Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 4, 2005, Pages 1471-1486

  Bowman, John P ^a   Nichols, David S ^a  

^a UNIVERSITY OF TASMANIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ICE; RNA 16S; SILICON DIOXIDE;

ALGA; ANIMAL CELL; ANTARCTICA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOFILM; BIZIONIA; CLADISTICS; CONTROLLED STUDY; CRUSTACEA; CYANOBACTERIUM; FLAVOBACTERIACEAE; GELIDIBACTER; GENUS; GILLISIA; GRAM NEGATIVE AEROBIC RODS AND COCCI; LACINUTRIX COPEPODICOLA; LAKE; MARINE ENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEA; SEASHORE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SPECIES HABITAT; STRAIN DIFFERENCE; SUBSAXIBACTER BROADYI; SUBSAXIMICROBIUM SAXINQUILINUS; SUBSAXIMICROBIUM WYNNWILLIAMSII; TAXONOMY;

ALGAE; AMPHIPODA; ANIMALS; ANTARCTIC REGIONS; BACTERIAL TYPING TECHNIQUES; COPEPODA; DNA, BACTERIAL; DNA, RIBOSOMAL; ENVIRONMENT; FLAVOBACTERIACEAE; GENES, RRNA; GENOTYPE; ICE COVER; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; QUARTZ; RNA, RIBOSOMAL, 16S; SEAWATER; SPECIES SPECIFICITY;

ALGAE; AMPHIPODA; CALANOIDA; COPEPODA; CRUSTACEA; CYANOBACTERIA; FLAVOBACTERIACEAE; GELIDIBACTER; GILLISIA; NEGIBACTERIA; PARALABIDOCERA ANTARCTICA;

EID: 22544462274     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63527-0     Document Type: Article

References (41)

1. Abell, G. C. J. & Bowman, J. P. (2005). Ecological and biogeography relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol 51, 265-277.
2. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
3. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
4. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
5. Bowman, J. P. (2004). Psychrophilic prokaryote structural-functional relationships, biogeography and evolution within marine sediment. Cell Mol Biol 50, 503-515.
6. Bowman, I. P. & McCuaig, R. D. (2003). Diversity and biogeography of prokaryotes dwelling in Antarctic continental shelf sediment. Appl Environ Microbiol 69, 2463-2484.
7. Bowman, J. P. & Nichols, D. S. (2002). Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats. Int J Syst Evol Microbiol 52, 1533-1541.
8. Bowman, I. P. & Nowak, B. (2004). Salmonid gill bacteria and their relationship to amoebic gill disease. J Fish Dis 27, 483-492.
9. Bowman, J. P., McCammon, S. A., Brown, J. L., Nichols, P. D. & McMeekin, T. A. (1997a). Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47, 670-677.
10. Bowman, J. P., McCammon, S. A., Brown, M. V., Nichols, D. S. & McMeekin, T. A. (1997b). Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63, 3068-3078.
11. Bowman, J. P., McCammon, S. A., Lewis, T., Skerratt, J. H., Brown, J. L., Nichols, D. S. & McMeekin, T. A. (1998). Description of Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 1601-1609.
12. Bowman, J. P., Mancuso Nichols, C. & Gibson, J. A. E. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
13. Brinkmeyer, R., Knittel, K., Jurgens, J., Weyland, H., Amann, R. & Helmke, E. (2003). Diversity and structure of bacterial communities in arctic versus antarctic pack ice. Appl Environ Microbiol 69, 6610-6619.
14. Brown, M. V. & Bowman, J. P. (2001). A molecular phylogenetic survey of polar sea ice microbial communities (SIMCO). FEMS Microbiol Ecol 35, 267-275.
15. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
16. Cho, J.-C. & Giovannoni, S. J. (2003). Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Syst Appl Microbiol 26, 76-83.
17. Cho, J.-C. & Giovannoni, S. J. (2004). Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol 54, 1101-1106.
18. Garrity, G. M. & Holt, J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
19. Gosink, J. J., Woese, C. R. & Staley, J. T. (1998). Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of ' Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48, 223-235.
20. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridisation from renaturation rates. Syst Appl Microbiol 4, 184-192.
21. Ivanova, E. P., Nedashkovskaya, O. I., Chun, J. & 7 other authors (2001). Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov. Int J Syst Evol Microbiol 51, 1987-1995.
22. Ivanova, E. P., Alexeeva, Y. V., Flavier, S., Wright, J. P., Zhukova, N. V., Gorshkova, N. M., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2004). Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae. Int J Syst Evol Microbiol 54, 705-711.
23. Junge, K., Eicken, H. & Deming, J. W. (2004). Bacterial activity at -2 to -20 °C in Arctic wintertime sea ice. Appl Environ Microbiol 70, 550-557.
24. Kirchman, D. L. (2002). The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39, 91-100.
25. Macián, M. C., Pujalte, M. J., Márquez, M. C., Ludwig, W., Ventosa, A., Garay, E. & Schleifer, K. H. (2002). Gelidibacter mesophilus sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Int J Syst Evol Microbiol 52, 1325-1329.
26. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
27. Moss, C. W. & Guerrant, G. O. (1983). Separation of bacterial ubiquinones by reverse phase high pressure liquid chromatography. J Clin Microbiol 18, 15-17.
28. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2003a). Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Kornm. Int J Syst Evol Microbiol 53, 1967-1971.
29. Nedashkovskaya, O. I., Suzuki, M., Vysotskii, M. V. & Mikhailov, V. V. (2003b). Vitellibacter vladivostokensis gen. nov., sp. nov., a new member of the phylum Cytophaga-Flavobacterium-Bacteroides. Int J Syst Evol Microbiol 53, 1281-1286.
30. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2004a). Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. Int J Syst Evol Microbiol 54, 1017-1023.
31. Nedashkovskaya, O. I., Kim, S. B., Han, S. K., Rhee, M. S., Lysenko, A. M., Falsen, E., Frolova, G. M., Mikhailov, V. V. & Bae, K. S. (2004b). Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol 54, 119-123.
32. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2004c). Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae. Int J Syst Evol Microbiol 54, 1257-1261.
33. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 9 other authors (2005a). Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol 55, 49-55.
34. Nedashkovskaya, O. I., Kim, S. B., Lee, K. H., Mikhailov, V. V. & Bae, K. S. (2005b). Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae, isolated from sea water. Int J Syst Evol Microbiol 55, 321-323.
35. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V. & Bae, K. S. (2005c). Bizionia paragorgiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the soft coral Paragoria arborea. Int J Syst Evol Microbiol 55, 375-378.
36. Sly, L. I., Blackall, L. L., Kraat, P. C., Tian-Shen, T. & Sangkhobol, V. (1986). The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 5, 139-156.
37. Smith, M. C., Bowman, J. P., Scott, F. J. & Line, M. A. (2000). Sublithic bacteria associated with Antarctic quartz stones. Antarct Sci 12, 177-184.
38. Sohn, J. H., Lee, J.-H., Yi, H., Chun, J., Bae, K. S., Ahn, T.-Y. & Kim, S.-J. (2004). Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide. Int J Syst Evol Microbiol 54, 675-680.
39. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652.
40. Van Trappen, S., Mergaert, J., Van Eygen, S., Dawyndt, P., Cnockaert, M. C. & Swings, J. (2002). Diversity of 746 heterotrophic bacteria isolated from microbiol mats from ten Antarctic lakes. Syst Appl Microbiol 25, 603-610.
41. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Gillisia limnaea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a microbial mat in Lake Fryxell, Antarctica. Int J Syst Evol Microbiol 54, 445-448.