Three-dimensional structure of tropism-switching Bordetella bacteriophage

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 9, 2010, Pages 4347-4352

  Dai, Wei ^a,b   Hodes, Asher ^c   Hui, Wong H ^a,c   Gingery, Mari ^c   Miller, Jeff F ^c   Zhou, Z Hong ^a,b,c  

^a UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Avidity; Bordetella phage; Cryo electron microscopy; Tropism determinant protein

Indexed keywords

CAPSID PROTEIN; HK97 PROTEIN; MAJOR TROPISM DETERMINANT PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; BACTERIOPHAGE; BACTERIOPHAGE BPP 1; BINDING AFFINITY; BORDETELLA; CELL SURFACE; CRYOELECTRON MICROSCOPY; ELECTRON TOMOGRAPHY; IMMUNOGOLD LABELING; LIGAND BINDING; MOLECULE; MUTAGENESIS; NONHUMAN; PLANT GROWTH; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN STABILITY; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING; TOMOGRAPHY; VIRUS MORPHOLOGY;

BACTERIOPHAGES; BORDETELLA; CRYOELECTRON MICROSCOPY; VIRAL TROPISM;

BORDETELLA; MIRIDAE;

EID: 77749279748     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0915008107     Document Type: Article

References (27)

1. Uhl MA, Miller JF (1996) Integration of multiple domains in a two-component sensor protein: The Bordetella pertussis BvgAS phosphorelay. EMBO J 15:1028-1036.
2. Liu M, et al. (2002) Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science 295:2091-2094.
3. McMahon SA, et al. (2005) The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat Struct Mol Biol 12:886-892.
4. Liu M, et al. (2004) Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. J Bacteriol 186: 1503-1517.
5. Doulatov S, et al. (2004) Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature 431:476-481.
6. Jiang W, et al. (2008) Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy. Nature 451:1130-1134.
7. Jiang W, et al. (2006) Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439:612-616.
8. Lander GC, et al. (2006) The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science 312:1791-1795.
9. Tao Y, et al. (1998) Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell 95:431-437.
10. Chang J, Weigele P, King J, Chiu W, Jiang W (2006) Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure 14:1073-1082.
11. WikoffWR, et al. (2000) Topologically linked protein rings in the bacteriophage HK97 capsid. Science 289:2129-2133.
12. Jiang W, et al. (2003) Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nat Struct Biol 10:131-135.
13. Baker ML, Jiang W, Rixon FJ, Chiu W (2005) Common ancestry of herpesviruses and tailed DNA bacteriophages. J Virol 79:14967-14970.
14. Tang L, Gilcrease EB, Casjens SR, Johnson JE (2006) Highly discriminatory binding of capsid-cementing proteins in bacteriophage L. Structure 14:837-845.
15. Chang C, Plückthun A, Wlodawer A (2004) Crystal structure of a truncated version of the phage lambda protein gpD. Proteins 57:866-868.
16. Fokine A, et al. (2004) Molecular architecture of the prolate head of bacteriophage T4. Proc Natl Acad Sci USA 101:6003-6008.
17. Ishii T, YanagidaM(1977) The two dispensable structural proteins (soc and hoc) of the T4 phage capsid; their purification and properties, isolation and characterization of the defective mutants, and their binding with the defective heads in vitro. J Mol Biol 109:487-514.
18. Iwasaki K, et al. (2000) Molecular architecture of bacteriophage T4 capsid: vertex structure and bimodal binding of the stabilizing accessory protein, Soc. Virology 271: 321-333.
19. Miller JL, et al. (2008) Selective ligand recognition by a diversity-generating retroelement variable protein. PLoS Biol 6:e131.
20. Jain S, et al. (2006) Polar localization of the autotransporter family of large bacterial virulence proteins. J Bacteriol 188:4841-4850.
21. Edgar R, et al. (2008) Bacteriophage infection is targeted to cellular poles. Mol Microbiol 68:1107-1116.
22. Winkler H, Taylor KA (2006) Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy 106:240-254.
23. Radermacher M (1992) Electron Tomography - Three-dimensional imaging with the Transmission Electron Microscopy, ed Frank J (Plenum, New York), pp 91-115.
24. Liang Y, Ke EY, Zhou ZH (2002) IMIRS: A high-resolution 3D reconstruction package integrated with a relational image database. J Struct Biol 137:292-304.
25. Zhou ZH, Chiu W (2003) Determination of icosahedral virus structures by electron cryomicroscopy at subnanometer resolution. Adv Protein Chem 64:93-124.
26. Zhou ZH, Chen DH, Jakana J, Rixon FJ, ChiuW(1999) Visualization of tegument-capsid interactions and DNA in intact herpes simplex virus type 1 virions. J Virol 73: 3210-3218.
27. Pettersen EF, et al. (2004) UCSF Chimera - a visualization system for exploratory research and analysis. J Comput Chem 25:1605-1612.