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Volumn 9, Issue 10, 2010, Pages 5346-5357

Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data

Author keywords

Bayesian methods; degenerate peptides; protein identification; tandem mass spectrometry

Indexed keywords

PEPTIDE; PROTEIN;

EID: 77957339566     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100594k     Document Type: Article
Times cited : (96)

References (18)
  • 1
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A. I.; Keller, A.; Kolker, E.; Aebersold, R. A statistical model for identifying proteins by tandem mass spectrometry Anal. Chem. 2003, 75, 4646-4658
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 2
    • 21044459357 scopus 로고    scopus 로고
    • A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results
    • Weatherly, D. B.; Astwood, J. A., III; Minning, T. A.; Cavola, C.; Tarleton, R. L.; Orlando, R. A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results Mol. Cell. Proteomics 2005, 4 (6) 762-772
    • (2005) Mol. Cell. Proteomics , vol.4 , Issue.6 , pp. 762-772
    • Weatherly, D.B.1    Astwood Iii, J.A.2    Minning, T.A.3    Cavola, C.4    Tarleton, R.L.5    Orlando, R.6
  • 3
    • 14844360847 scopus 로고    scopus 로고
    • Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and sequest analysis: The human proteome
    • Qian, W. J.; Liu, T.; Monroe, M. E.; Strittmatter, E. F.; Jacobs, J. M.; Kangas, L. J.; Petritis, K.; Camp, D. G., II; Smith, R. D. Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and sequest analysis: The human proteome J. Proteome Res. 2005, 4 (1) 53-62
    • (2005) J. Proteome Res. , vol.4 , Issue.1 , pp. 53-62
    • Qian, W.J.1    Liu, T.2    Monroe, M.E.3    Strittmatter, E.F.4    Jacobs, J.M.5    Kangas, L.J.6    Petritis, K.7    Camp, D.G.I.I.8    Smith, R.D.9
  • 6
    • 77955459838 scopus 로고    scopus 로고
    • A nested mixture model for protein identification using mass spectrometry
    • Li, Q.; MacCoss, M. J.; Stephens, M. A nested mixture model for protein identification using mass spectrometry Ann. Appl. Sci. 2010, 4 (2) 962-987
    • (2010) Ann. Appl. Sci. , vol.4 , Issue.2 , pp. 962-987
    • Li, Q.1    MacCoss, M.J.2    Stephens, M.3
  • 7
    • 34249047337 scopus 로고    scopus 로고
    • Probability model for assessing proteins assembled from peptide sequences inferred from tandem mass spectrometry data
    • Feng, J.; Naiman, D. Q.; Cooper, B. Probability model for assessing proteins assembled from peptide sequences inferred from tandem mass spectrometry data Anal. Chem. 2007, 79, 3901-3911
    • (2007) Anal. Chem. , vol.79 , pp. 3901-3911
    • Feng, J.1    Naiman, D.Q.2    Cooper, B.3
  • 8
    • 34948874252 scopus 로고    scopus 로고
    • Proteomic parsimony through bipartite graph analysis improves accuracy and transparency
    • Zhang, B.; Chambers, M. C.; Tabb, D. L. Proteomic parsimony through bipartite graph analysis improves accuracy and transparency J. Proteome Res. 2007, 6 (9) 3549-3557
    • (2007) J. Proteome Res. , vol.6 , Issue.9 , pp. 3549-3557
    • Zhang, B.1    Chambers, M.C.2    Tabb, D.L.3
  • 11
    • 35748972060 scopus 로고    scopus 로고
    • A semi-supervised machine learning technique for peptide identification from shotgun proteomics datasets
    • Käll, L.; Canterbury, J.; Weston, J.; Noble, W. S.; MacCoss, M. J. A semi-supervised machine learning technique for peptide identification from shotgun proteomics datasets Nat. Methods 2007, 4, 923-25
    • (2007) Nat. Methods , vol.4 , pp. 923-25
    • Käll, L.1    Canterbury, J.2    Weston, J.3    Noble, W.S.4    MacCoss, M.J.5
  • 13
    • 65249121948 scopus 로고    scopus 로고
    • Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures
    • Hoopmann, M. R.; Merrihew, G. E.; vonHaller, P. D.; MacCoss, M. J. Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures J. Proteome Res. 2009, 8 (4) 1870-1875
    • (2009) J. Proteome Res. , vol.8 , Issue.4 , pp. 1870-1875
    • Hoopmann, M.R.1    Merrihew, G.E.2    Vonhaller, P.D.3    MacCoss, M.J.4
  • 14
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K.; McCormack, A. L.; Yates, J. R., III. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 1994, 5, 976-989
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates Iii, J.R.3
  • 15
    • 46249114017 scopus 로고    scopus 로고
    • Rapid and accurate peptide identification from tandem mass spectra
    • Park, C. Y.; Klammer, A. A.; Käll, L.; MacCoss, M. P.; Noble, W. S. Rapid and accurate peptide identification from tandem mass spectra J. Proteome Res. 2008, 7 (7) 3022-3027
    • (2008) J. Proteome Res. , vol.7 , Issue.7 , pp. 3022-3027
    • Park, C.Y.1    Klammer, A.A.2    Käll, L.3    MacCoss, M.P.4    Noble, W.S.5
  • 16
    • 33847401893 scopus 로고    scopus 로고
    • Myrimatch: Highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
    • Tabb, D. L.; Fernando, C. G.; Chambers, M. C. Myrimatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis J. Proteome Res. 2007, 6, 654-661
    • (2007) J. Proteome Res. , vol.6 , pp. 654-661
    • Tabb, D.L.1    Fernando, C.G.2    Chambers, M.C.3
  • 17
    • 35848929694 scopus 로고    scopus 로고
    • Analysis and validation of proteomic data generated by tandem mass spectrometry
    • Nesvizhskii, A. I.; Vitek, O.; Aebersold, R. Analysis and validation of proteomic data generated by tandem mass spectrometry Nat. Methods 2007, 4 (10) 787-797
    • (2007) Nat. Methods , vol.4 , Issue.10 , pp. 787-797
    • Nesvizhskii, A.I.1    Vitek, O.2    Aebersold, R.3
  • 18
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identification made by MS/MS and database search
    • Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identification made by MS/MS and database search Anal. Chem. 2002, 74, 5383-5392
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.