Bowman VD, Zhang Z, Hegde S, Fokine A, Rossmann MG, Rao VB (2008) The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell 135(7):1251-1262
-
(2008)
Cell
, vol.135
, Issue.7
, pp. 1251-1262
-
-
Sun, S.1
Kondabagil, K.2
Draper, B.3
Alam, T.I.4
Bowman, V.D.5
Zhang, Z.6
Hegde, S.7
Fokine, A.8
Rossmann, M.G.9
Rao, V.B.10
-
98
-
-
44649135211
-
DNA Poised for Release in Bacteriophage ø29
-
DOI 10.1016/j.str.2008.02.024, PII S0969212608001482
-
Tang J, Olson N, Jardine PJ, Grimes S, Anderson DL, Baker TS (2008) DNA poised for release in bacteriophage phi29. Structure 16(6):935-943 (Pubitemid 351778380)
-
(2008)
Structure
, vol.16
, Issue.6
, pp. 935-943
-
-
Tang, J.1
Olson, N.2
Jardine, P.J.3
Grimes, S.4
Anderson, D.L.5
Baker, T.S.6
-
99
-
-
0032582665
-
Assembly of a tailed bacterial virus and its genome release studied in three dimensions
-
DOI 10.1016/S0092-8674(00)81773-0
-
Tao Y, Olson NH, Xu W, Anderson DL, Rossmann MG, Baker TS (1998) Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell 95(3):431-437 (Pubitemid 28507330)
-
(1998)
Cell
, vol.95
, Issue.3
, pp. 431-437
-
-
Tao, Y.1
Olson, N.H.2
Xu, W.3
Anderson, D.L.4
Rossmann, M.G.5
Baker, T.S.6
-
100
-
-
49249093920
-
Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases
-
Thomsen ND, Berger JM (2008) Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases. Mol Microbiol 69(5):1071-1090
-
(2008)
Mol Microbiol
, vol.69
, Issue.5
, pp. 1071-1090
-
-
Thomsen, N.D.1
Berger, J.M.2
-
101
-
-
0031060162
-
Approaches to determine stoichiometry of viral assembly components
-
Trottier M, Guo P (1997) Approaches to determine stoichiometry of viral assembly components. J Virol 71(1): 487-494 (Pubitemid 26412317)
-
(1997)
Journal of Virology
, vol.71
, Issue.1
, pp. 487-494
-
-
Trottier, M.1
Guo, P.2
-
102
-
-
0028176714
-
The bacteriophage phi 29 head-tail connector shows 13-fold symmetry in both hexagonally packed arrays and as single particles
-
Tsuprun V, Anderson D, Egelman EH (1994) The bacteriophage phi 29 head-tail connector shows 13-fold symmetry in both hexagonally packed arrays and as single particles. Biophys J 66(6):2139-2150
-
(1994)
Biophys J
, vol.66
, Issue.6
, pp. 2139-2150
-
-
Tsuprun, V.1
Anderson, D.2
Egelman, E.H.3
-
103
-
-
0033591438
-
Domain architecture of the bacteriophage φ29 connector protein
-
DOI 10.1006/jmbi.1999.2731
-
Valle M, Kremer L, Martinez AC, Roncal F, Valpuesta JM, Albar JP, Carrascosa JL (1999) Domain architecture of the bacteriophage phi29 connector protein. J Mol Biol 288(5):899-909 (Pubitemid 29248641)
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.5
, pp. 899-909
-
-
Valle, M.1
Kremer, L.2
Martinez, A.C.3
Roncal, F.4
Valpuesta, J.M.5
Albar, J.P.6
Carrascosa, J.L.7
-
104
-
-
0028000731
-
Structure of viral connectors and their function in bacteriophage assembly and DNA packaging
-
Valpuesta JM, Carrascosa JL (1994) Structure of viral connectors and their function in bacteriophage assembly and DNA packaging. Q Rev Biophys 27(2):107-155 (Pubitemid 24246113)
-
(1994)
Quarterly Reviews of Biophysics
, vol.27
, Issue.2
, pp. 107-155
-
-
Valpuesta, J.M.1
Carrascosa, J.L.2
-
105
-
-
0039786701
-
The three-dimensional structure of a DNA translocating machine at 10 A resolution
-
DOI 10.1016/S0969-2126(99)80039-2
-
Valpuesta JM, Fernandez JJ, Carazo JM, Carrascosa JL (1999) The three-dimensional structure of a DNA translocating machine at 10 A resolution. Structure 7(3):289-296 (Pubitemid 29159688)
-
(1999)
Structure
, vol.7
, Issue.3
, pp. 289-296
-
-
Valpuesta, J.M.1
Fernandez, J.J.2
Carazo, J.M.3
Carrascosa, J.L.4
-
106
-
-
20244379996
-
Single-particle electron cryo-microscopy: Towards atomic resolution
-
DOI 10.1017/S0033583500003644
-
van Heel M, Gowen B, Matadeen R, Orlova EV, Finn R, Pape T, Cohen D, Stark H, Schmidt R, Schatz M, Patwardhan A (2000) Single-particle electron cryo-microscopy: towards atomic resolution. Q Rev Biophys 33(4):307-369 (Pubitemid 32151706)
-
(2000)
Quarterly Reviews of Biophysics
, vol.33
, Issue.4
, pp. 307-369
-
-
Van Heel, M.1
Gowen, B.2
Matadeen, R.3
Orlova, E.V.4
Finn, R.5
Pape, T.6
Cohen, D.7
Stark, H.8
Schmidt, R.9
Schatz, M.10
Patwardhan, A.11
-
107
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar SS, Soultanas P, Dillingham MS, Subramanya HS, Wigley DB (1999) Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97(1):75-84 (Pubitemid 29165891)
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
108
-
-
0001607723
-
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker JE, Saraste M, Runswick MJ, Gay NJ (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1(8):945-951
-
(1982)
EMBO J
, vol.1
, Issue.8
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
-
109
-
-
0024967168
-
Prohead RNA of bacteriophage phi 29: Size, stoichiometry and biological activity
-
Wichitwechkarn J, Bailey S, Bodley JW, Anderson D (1989) Prohead RNA of bacteriophage phi 29: size, stoichiometry and biological activity. Nucleic Acids Res 17(9):3459-3468
-
(1989)
Nucleic Acids Res
, vol.17
, Issue.9
, pp. 3459-3468
-
-
Wichitwechkarn, J.1
Bailey, S.2
Bodley, J.W.3
Anderson, D.4
-
110
-
-
0034703226
-
Topologically linked protein rings in the bacteriophage HK97 capsid
-
Wikoff WR, Liljas L, Duda RL, Tsuruta H, Hendrix RW, Johnson JE (2000) Topologically linked protein rings in the bacteriophage HK97 capsid. Science 289(5487):2129-2133
-
(2000)
Science
, vol.289
, Issue.5487
, pp. 2129-2133
-
-
Wikoff, W.R.1
Liljas, L.2
Duda, R.L.3
Tsuruta, H.4
Hendrix, R.W.5
Johnson, J.E.6
-
111
-
-
0030738592
-
The interaction of Ras with GTPase-activating proteins
-
DOI 10.1016/S0014-5793(97)00321-9, PII S0014579397003219
-
Wittinghofer A, Scheffzek K, Ahmadian MR (1997) The interaction of Ras with GTPase-activating proteins. FEBS Lett 410(1):63-67 (Pubitemid 27283385)
-
(1997)
FEBS Letters
, vol.410
, Issue.1
, pp. 63-67
-
-
Wittinghofer, A.1
Scheffzek, K.2
Ahmadian, M.R.3
-
112
-
-
33750450852
-
Structural changes of bacteriophage φ29 upon DNA packaging and release
-
DOI 10.1038/sj.emboj.7601386, PII 7601386
-
Xiang Y, Morais MC, Battisti AJ, Grimes S, Jardine PJ, Anderson DL, Rossmann MG (2006) Structural changes of bacteriophage phi29 upon DNA packaging and release. EMBO J 25(21):5229-5239 (Pubitemid 44658539)
-
(2006)
EMBO Journal
, vol.25
, Issue.21
, pp. 5229-5239
-
-
Xiang, Y.1
Morais, M.C.2
Battisti, A.J.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Rossmann, M.G.7
-
113
-
-
47749144031
-
Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage φ29 tail
-
DOI 10.1073/pnas.0803787105
-
Xiang Y, Morais MC, Cohen DN, Bowman VD, Anderson DL, Rossmann MG (2008) Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail. Proc Natl Acad Sci USA 105(28): 9552-9557 (Pubitemid 352031339)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.28
, pp. 9552-9557
-
-
Xiang, Y.1
Morais, M.C.2
Cohen, D.N.3
Bowman, V.D.4
Anderson, D.L.5
Rossmann, M.G.6
-
114
-
-
19444373849
-
Binding of pRNA to the N-terminal 14 amino acids of connector protein of bacteriophage phi29
-
DOI 10.1093/nar/gki554
-
Xiao F, Moll WD, Guo S, Guo P (2005) Binding of pRNA to the N-terminal 14 amino acids of connector protein of bacteriophage phi29. Nucleic Acids Res 33(8):2640-2649 (Pubitemid 41511283)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.8
, pp. 2640-2649
-
-
Xiao, F.1
Moll, W.-D.2
Guo, S.3
Guo, P.4
-
115
-
-
0018089244
-
Genome-linked protein associated with the 5' termini of bacteriophage Φ29 DNA
-
Yehle CO (1978) Genome-linked protein associated with the 5 ' termini of bacteriophage phi29 DNA. J Virol 27(3):776-783 (Pubitemid 9009118)
-
(1978)
Journal of Virology
, vol.27
, Issue.3
, pp. 776-783
-
-
Yehle, C.O.1
-
116
-
-
0028796334
-
A common topology of proteins catalyzing ATP-triggered reactions
-
Yoshida M, Amano T (1995) A common topology of proteins catalyzing ATP-triggered reactions. FEBS Lett 359(1):1-5
-
(1995)
FEBS Lett
, vol.359
, Issue.1
, pp. 1-5
-
-
Yoshida, M.1
Amano, T.2
-
117
-
-
77953811389
-
Mechanochemistry of a viral DNA packaging motor
-
Yu J, Moffi tt J, Hetherington CL, Bustamante C, Oster G (2010) Mechanochemistry of a viral DNA packaging motor. J Mol Biol 400(2):186-203
-
(2010)
J Mol Biol
, vol.400
, Issue.2
, pp. 186-203
-
-
Yu, J.1
Moffitt, J.2
Hetherington, C.L.3
Bustamante, C.4
Oster, G.5
-
118
-
-
0028361637
-
The proximate 5 ' and 3 ' ends of the 120-base viral RNA (pRNA) are crucial for the packaging of bacteriophage phi 29 DNA
-
Zhang C, Lee CS, Guo P (1994) The proximate 5 ' and 3 ' ends of the 120-base viral RNA (pRNA) are crucial for the packaging of bacteriophage phi 29 DNA. Virology 201(1):77-85
-
(1994)
Virology
, vol.201
, Issue.1
, pp. 77-85
-
-
Zhang, C.1
Lee, C.S.2
Guo, P.3
-
119
-
-
0029437961
-
Confi rmation of the helical structure of the 5 ' /3 ' termini of the essential DNA packaging pRNA of phage phi 29
-
Zhang C, Tellinghuisen T, Guo P (1995) Confi rmation of the helical structure of the 5 ' /3 ' termini of the essential DNA packaging pRNA of phage phi 29. RNA 1(10):1041-1050
-
(1995)
RNA
, vol.1
, Issue.10
, pp. 1041-1050
-
-
Zhang, C.1
Tellinghuisen, T.2
Guo, P.3
-
120
-
-
0032111970
-
Function of hexameric RNA in packaging of bacteriophage θ29 DNA in vitro
-
Zhang F, Lemieux S, Wu X, St-Arnaud D, McMurray CT, Major F, Anderson D (1998) Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro. Mol Cell 2(1):141-147 (Pubitemid 128378976)
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 141-147
-
-
Zhang, F.1
Lemieux, S.2
Wu, X.3
St.-Arnaud, D.4
McMurray, C.T.5
Major, F.6
Anderson, D.7
-
121
-
-
52949145603
-
Role of the CCA bulge of prohead RNA of bacteriophage '29 in DNA packaging
-
Zhao W, Morais MC, Anderson DL, Jardine PJ, Grimes S (2008) Role of the CCA bulge of prohead RNA of bacteriophage '29 in DNA packaging. J Mol Biol 383(3):520-528
-
(2008)
J Mol Biol
, vol.383
, Issue.3
, pp. 520-528
-
-
Zhao, W.1
Morais, M.C.2
Anderson, D.L.3
Jardine, P.J.4
Grimes, S.5
-
122
-
-
38949104355
-
A conformational switch in bacteriophage P22 portal protein primes genome injection
-
DOI 10.1016/j.molcel.2007.11.034, PII S1097276508000063
-
Zheng H, Olia AS, Gonen M, Andrews S, Cingolani G, Gonen T (2008) A conformational switch in bacteriophage p22 portal protein primes genome injection. Mol Cell 29(3):376-383 (Pubitemid 351215935)
-
(2008)
Molecular Cell
, vol.29
, Issue.3
, pp. 376-383
-
-
Zheng, H.1
Olia, A.S.2
Gonen, M.3
Andrews, S.4
Cingolani, G.5
Gonen, T.6
-
123
-
-
0034608018
-
Seeing the herpesvirus capsid at 8.5 A
-
Zhou ZH, Dougherty M, Jakana J, He J, Rixon FJ, Chiu W (2000) Seeing the herpesvirus capsid at 8.5 A. Science 288(5467):877-880
-
(2000)
Science
, vol.288
, Issue.5467
, pp. 877-880
-
-
Zh, Z.1
Dougherty, M.2
Jakana, J.3
He, J.4
Rixon, F.J.5
Chiu, W.6
|