-
1
-
-
77955505159
-
The 20s proteasome splicing activity discovered by splicemet
-
10.1371/journal.pcbi.1000830
-
Liepe J, Mishto M, Textoris-Taube K, Janke K, Keller C, et al. (2010) The 20s proteasome splicing activity discovered by splicemet. PLoS Comput Biol 6: e1000830 doi:10.1371/journal.pcbi.1000830.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Liepe, J.1
Mishto, M.2
Textoris-Taube, K.3
Janke, K.4
Keller, C.5
-
2
-
-
77955477366
-
On the zwitterionic nature of gas-phase peptides and protein ions
-
10.1371/journal.pcbi.1000775
-
Marchese R, Grandori R, Carloni P, Raugei S, (2010) On the zwitterionic nature of gas-phase peptides and protein ions. PLoS Comput Biol 6: e1000775 doi:10.1371/journal.pcbi.1000775.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Marchese, R.1
Grandori, R.2
Carloni, P.3
Raugei, S.4
-
3
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng JK, McCormack AL, Yates JR III, (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Mass Spectrom 5: 976-989.
-
(1994)
J Am Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates III, J.R.3
-
4
-
-
0042972838
-
A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and sequest scores
-
Anderson DC, Li W, Payan DG, Noble WS, (2003) A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and sequest scores. J Proteome Res 2: 137-146.
-
(2003)
J Proteome Res
, vol.2
, pp. 137-146
-
-
Anderson, D.C.1
Li, W.2
Payan, D.G.3
Noble, W.S.4
-
5
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identification made by MS/MS and database search
-
Keller A, Nesvizhskii AI, Kolker E, Aebersold R, (2002) Empirical statistical model to estimate the accuracy of peptide identification made by MS/MS and database search. Anal Chem 74: 5383-5392.
-
(2002)
Anal Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
6
-
-
0742305695
-
Intensity-based protein identification by machine learning from a library of tandem mass spectra
-
Elias JE, Gibbons FD, King OD, Roth FP, Gygi SP, (2004) Intensity-based protein identification by machine learning from a library of tandem mass spectra. Nat Biotechnol 22: 214-219.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 214-219
-
-
Elias, J.E.1
Gibbons, F.D.2
King, O.D.3
Roth, F.P.4
Gygi, S.P.5
-
7
-
-
35748972060
-
A semi-supervised machine learning technique for peptide identification from shotgun proteomics datasets
-
Käll L, Canterbury J, Weston J, Noble WS, MacCoss MJ, (2007) A semi-supervised machine learning technique for peptide identification from shotgun proteomics datasets. Nat Methods 4: 923-25.
-
(2007)
Nat Methods
, vol.4
, pp. 923-925
-
-
Käll, L.1
Canterbury, J.2
Weston, J.3
Noble, W.S.4
MacCoss, M.J.5
-
8
-
-
38649125220
-
Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics
-
Choi H, Nesvizhskii AI, (2008) Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics. J Proteome Res 7: 254-265.
-
(2008)
J Proteome Res
, vol.7
, pp. 254-265
-
-
Choi, H.1
Nesvizhskii, A.I.2
-
9
-
-
0036393898
-
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb DL, McDonald WH, Yates JR III, (2002) DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res 1: 21-26.
-
(2002)
J Proteome Res
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates III, J.R.3
-
10
-
-
68549092907
-
IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering
-
Ma ZQ, Dasari S, Chambers MC, Litton M, Sobecki SM, et al. (2009) IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering. J Proteome Res 8: 3872-3881.
-
(2009)
J Proteome Res
, vol.8
, pp. 3872-3881
-
-
Ma, Z.Q.1
Dasari, S.2
Chambers, M.C.3
Litton, M.4
Sobecki, S.M.5
-
11
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii AI, Keller A, Kolker E, Aebersold R, (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75: 4646-4658.
-
(2003)
Anal Chem
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
12
-
-
77949695293
-
Scaffold: A bioinformatic tool for validating ms/ms-based proteomic studies
-
Searle BC, (2010) Scaffold: A bioinformatic tool for validating ms/ms-based proteomic studies. Proteomics 10: 1265-1269.
-
(2010)
Proteomics
, vol.10
, pp. 1265-1269
-
-
Searle, B.C.1
-
13
-
-
34147115205
-
EBP, a program for protein identification using multiple tandem mass spectrometry datasets
-
Price TS, Lucitt MB, Wu W, Austin DJ, Pizarro A, et al. (2007) EBP, a program for protein identification using multiple tandem mass spectrometry datasets. Mol Cell Proteomics 6: 527-536.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 527-536
-
-
Price, T.S.1
Lucitt, M.B.2
Wu, W.3
Austin, D.J.4
Pizarro, A.5
-
14
-
-
34548802987
-
Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies
-
Feng J, Naiman DQ, Cooper B, (2007) Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies. Bioinformatics 23: 2210-2217.
-
(2007)
Bioinformatics
, vol.23
, pp. 2210-2217
-
-
Feng, J.1
Naiman, D.Q.2
Cooper, B.3
-
15
-
-
38349166945
-
A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry
-
Shen C, Wang Z, Shankar G, Zhang X, Li L, (2008) A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry. Bioinformatics 24: 202-208.
-
(2008)
Bioinformatics
, vol.24
, pp. 202-208
-
-
Shen, C.1
Wang, Z.2
Shankar, G.3
Zhang, X.4
Li, L.5
-
16
-
-
77955459838
-
A nested mixture model for protein identification using mass spectrometry
-
Li Q, MacCoss MJ, Stephens M, (2010) A nested mixture model for protein identification using mass spectrometry. Annals of Applied Sciences 4: 962-987.
-
(2010)
Annals of Applied Sciences
, vol.4
, pp. 962-987
-
-
Li, Q.1
MacCoss, M.J.2
Stephens, M.3
-
17
-
-
47249084222
-
A Bayesian approach to protein inference problem in shotgun proteomics
-
In: Vingron M, Wong L, editors, Berlin, Springer, Volume 12 of Lecture Notes in Bioinformatics
-
Li YF, Arnold RJ, Li Y, Radivojac P, Sheng Q, et al. (2008) A Bayesian approach to protein inference problem in shotgun proteomics. In: Vingron M, Wong L, editors. Proceedings of the Twelfth Annual International Conference on Computational Molecular Biology Berlin Springer pp. 167-180 Volume 12 of Lecture Notes in Bioinformatics.
-
(2008)
Proceedings of the Twelfth Annual International Conference on Computational Molecular Biology
, pp. 167-180
-
-
Li, Y.F.1
Arnold, R.J.2
Li, Y.3
Radivojac, P.4
Sheng, Q.5
-
18
-
-
77957339566
-
Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data
-
Serang O, MacCoss MJ, Noble WS, (2010) Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data. J Proteome Res 9: 5346-5357.
-
(2010)
J Proteome Res
, vol.9
, pp. 5346-5357
-
-
Serang, O.1
MacCoss, M.J.2
Noble, W.S.3
-
19
-
-
77957221582
-
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
-
Nezvizhskii AI, (2010) A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. Journal of Proteomics 73: 2092-2123.
-
(2010)
Journal of Proteomics
, vol.73
, pp. 2092-2123
-
-
Nezvizhskii, A.I.1
-
20
-
-
30744444934
-
PepHMM: A hidden Markov model based scoring function for mass spectrometry database search
-
Wan Y, Chen T, (2005) PepHMM: A hidden Markov model based scoring function for mass spectrometry database search. Anal Chem 78: 432-437.
-
(2005)
Anal Chem
, vol.78
, pp. 432-437
-
-
Wan, Y.1
Chen, T.2
-
21
-
-
46249088907
-
Modeling peptide fragmentation with dynamic Bayesian networks yields improved tandem mass spectrum identification
-
Klammer AA, Reynolds SR, Hoopmann M, MacCoss MJ, Bilmes J, et al. (2008) Modeling peptide fragmentation with dynamic Bayesian networks yields improved tandem mass spectrum identification. Bioinformatics 24: i348-i356.
-
(2008)
Bioinformatics
, vol.24
-
-
Klammer, A.A.1
Reynolds, S.R.2
Hoopmann, M.3
MacCoss, M.J.4
Bilmes, J.5
-
22
-
-
59149100438
-
Review of factors that inflence the abundance of ions produced in a tandem mass spectrometer and statistical methods for discovering these factors
-
Barton SJ, Whittaker JC, (2009) Review of factors that inflence the abundance of ions produced in a tandem mass spectrometer and statistical methods for discovering these factors. Mass Spectrom Rev 28: 177-187.
-
(2009)
Mass Spectrom Rev
, vol.28
, pp. 177-187
-
-
Barton, S.J.1
Whittaker, J.C.2
-
23
-
-
38649083118
-
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
-
Käll L, Storey JD, MacCoss MJ, Noble WS, (2008) Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. J Proteome Res 7: 29-34.
-
(2008)
J Proteome Res
, vol.7
, pp. 29-34
-
-
Käll, L.1
Storey, J.D.2
MacCoss, M.J.3
Noble, W.S.4
-
24
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias JE, Gygi SP, (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods 4: 207-214.
-
(2007)
Nat Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
25
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometrybased protein identification using general scoring schemes
-
Fenyo D, Beavis RC, (2003) A method for assessing the statistical significance of mass spectrometrybased protein identification using general scoring schemes. Anal Chem 75: 768-774.
-
(2003)
Anal Chem
, vol.75
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
26
-
-
65249097774
-
Statistical calibration of the sequest XCorr function
-
Klammer AA, Park CY, Noble WS, (2009) Statistical calibration of the sequest XCorr function. J Proteome Res 8: 2106-2113.
-
(2009)
J Proteome Res
, vol.8
, pp. 2106-2113
-
-
Klammer, A.A.1
Park, C.Y.2
Noble, W.S.3
-
27
-
-
79954507353
-
Assigning spectrum-specific p-values to protein identifications by mass spectrometry
-
Spirin V, Shpunt A, Seebacher J, Gentzel M, Shevchenko A, et al. (2011) Assigning spectrum-specific p-values to protein identifications by mass spectrometry. Bioinformatics 27: 1128-1134.
-
(2011)
Bioinformatics
, vol.27
, pp. 1128-1134
-
-
Spirin, V.1
Shpunt, A.2
Seebacher, J.3
Gentzel, M.4
Shevchenko, A.5
-
28
-
-
50149117169
-
Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases
-
Kim S, Gupta N, Pevzner PA, (2008) Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases. J Proteome Res 7: 3354-3363.
-
(2008)
J Proteome Res
, vol.7
, pp. 3354-3363
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
29
-
-
57649218838
-
Stable isotopic labeling in proteomics
-
Gevaert K, Impens F, Ghesquière B, Van Damme P, Lambrechts A, et al. (2008) Stable isotopic labeling in proteomics. Proteomics 8: 4873-4885.
-
(2008)
Proteomics
, vol.8
, pp. 4873-4885
-
-
Gevaert, K.1
Impens, F.2
Ghesquière, B.3
Van Damme, P.4
Lambrechts, A.5
-
30
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu P, Vogel C, Wang R, Yao X, Marcotte EM, (2006) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat Biotechnol 25: 117-124.
-
(2006)
Nat Biotechnol
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
31
-
-
74049132731
-
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
-
Griffin NM, Yu J, Long F, Oh P, Shore S, et al. (2010) Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis. Nat Biotechnol 28: 83-89.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 83-89
-
-
Griffin, N.M.1
Yu, J.2
Long, F.3
Oh, P.4
Shore, S.5
-
32
-
-
34247642450
-
Quantitative proteomic analysis of distinct mammalian mediator complexes using normalized spectral abundance factors
-
Paoletti AC, Parmely TJ, Tomomori-Sato C, Sato S, Zhu D, et al. (2006) Quantitative proteomic analysis of distinct mammalian mediator complexes using normalized spectral abundance factors. Proc Natl Acad Sci U S A 103: 18928-18933.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18928-18933
-
-
Paoletti, A.C.1
Parmely, T.J.2
Tomomori-Sato, C.3
Sato, S.4
Zhu, D.5
-
33
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old WM, Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, et al. (2005) Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol Cell Proteomics 4: 1487-1502.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
Mendoza, A.5
-
34
-
-
70449433751
-
Protein quantification in label-free LC-MS experiments
-
Clough T, Key M, Ott I, Ragg S, Schadow G, et al. (2009) Protein quantification in label-free LC-MS experiments. J Proteome Res 8: 5275-5284.
-
(2009)
J Proteome Res
, vol.8
, pp. 5275-5284
-
-
Clough, T.1
Key, M.2
Ott, I.3
Ragg, S.4
Schadow, G.5
-
35
-
-
68549137863
-
A statistical framework for protein quantitation in bottom-up MS-based proteomics
-
Karpievitch Y, Stanley J, Taverner T, Huang J, Adkins JN, et al. (2009) A statistical framework for protein quantitation in bottom-up MS-based proteomics. Bioinformatics 25: 2028-2034.
-
(2009)
Bioinformatics
, vol.25
, pp. 2028-2034
-
-
Karpievitch, Y.1
Stanley, J.2
Taverner, T.3
Huang, J.4
Adkins, J.N.5
-
36
-
-
0037106398
-
Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry
-
Bondarenko PV, Chelius D, Shaler TA, (2002) Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry. Anal Chem 74: 4741-4749.
-
(2002)
Anal Chem
, vol.74
, pp. 4741-4749
-
-
Bondarenko, P.V.1
Chelius, D.2
Shaler, T.A.3
-
37
-
-
34250366607
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling
-
Roy SM, Becker CH, (2007) Quantification of proteins and metabolites by mass spectrometry without isotopic labeling. Methods Mol Biol 359: 87-105.
-
(2007)
Methods Mol Biol
, vol.359
, pp. 87-105
-
-
Roy, S.M.1
Becker, C.H.2
-
38
-
-
31644446949
-
Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition
-
Silva JC, Gorenstein MV, Li GZ, Vissers JP, Geromanos SJ, (2006) Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition. Mol Cell Proteomics 5: 144-156.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.Z.3
Vissers, J.P.4
Geromanos, S.J.5
-
39
-
-
68449102172
-
Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
-
Malmstrom J, Beck M, Schmidt A, Lange V, Deutsch EW, et al. (2009) Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. Nature 460: 762-765.
-
(2009)
Nature
, vol.460
, pp. 762-765
-
-
Malmstrom, J.1
Beck, M.2
Schmidt, A.3
Lange, V.4
Deutsch, E.W.5
-
40
-
-
1842528125
-
Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards
-
Kuhn E, Wu J, Karl J, Liao H, Zolg W, et al. (2004) Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards. Proteomics 4: 1175-1186.
-
(2004)
Proteomics
, vol.4
, pp. 1175-1186
-
-
Kuhn, E.1
Wu, J.2
Karl, J.3
Liao, H.4
Zolg, W.5
-
41
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
Lange V, Picotti P, Domon B, Aebersold RH, (2008) Selected reaction monitoring for quantitative proteomics: a tutorial. Mol Syst Biol 4: 222.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.H.4
-
42
-
-
43049090085
-
Targeted quantitative analysis of streptococcus pyogenes virulence factors by multiple reaction monitoring
-
Lange V, Malmstrom JA, Didion J, King NL, Johansson BP, et al. (2008) Targeted quantitative analysis of streptococcus pyogenes virulence factors by multiple reaction monitoring. Mol Cell Proteomics 7: 1489-1500.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1489-1500
-
-
Lange, V.1
Malmstrom, J.A.2
Didion, J.3
King, N.L.4
Johansson, B.P.5
-
43
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
Mallick P, Schirle M, Chen SS, Flory MR, Lee H, et al. (2006) Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol 25: 125-131.
-
(2006)
Nat Biotechnol
, vol.25
, pp. 125-131
-
-
Mallick, P.1
Schirle, M.2
Chen, S.S.3
Flory, M.R.4
Lee, H.5
-
44
-
-
20544459800
-
Absolute quantification strategies in proteomics based on mass spectrometry
-
Bronstrup M, (2004) Absolute quantification strategies in proteomics based on mass spectrometry. Expert Reviews of Proteomics 1: 503-512.
-
(2004)
Expert Reviews of Proteomics
, vol.1
, pp. 503-512
-
-
Bronstrup, M.1
-
45
-
-
13444260275
-
The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick DS, Gerber SA, Gygi SP, (2005) The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods 35: 265-273.
-
(2005)
Methods
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
46
-
-
33747885134
-
A computational approach toward label-free protein quantification using predicted peptide detectability
-
Tang H, Arnold RJ, Alves P, Xun Z, Clemmer DE, et al. (2006) A computational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics 22: e481-e488.
-
(2006)
Bioinformatics
, vol.22
-
-
Tang, H.1
Arnold, R.J.2
Alves, P.3
Xun, Z.4
Clemmer, D.E.5
-
47
-
-
46349085804
-
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics
-
Webb-Robertson BJM, Cannon WR, Oehmen CS, Shah AR, G V, et al. (2008) A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinformatics 24: 1503-1509.
-
(2008)
Bioinformatics
, vol.24
, pp. 1503-1509
-
-
Webb-Robertson, B.J.M.1
Cannon, W.R.2
Oehmen, C.S.3
Shah A.R.G, V.4
-
48
-
-
21744435622
-
Scoring proteomes with proteotypic peptide probes
-
Kuster B, Schirle M, Mallick P, Aebersold RH, (2005) Scoring proteomes with proteotypic peptide probes. Nat Rev Mol Cell Biol 6: 577-583.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 577-583
-
-
Kuster, B.1
Schirle, M.2
Mallick, P.3
Aebersold, R.H.4
-
49
-
-
29244448703
-
Parts per million mass accuracy on an orbitrap mass spectrometer via lock mass injection into a C-trap
-
Olsen JV, de Godoy LMF, Li G, Macek B, Mortensen P, et al. (2005) Parts per million mass accuracy on an orbitrap mass spectrometer via lock mass injection into a C-trap. Mol Cell Proteomics 4: 2010-2021.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 2010-2021
-
-
Olsen, J.V.1
de Godoy, L.M.F.2
Li, G.3
Macek, B.4
Mortensen, P.5
-
50
-
-
6944233454
-
Ion activation methods for tandem mass spectrometry
-
Sleno L, Volmer DA, (2004) Ion activation methods for tandem mass spectrometry. J Mass Spectrom 39: 1091-1112.
-
(2004)
J Mass Spectrom
, vol.39
, pp. 1091-1112
-
-
Sleno, L.1
Volmer, D.A.2
-
51
-
-
56149086397
-
Decision tree-driven tandem mass spectrometry for shotgun proteomics
-
Swaney DL, McAlister GC, Coon JC, (2008) Decision tree-driven tandem mass spectrometry for shotgun proteomics. Nat Methods 5: 959-964.
-
(2008)
Nat Methods
, vol.5
, pp. 959-964
-
-
Swaney, D.L.1
McAlister, G.C.2
Coon, J.C.3
-
52
-
-
78650147228
-
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search
-
Kim S, Mischerikow N, Bandeira N, Navarro JD, Wich L, et al. (2010) The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search. Mol Cell Proteomics 9: 2840-2852.
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 2840-2852
-
-
Kim, S.1
Mischerikow, N.2
Bandeira, N.3
Navarro, J.D.4
Wich, L.5
-
53
-
-
14744293536
-
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra
-
Venable JD, Dong MQ, Wohlsclegel J, Dillin A, Yates JR III, (2004) Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nat Methods 1: 39-45.
-
(2004)
Nat Methods
, vol.1
, pp. 39-45
-
-
Venable, J.D.1
Dong, M.Q.2
Wohlsclegel, J.3
Dillin, A.4
Yates III, J.R.5
-
54
-
-
79954569537
-
Faster, quantitative, and accurate precursor acquisition independent from ion count
-
Panchaud A, Jung S, Shaffer SA, Aitchison JD, Goodlett DR, (2011) Faster, quantitative, and accurate precursor acquisition independent from ion count. Anal Chem 83: 2250-2257.
-
(2011)
Anal Chem
, vol.83
, pp. 2250-2257
-
-
Panchaud, A.1
Jung, S.2
Shaffer, S.A.3
Aitchison, J.D.4
Goodlett, D.R.5
|