Approaches to determine stoichiometry of viral assembly components

Journal of Virology

Volumn 71, Issue 1, 1997, Pages 487-494

  Trottier, Mark ^a   Guo, Peixuan ^a,b  

^a PURDUE UNIVERSITY   (United States)

^b Purdue University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENZYME; OLIGOMER; RNA; STRUCTURAL PROTEIN; VIRUS GLYCOPROTEIN;

ARTICLE; BACTERIOPHAGE; BINDING AFFINITY; DNA PACKAGING; MUTANT; NONHUMAN; PRIORITY JOURNAL; STOICHIOMETRY; VIRION; VIRUS; VIRUS ASSEMBLY; VIRUS CAPSID;

EID: 0031060162     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.71.1.487-494.1997     Document Type: Article

References (46)

1. Anderson, D. Personal communication.
2. 1a.Anderson, D., and J. W. Bodley. 1990. Role of RNA in bacteriophage φ29 DNA packaging. J. Struct. Biol. 104:70-74.
3. Anderson, D. L., H. H. Hickman, and B. E. Reilly. 1996. Structure of Bacillus subtilis bacteriophage φ29 and the length of φ29 deoxyribonucleic acid. J. Bacteriol. 91:2081-2089.
4. Anderson, D. L., and B. Reilly. 1993. Morphogenesis of bacteriophage φ29, p. 859-867. In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and other gram-positive bacteria: biochemistry, physiology, and molecular genetics. American Society for Microbiology, Washington, D.C.
5. Bazinet, C. and J. King. 1985. The DNA translocation vertex of dsDNA bacteriophages. Annu. Rev. Microbiol. 39:109-129.
6. Becker, A., M. Murray, and M. Gold. 1977. Early events in the in vitro packaging of bacteriophage DNA. Virology 78:291-305.
7. Bjornsti, M.-A., B. E. Reilly, and D. L. Anderson. 1984. Bacteriophage φ29 proteins required for in vitro DNA-gp3 packaging. J. Virol. 50:766-772.
8. Black, L. W. 1989. DNA packaging in dsDNA bacteriophages. Annu. Rev. Microbiol. 43:267-292.
9. Carrascosa, J. L., E. Mendez, J. Corral, V. Rubio, G. Ramirez, M. Salas, and E. Vinuela. 1981. Structural organization of Bacillus subtilis phage φ29. A model. Virology 111:401-413.
10. Casjens, S., and R. Hendrix. 1988. Control mechanisms in dsDNA bacteriophage assembly, p. 15-92. In R. Calendar (ed.), The bacteriophages, vol. 1. Plenum Publishing Corp., New York, N.Y.
11. Chen, C., and P. Guo. 1997. Magnesium-induced conformational change of packaging RNA for procapsid recognition and binding during phage φ29 DNA encapsidation. J. Virol. 71:495-500.
12. Cohen, F. E., R. A. Abarbanel, I. D. Kuntz, and R. J. Fletterick. 1986. Turn prediction in proteins using a pattern-matching approach. Biochemistry 25:266-275.
13. 11a.Coombs, D. H., and G. D. Pearson. 1978. Filter-binding assay for covalent DNA-protein complexes: adenovirus DNA-terminal protein complex. Biochemistry 75:5291-5295.
14. Dubé, P., P. Tavares, R. Lurz, and M. van Heel. 1993. The portal protein of bacteriophage SPP1: a DNA pump with 13-fold symmetry. EMBO J. 12:1303-1309.
15. Fujisawa, H., and P. Hearing. 1994. Structure, function and specificity of the DNA packaging signals in double-stranded DNA viruses. Semin. Virol. 5:5-13.
16. Grimes, S., and D. Anderson. 1990. RNA dependence of the bacteriophage φ29 DNA packaging ATPase. J. Mol. Biol. 215:559-566.
17. Guo, P. 1994. Introduction: principles, perspectives, and potential applications in viral assembly. Semin. Virol. 5:1-3.
18. Guo, P., S. Bailey, J. W. Bodley, and D. Anderson. 1987. Characterization of the small RNA of the bacteriophage φ29 DNA packaging machine. Nucleic Acids Res. 15:7081-7090.
19. Guo, P., S. Erickson, and D. Anderson. 1987. A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA. Science 236:690-694.
20. Guo, P., S. Erickson, W. Xu, N. Olson, T. S. Baker, and D. Anderson. 1991. Regulation of the phage φ29 prohead shape and size by the portal vertex. Virology 183:366-373.
21. Guo, P., S. Grimes, and D. Anderson. 1986. A defined system for in vitro packaging of DNA-gp3 of the Bacillus subtilis bacteriophage φ29. Proc. Natl. Acad. Sci. USA 83:3505-3509.
22. Guo, P., C. Peterson, and D. Anderson. 1987. Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage φ29. J. Mol. Biol. 197:229-236.
23. Guo, P., B. Rajogopal, D. Anderson, S. Erickson, and C.-S. Lee. 1991. sRNA of bacteriophage φ29 of B. subtilis mediates DNA packaging of φ29 proheads assembled in E. coli. Virology 185:395-400.
24. Guo, P., and M. Trottier. 1994. Biological and biochemical properties of the small viral RNA (pRNA) essential for the packaging of the double-stranded DNA of phage φ29. Semin. Virol. 5:27-37.
25. Israel, J. V., T. H. Anderson, and M. Levine. 1967. In vitro morphogenesis of phage P22 from heads and base-plate parts. Proc. Natl. Acad. Sci. USA 57:284-291.
26. Lee, C. S., and P. Guo. 1994. A highly sensitive system for the assay of in vitro viral assembly of bacteriophage φ29 of Bacillus subtilis. Virology 202:1039-1042.
27. Lee, C. S., and P. Guo. 1995. Sequential interactions of structural proteins in phage φ29 procapsid assembly. J. Virol. 69:5024-5032.
28. Lee, C. S., and P. Guo. 1995. In vitro assembly of infectious virions of double-stranded DNA phage φ29 from cloned gene products and synthetic nucleic acids. J. Virol. 69:5018-5023.
29. Murialdo, H. 1991. Bacteriophage lambda DNA maturation and packaging. Annu. Rev. Biochem. 60:125-153.
30. Prevelige, P. E. J., D. Thomas, and J. King. 1988. Scaffolding protein regulates the polymerization of P22 coat subunits into icosahedral shells in vitro. J. Mol. Biol. 202:743-757.
31. Reid, R. J. D., J. W. Bodley, and D. Anderson. 1994. Characterization of the prohead-pRNA interaction of bacteriophage φ29. J. Biol. Chem. 269:5157-5162.
32. 29a.Tellinghuisen, T., and P. Guo. Unpublished results.
33. 29b.Thomas, C. A., Jr., K. Saigo, E. McLeod, and J. Ito. 1979. The separation of DNA segments attached to proteins. Anal. Biochem. 93:158-166.
34. Thomas, D., and P. Prevelige. 1991. A pilot protein participates in the initiation of P22 procapsid assembly. Virology 182:637-681.
35. Trottier, M., C. L. Zhang, and P. Guo. 1996. Complete inhibition of virion assembly in vivo with mutant pRNA essential for phage φ29 DNA packaging. J. Virol. 70:55-61.
36. Tsuprun, V., D. Anderson, and E. H. Egelman. 1994. The bacteriophage φ29 head-tail connector shows 13-fold symmetry in both hexagonally packed arrays and as single particles. Biophys, J. 66:2139-2150.
37. Turnquist, S., M. Simon, E. Egelman, and D. Anderson. 1992. Supercoiled DNA wraps around the bacteriophage φ29 head-tail connector. Proc. Natl. Acad. Sci. USA 89:10479-10483.
38. Villaneuva, J. M., J. M. Lazaro, and M. Salas. 1981. Purification, properties and assembly of the neck-appendage protein of the Bacillus subtilis phage φ29. Eur. J. Biochem. 117:499-505.
39. Waterman, M. S., L. Gordon, and R. Arratia. 1987. Phase transitions in sequence matches and nucleic acid structure. Proc. Natl. Acad. Sci. USA 84:1239-1243.
40. White, J. H., N. R. Cozzarelli, and W. R. Bauer. 1988. Helical repeat and linking number of surface-wrapped DNA. Science 241:323-327.
41. Wichitwechkarn, J., S. Bailey, J. W. Bodley, and D. Anderson. 1989. Prohead RNA of bacteriophage φ29: size, stoichiometry and biological activity. Nucleic Acids Res. 17:3459-3468.
42. Zhang, C. L., C.-S. Lee, and P. Guo. 1994. The proximate 5′ and 3′ ends of the 120-base viral RNA (pRNA) are crucial for the packaging of bacteriophage φ29 DNA, Virology 201:77-85.
43. Zhang, C. L., K. Garver, and P. Guo. 1995. Inhibition of phage φ29 assembly by antisense oligonucleotides targeting viral pRNA essential for DNA packaging. Virology 211:568-576.
44. Zhang, C. L., T. Tellinghuisen, and P. Guo. 1995. Confirmation of the helical structure of the 5′/3′ termini of the essential DNA: packaging pRNA of phage φ29. RNA 1:1041-1050.
45. Zhang, C. L., M. Trottier, and P. X. Guo. 1995. Circularly permuted viral pRNA active and specific in the packaging of bacteriophage φ29 DNA Virology 207:442-451.
46. Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.