-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., Mann, M.: Mass spectrometry-based proteomics. Nature 422, 198-207 (2003)
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
0141502007
-
Shotgun proteomics: Integrating technologies to answer biological questions
-
McDonald, W.H., Yates, J.R.: Shotgun proteomics: integrating technologies to answer biological questions. Curr. Opin. Mol. Ther. 5(3), 302-309 (2003)
-
(2003)
Curr. Opin. Mol. Ther
, vol.5
, Issue.3
, pp. 302-309
-
-
McDonald, W.H.1
Yates, J.R.2
-
3
-
-
14344260140
-
-
Kislinger, T., Emili, A.: Multidimensional protein identification technology: current status and future prospects. Expert Rev. Proteomics 2(1), 27-39 (2005)
-
Kislinger, T., Emili, A.: Multidimensional protein identification technology: current status and future prospects. Expert Rev. Proteomics 2(1), 27-39 (2005)
-
-
-
-
4
-
-
19444370729
-
The continuing evolution of shotgun proteomics
-
Swanson, S.K., Washburn, M.P.: The continuing evolution of shotgun proteomics. Drug Discov. Today 10(10), 719-725 (2005)
-
(2005)
Drug Discov. Today
, vol.10
, Issue.10
, pp. 719-725
-
-
Swanson, S.K.1
Washburn, M.P.2
-
5
-
-
34447313945
-
How do shotgun proteomics algorithms identify proteins?
-
Marcotte, E.M.: How do shotgun proteomics algorithms identify proteins?. Nat. Biotechnol. 25(7), 755-757 (2007)
-
(2007)
Nat. Biotechnol
, vol.25
, Issue.7
, pp. 755-757
-
-
Marcotte, E.M.1
-
6
-
-
39049175370
-
Protein identification by tandem mass spectrometry and sequence database searching
-
Nesvizhskii, A.I.: Protein identification by tandem mass spectrometry and sequence database searching. Methods Mol Biol 367, 87-119 (2007)
-
(2007)
Methods Mol Biol
, vol.367
, pp. 87-119
-
-
Nesvizhskii, A.I.1
-
7
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates, J.R., Eng, J.K., McCormack, A.L., Schieltz, D.: Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal Chem 67, 1426-1436 (1995)
-
(1995)
Anal Chem
, vol.67
, pp. 1426-1436
-
-
Yates, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
8
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M., Cottrell, J.S.: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20(18), 3551-3567 (1999)
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
9
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig, R., Beavis, R.C.: TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20(9), 1466-1467 (2004)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
10
-
-
27644555055
-
Interpretation of shotgun proteomic data: The protein inference problem
-
Nesvizhskii, A.I., Aebersold, R.: Interpretation of shotgun proteomic data: the protein inference problem. Mol Cell Proteomics 4(10), 1419-1440 (2005)
-
(2005)
Mol Cell Proteomics
, vol.4
, Issue.10
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
11
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A.I., Keller, A., Kolker, E., Aebersold, R.: A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75(17), 4646-4658 (2003)
-
(2003)
Anal Chem
, vol.75
, Issue.17
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
12
-
-
37549023558
-
Advancement in protein inference from shotgun proteomics using peptide detectability
-
World Scientific, Singapore
-
Alves, P., Arnold, R.J., Novotny, M.V., Radivojac, P., Reilly, J.P., Tang, H.: Advancement in protein inference from shotgun proteomics using peptide detectability. In: PSB 2007: Pacific Symposium on Biocomputing, pp. 409-420. World Scientific, Singapore (2007)
-
(2007)
PSB 2007: Pacific Symposium on Biocomputing
, pp. 409-420
-
-
Alves, P.1
Arnold, R.J.2
Novotny, M.V.3
Radivojac, P.4
Reilly, J.P.5
Tang, H.6
-
13
-
-
34948874252
-
Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency
-
Zhang, B., Chambers, M.C., Tabb, D.L.: Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency. J Proteome Res. 6(9), 3549-3557 (2007)
-
(2007)
J Proteome Res
, vol.6
, Issue.9
, pp. 3549-3557
-
-
Zhang, B.1
Chambers, M.C.2
Tabb, D.L.3
-
14
-
-
33747885134
-
A computational approach toward label-free protein quantification using predicted peptide detectability
-
Tang, H., Arnold, R.J., Alves, P., Xun, Z., Clemmer, D.E., Novotny, M.V., Reilly, J.P., Radivojac, P.: A computational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics 22(14), 481-488 (2006)
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 481-488
-
-
Tang, H.1
Arnold, R.J.2
Alves, P.3
Xun, Z.4
Clemmer, D.E.5
Novotny, M.V.6
Reilly, J.P.7
Radivojac, P.8
-
15
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P., Vogel, C., Wang, R., Yao, X., Marcotte, E.M.: Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 25(1), 117-124 (2007)
-
(2007)
Nat. Biotechnol
, vol.25
, Issue.1
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
16
-
-
24044513966
-
-
Elias, J.E., Haas, W., Faherty, B.K., Gygi, S.P.: Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat. Methods 2(9), 667-675 (2005)(Comparative Study)
-
Elias, J.E., Haas, W., Faherty, B.K., Gygi, S.P.: Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat. Methods 2(9), 667-675 (2005)(Comparative Study)
-
-
-
-
17
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Evaluation Studies
-
Elias, J.E., Gygi, S.P.: Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4(3), 207-214 (2007) (Evaluation Studies)
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
18
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A., Nesvizhskii, A.I., Kolker, E., Aebersold, R.: Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 74(20), 5383-5392 (2002)
-
(2002)
Anal Chem
, vol.74
, Issue.20
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
19
-
-
33645881086
-
RT-PSM, a real-time program for peptide-spectrum matching with statistical significance
-
Wu, F.-X., Gagne, P., Droit, A., Poirier, G.G.: RT-PSM, a real-time program for peptide-spectrum matching with statistical significance. Rapid Commun Mass Spectrom 20(8), 1199-1208 (2006)
-
(2006)
Rapid Commun Mass Spectrom
, vol.20
, Issue.8
, pp. 1199-1208
-
-
Wu, F.-X.1
Gagne, P.2
Droit, A.3
Poirier, G.G.4
-
20
-
-
34547459495
-
-
Bern, M., Goldberg, D.: Improved ranking functions for protein and modificationsite identifications. In: Speed, T., Huang, H. (eds.) RECOMB 2007. LNCS (LNBI), 4453, pp. 444-458. Springer, Heidelberg (2007)
-
Bern, M., Goldberg, D.: Improved ranking functions for protein and modificationsite identifications. In: Speed, T., Huang, H. (eds.) RECOMB 2007. LNCS (LNBI), vol. 4453, pp. 444-458. Springer, Heidelberg (2007)
-
-
-
-
21
-
-
0021518209
-
Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images
-
Geman, S., Geman, D.: Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. on Pattern Analysis and Machine Intelligence 6, 721-741 (1984)
-
(1984)
IEEE Trans. on Pattern Analysis and Machine Intelligence
, vol.6
, pp. 721-741
-
-
Geman, S.1
Geman, D.2
-
23
-
-
34249717879
-
A high-quality catalog of the Drosophila melanogaster proteome
-
Brunner, E., Ahrens, C.H., Mohanty, S., Baetschmann, H., Loevenich, S., Potthast, F., Deutsch, E.W., Panse, C., de Lichtenberg, U., Rinner, O., Lee, H., Pedrioli, P.G.A., Malmstrom, J., Koehler, K., Schrimpf, S., Krijgsveld, J., Kregenow, F., Heck, A.J.R., Hafen, E., Schlapbach, R., Aebersold, R.: A high-quality catalog of the Drosophila melanogaster proteome. Nat Biotechnol. 25(5), 576-583 (2007)
-
(2007)
Nat Biotechnol
, vol.25
, Issue.5
, pp. 576-583
-
-
Brunner, E.1
Ahrens, C.H.2
Mohanty, S.3
Baetschmann, H.4
Loevenich, S.5
Potthast, F.6
Deutsch, E.W.7
Panse, C.8
de Lichtenberg, U.9
Rinner, O.10
Lee, H.11
Pedrioli, P.G.A.12
Malmstrom, J.13
Koehler, K.14
Schrimpf, S.15
Krijgsveld, J.16
Kregenow, F.17
Heck, A.J.R.18
Hafen, E.19
Schlapbach, R.20
Aebersold, R.21
more..
|