-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0041153826
-
Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations
-
Ampe, F., N. ben Omar, C. Moizan, C. Wacher, and J. P. Guyot. 1999. Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations. Appl. Environ. Microbiol. 65:5464-5473.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5464-5473
-
-
Ampe, F.1
Ben Omar, N.2
Moizan, C.3
Wacher, C.4
Guyot, J.P.5
-
3
-
-
0036152140
-
Biodiversity of the bacterial flora on the surface of a smear cheese
-
Brennan, N. M., A. C. Ward, T. P. Beresford, P. F. Fox, M. Goodfellow, and T. M. Cogan. 2002. Biodiversity of the bacterial flora on the surface of a smear cheese. Appl. Environ. Microbiol. 68:820-830.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 820-830
-
-
Brennan, N.M.1
Ward, A.C.2
Beresford, T.P.3
Fox, P.F.4
Goodfellow, M.5
Cogan, T.M.6
-
4
-
-
0033936631
-
Molecular diversity of Leuconostoc mesenteroides and Leuconostoc citreum isolated from traditional french cheeses as revealed by RAPD fingerprinting, 16S rDNA sequencing, and 16S rDNA fragment amplification
-
Cibik, R., E. Lepage, and P. Talliez. 2000. Molecular diversity of Leuconostoc mesenteroides and Leuconostoc citreum isolated from traditional french cheeses as revealed by RAPD fingerprinting, 16S rDNA sequencing, and 16S rDNA fragment amplification. Syst. Appl. Microbiol. 23: 267-278.
-
(2000)
Syst. Appl. Microbiol.
, vol.23
, pp. 267-278
-
-
Cibik, R.1
Lepage, E.2
Talliez, P.3
-
5
-
-
0034256049
-
Direct profiling of the yeast dynamics in wine fermentations
-
Cocolin, L., L. F. Bisson, and D. A. Mills. 2000. Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol. Lett. 189:81-87.
-
(2000)
FEMS Microbiol. Lett.
, vol.189
, pp. 81-87
-
-
Cocolin, L.1
Bisson, L.F.2
Mills, D.A.3
-
6
-
-
0035511958
-
Denaturing gradient gel electrophoresis analysis of the 16S rRNA gene V1 region to monitor dynamic changes in the bacterial population during fermentation of Italian sausages
-
Cocolin, L., M. Manzano, C. Cantoni, and G. Comi. 2001. Denaturing gradient gel electrophoresis analysis of the 16S rRNA gene V1 region to monitor dynamic changes in the bacterial population during fermentation of Italian sausages. Appl. Environ. Microbiol. 67:5113-5121.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5113-5121
-
-
Cocolin, L.1
Manzano, M.2
Cantoni, C.3
Comi, G.4
-
7
-
-
0035106814
-
Molecular evaluation of microbial diversity occurring in different types of mozzarella cheese
-
Coppola, S., G. Blaiotta, D. Ercolini, and G. Moschetti. 2001. Molecular evaluation of microbial diversity occurring in different types of mozzarella cheese. J. Appl. Microbiol. 90:414-420.
-
(2001)
J. Appl. Microbiol.
, vol.90
, pp. 414-420
-
-
Coppola, S.1
Blaiotta, G.2
Ercolini, D.3
Moschetti, G.4
-
8
-
-
0036624813
-
Molecular community analysis of microbial diversity
-
Dahllof, I. 2002. Molecular community analysis of microbial diversity. Curr. Opin. Biotechnol. 13:213-217.
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 213-217
-
-
Dahllof, I.1
-
9
-
-
0032323558
-
16S rDNA sequence diversity of a culture-accessible part of an anaerobic digestor bacterial community
-
Delbès, C., J. J. Godon, and R. Moletta. 1998. 16S rDNA sequence diversity of a culture-accessible part of an anaerobic digestor bacterial community. Environ. Microbiol. 4:267-275.
-
(1998)
Environ. Microbiol.
, vol.4
, pp. 267-275
-
-
Delbès, C.1
Godon, J.J.2
Moletta, R.3
-
10
-
-
0035403492
-
Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques
-
Diez, B., C. Pedros-Alio, T. L. Marsh, and R. Massana. 2001. Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Appl. Environ. Microbiol. 67:2942-2951.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2942-2951
-
-
Diez, B.1
Pedros-Alio, C.2
Marsh, T.L.3
Massana, R.4
-
11
-
-
0033135928
-
Reviewing the DA001-files: A 16S rRNA chase on suspect #X99967, a bacillus and Dutch underground activist
-
Felske, A. 1999. Reviewing the DA001-files: a 16S rRNA chase on suspect #X99967, a bacillus and Dutch underground activist. J. Microbiol. Methods 36:77-93.
-
(1999)
J. Microbiol. Methods
, vol.36
, pp. 77-93
-
-
Felske, A.1
-
12
-
-
0029805854
-
Direct ribosome isolation from soil to extract bacterial rRNA for community analysis
-
Felske, A., B. Engelen, U. Nubel, and H. Backhaus. 1996. Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl. Environ. Microbiol. 62:4162-4167.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4162-4167
-
-
Felske, A.1
Engelen, B.2
Nubel, U.3
Backhaus, H.4
-
13
-
-
0032857111
-
Searching for predominant soil bacteria: 16S rDNA cloning versus strain cultivation
-
Felske, A., A. Wolterink, R. van Lis, W. M. de Vos, and A. D. L. Akkermans. 1999. Searching for predominant soil bacteria: 16S rDNA cloning versus strain cultivation. FEMS Microbiol. Ecol. 30:137-145.
-
(1999)
FEMS Microbiol. Ecol.
, vol.30
, pp. 137-145
-
-
Felske, A.1
Wolterink, A.2
Van Lis, R.3
De Vos, W.M.4
Akkermans, A.D.L.5
-
14
-
-
0032809572
-
Phenotypic and genotypic characterization of non-starter lactic acid bacteria in mature cheddar cheese
-
Fitzsimons, N. A., T. M. Cogan, S. Condon, and T. Beresford. 1999. Phenotypic and genotypic characterization of non-starter lactic acid bacteria in mature cheddar cheese. Appl. Environ. Microbiol. 65:3418-3426.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3418-3426
-
-
Fitzsimons, N.A.1
Cogan, T.M.2
Condon, S.3
Beresford, T.4
-
15
-
-
0032833605
-
Capillary electrophoresis-single-strand conformation polymorphism analysis for rapid identification of Pseudomonas aeruginosa and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis
-
Ghozzi, R., P. Morand, A. Ferroni, J. L. Beretti, E. Bingen, C. Segonds, M. O. Husson, D. Izard, P. Berche, and J. L. Gaillard. 1999. Capillary electrophoresis-single-strand conformation polymorphism analysis for rapid identification of Pseudomonas aeruginosa and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. J. Clin. Microbiol. 37:3374-3379.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 3374-3379
-
-
Ghozzi, R.1
Morand, P.2
Ferroni, A.3
Beretti, J.L.4
Bingen, E.5
Segonds, C.6
Husson, M.O.7
Izard, D.8
Berche, P.9
Gaillard, J.L.10
-
16
-
-
0033508956
-
Microbiology and biochemistry of Fossa (pit) cheese
-
Gobbetti, M., B. Folkertsma, P. F. Fox, A. Corsetti, E. Smacchi, M. De Angelis, J. Rossi, K. Kilcawley, and M. Cortini. 1999. Microbiology and biochemistry of Fossa (pit) cheese. Int. Dairy J. 9:763-773.
-
(1999)
Int. Dairy J.
, vol.9
, pp. 763-773
-
-
Gobbetti, M.1
Folkertsma, B.2
Fox, P.F.3
Corsetti, A.4
Smacchi, E.5
De Angelis, M.6
Rossi, J.7
Kilcawley, K.8
Cortini, M.9
-
17
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon, J. J., E. Zumstein, P. Dabert, F. Habouzit, and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63:2802-2813.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
19
-
-
0032705563
-
Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil
-
Hengstmann, U., K. J. Chin, P. H. Janssen, and W. Liesack. 1999. Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil. Appl. Environ. Microbiol. 65:5050-5058.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5050-5058
-
-
Hengstmann, U.1
Chin, K.J.2
Janssen, P.H.3
Liesack, W.4
-
20
-
-
0030739128
-
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
-
Heuer, H., M. Kresk, P. Baker, K. Smalla, and E. M. H. Wellington. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:3233-3241.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3233-3241
-
-
Heuer, H.1
Kresk, M.2
Baker, P.3
Smalla, K.4
Wellington, E.M.H.5
-
22
-
-
0034528803
-
Single-strand conformation polymorphism of 16S rDNA Archae during start-up of an anaerobic digester
-
Leclerc, M., C. Delbes, R. Moletta, and J. J. Godon. 2001. Single-strand conformation polymorphism of 16S rDNA Archae during start-up of an anaerobic digester. FEMS Microbiol. Ecol. 34:213-220.
-
(2001)
FEMS Microbiol. Ecol.
, vol.34
, pp. 213-220
-
-
Leclerc, M.1
Delbes, C.2
Moletta, R.3
Godon, J.J.4
-
23
-
-
0029786831
-
Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism
-
Lee, D. H., Y. G. Zo, and S. J. Kim. 1996. Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism. Appl. Environ. Microbiol. 62: 3112-3120.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3112-3120
-
-
Lee, D.H.1
Zo, Y.G.2
Kim, S.J.3
-
24
-
-
0034933611
-
Comparative single-strand conformation polymorphism (SSCP) and microscopy-based analysis of nitrogen cultivation interactive effects on the fungal community of a semiarid steppe soil
-
Lowell, J. L., and D. A. Klein. 2001. Comparative single-strand conformation polymorphism (SSCP) and microscopy-based analysis of nitrogen cultivation interactive effects on the fungal community of a semiarid steppe soil. FEMS Microbiol. Ecol. 36:85-92.
-
(2001)
FEMS Microbiol. Ecol.
, vol.36
, pp. 85-92
-
-
Lowell, J.L.1
Klein, D.A.2
-
25
-
-
0032918722
-
A new version of the RDP (Ribosomal Database Project)
-
Maidak, B. L., J. R. Cole, C. T. Parker, G. M. Garrity, N. Larsen, B. Li, T. G. Lilburn, M. J. McCaughey, G. J. Olsen, R. Overbeek, S. Pramanik, T. M. Schmidt, J. M. Tiedje, and C. R. Woese. 1999. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res. 27:171-173.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 171-173
-
-
Maidak, B.L.1
Cole, J.R.2
Parker, C.T.3
Garrity, G.M.4
Larsen, N.5
Li, B.6
Lilburn, T.G.7
McCaughey, M.J.8
Olsen, G.J.9
Overbeek, R.10
Pramanik, S.11
Schmidt, T.M.12
Tiedje, J.M.13
Woese, C.R.14
-
26
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder, M. M., J. M. Arrieta, G. Muyzer, C. Winter, and G. J. Herndl. 1999. Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65: 3518-3525.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3518-3525
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.J.5
-
27
-
-
0032741245
-
Molecular and physiological characterization of dominant bacterial populations in traditional mozzarella cheese processing
-
Morea, M., F. Baruzzi, and P. S. Cocconcelli. 1999. Molecular and physiological characterization of dominant bacterial populations in traditional mozzarella cheese processing. J. Appl. Microbiol. 87:574-582.
-
(1999)
J. Appl. Microbiol.
, vol.87
, pp. 574-582
-
-
Morea, M.1
Baruzzi, F.2
Cocconcelli, P.S.3
-
28
-
-
0036325188
-
Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis
-
Ogier, J. C., O. Son, A. Gruss, P. Tailliez, and A. Delacroix-Buchet. 2002. Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis. Appl. Environ. Microbiol. 68:3691-3701.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3691-3701
-
-
Ogier, J.C.1
Son, O.2
Gruss, A.3
Tailliez, P.4
Delacroix-Buchet, A.5
-
29
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn, A. M., E. R. B. Moore, and K. N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.B.2
Timmis, K.N.3
-
30
-
-
0034105806
-
Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation-polymorphism-based genetic profiles of small-subunit rRNA genes
-
Peters, S., S. Koschinsky, F. Schwieger, and C. C. Tebbe. 2000. Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation-polymorphism-based genetic profiles of small-subunit rRNA genes. Appl. Environ. Microbiol. 66:930-936.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 930-936
-
-
Peters, S.1
Koschinsky, S.2
Schwieger, F.3
Tebbe, C.C.4
-
31
-
-
0036211215
-
Diversity, dynamics, and activity of bacterial communities during production of an artisanal sicilian cheese as evaluated by 16S rRNA analysis
-
Randazzo, C. L., S. Torriani, A. D. L. Akkermans, W. M. de Vos, and E. E. Vaughan. 2002. Diversity, dynamics, and activity of bacterial communities during production of an artisanal sicilian cheese as evaluated by 16S rRNA analysis. Appl. Environ. Microbiol. 68:1882-1892.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1882-1892
-
-
Randazzo, C.L.1
Torriani, S.2
Akkermans, A.D.L.3
De Vos, W.M.4
Vaughan, E.E.5
-
32
-
-
0035431143
-
Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling
-
Schmalenberger, A., F. Schwieger, and C. C. Tebbe. 2001. Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Appl. Environ. Microbiol. 67:3557-3563.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3557-3563
-
-
Schmalenberger, A.1
Schwieger, F.2
Tebbe, C.C.3
-
33
-
-
0032076170
-
Microbiological characterization of Serra da Estrela cheese throughout its appellation d'origine protegee region
-
Tavaria, F. K., and F. X. Malcata. 1998. Microbiological characterization of Serra da Estrela cheese throughout its appellation d'origine protegee region. J. Food Protein 61:601-607.
-
(1998)
J. Food Protein
, vol.61
, pp. 601-607
-
-
Tavaria, F.K.1
Malcata, F.X.2
-
34
-
-
0033960337
-
Rapid identification of bacteria from positive blood cultures by fluorescence-based PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene
-
Turenne, C. Y., E. Witwicki, D. J. Hoban, J. A. Karlowsky, and A. M. Kabani. 2000. Rapid identification of bacteria from positive blood cultures by fluorescence-based PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene. J. Clin. Microbiol. 38:513-520.
-
(2000)
J. Clin. Microbiol.
, vol.38
, pp. 513-520
-
-
Turenne, C.Y.1
Witwicki, E.2
Hoban, D.J.3
Karlowsky, J.A.4
Kabani, A.M.5
-
35
-
-
0343683396
-
Identification of yeasts and coryneform bacteria from the surface microflora of brick cheeses
-
Valdes-Stauber, N., S. Scherer, and H. Seiler. 1997. Identification of yeasts and coryneform bacteria from the surface microflora of brick cheeses. Int. J. Food Microbiol. 34:115-129.
-
(1997)
Int. J. Food Microbiol.
, vol.34
, pp. 115-129
-
-
Valdes-Stauber, N.1
Scherer, S.2
Seiler, H.3
-
36
-
-
0031684010
-
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
-
Zoetendal, E. G., A. D. Akkermans, and W. M. De Vos. 1998. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64:3854-3859.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3854-3859
-
-
Zoetendal, E.G.1
Akkermans, A.D.2
De Vos, W.M.3
-
37
-
-
0034547651
-
Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis
-
Zumstein, E., R. Moletta, and J. J. Godon. 2000. Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis. Environ. Microbiol. 2:69-78.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 69-78
-
-
Zumstein, E.1
Moletta, R.2
Godon, J.J.3
|