-
1
-
-
0036604957
-
Designing robust optimal dynamic experiments
-
Asprey, S. P., & Macchietto, S. (2002). Designing robust optimal dynamic experiments,. J. Process Control, 12, 545-556.
-
(2002)
J. Process Control
, vol.12
, pp. 545-556
-
-
Asprey, S.P.1
Macchietto, S.2
-
2
-
-
0011381823
-
One hundred years of the design of experiments on and off the pages of biometrika
-
Atkinson, A. C., & Bailey, R. A. (2001). One hundred years of the design of experiments on and off the pages of biometrika. Biometrika, 88, 53-97.
-
(2001)
Biometrika
, vol.88
, pp. 53-97
-
-
Atkinson, A.C.1
Bailey, R.A.2
-
3
-
-
48749095711
-
Computational procedures for optimal experimental design in biological systems
-
Balsa-Canto, E., Alonso, A. A., & Banga, J. R. (2008). Computational procedures for optimal experimental design in biological systems. IET Syst. Biol., 2, 163-172.
-
(2008)
IET Syst. Biol.
, vol.2
, pp. 163-172
-
-
Balsa-Canto, E.1
Alonso, A.A.2
Banga, J.R.3
-
4
-
-
77949475400
-
An iterative identification procedure for dynamic modeling of biochemical networks
-
Balsa-Canto, E., Alonso, A. A., & Banga, J. R. (2010). An iterative identification procedure for dynamic modeling of biochemical networks. BMC Syst. Biol., 4.
-
(2010)
BMC Syst. Biol
, pp. 4
-
-
Balsa-Canto, E.1
Alonso, A.A.2
Banga, J.R.3
-
5
-
-
73449142148
-
Optimal experimental design for parameter estimation of a cell signaling model
-
Bandara, S., Schloder, J. P., Eils, R., Bock, H. G., & Meyer, T. (2009). Optimal experimental design for parameter estimation of a cell signaling model. PLoS Comput. Biol., 5, e1000558.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Bandara, S.1
Schloder, J.P.2
Eils, R.3
Bock, H.G.4
Meyer, T.5
-
7
-
-
0032096929
-
Inverse problems and parameter estimation: integration of measurements and analysis
-
Beck, J. V., & Woodbury, K. A. (1998). Inverse problems and parameter estimation: integration of measurements and analysis. Meas. Sci. Technol., 9, 839-847.
-
(1998)
Meas. Sci. Technol.
, vol.9
, pp. 839-847
-
-
Beck, J.V.1
Woodbury, K.A.2
-
8
-
-
84954975157
-
Fisher, R.A. and the design of experiments, 1922-1926
-
Box, J. F. (1980). Fisher, R. A. and the design of experiments, 1922-1926. Am. Stat., 34, 1-7.
-
(1980)
Am. Stat.
, vol.34
, pp. 1-7
-
-
Box, J.F.1
-
9
-
-
0002928751
-
Discrimination among mechanistic models
-
Box, G. E. P., & Hill, W. J. (1967). Discrimination among mechanistic models. Technometrics, 9, 57-71.
-
(1967)
Technometrics
, vol.9
, pp. 57-71
-
-
Box, G.E.P.1
Hill, W.J.2
-
11
-
-
79551509009
-
Variance-based global sensitivity analysis via sparge-grid interpolation and cubature
-
Buzzard, G. T., & Xiu, D. B. (2011). Variance-based global sensitivity analysis via sparge-grid interpolation and cubature. Commun. Comput. Phys., 9, 542-567.
-
(2011)
Commun. Comput. Phys.
, vol.9
, pp. 542-567
-
-
Buzzard, G.T.1
Xiu, D.B.2
-
13
-
-
0041846841
-
On the design of optimally informative dynamic experiments for model discrimination in multiresponse nonlinear situations
-
Chen, B. H., & Asprey, S. P. (2003). On the design of optimally informative dynamic experiments for model discrimination in multiresponse nonlinear situations. Ind. Eng. Chem. Res., 42, 1379-1390.
-
(2003)
Ind. Eng. Chem. Res.
, vol.42
, pp. 1379-1390
-
-
Chen, B.H.1
Asprey, S.P.2
-
14
-
-
1342265607
-
Experimental design in systems biology, based on parameter sensitivity analysis using a Monte Carlo method: a case study for the Tnf alpha-mediated Nf-kappa B signal transduction pathway
-
Cho, K. H., Shin, S. Y., Kolch, W., & Wolkenhauer, O. (2003). Experimental design in systems biology, based on parameter sensitivity analysis using a Monte Carlo method: a case study for the Tnf alpha-mediated Nf-kappa B signal transduction pathway. Simulation, 79, 726-739.
-
(2003)
Simulation
, vol.79
, pp. 726-739
-
-
Cho, K.H.1
Shin, S.Y.2
Kolch, W.3
Wolkenhauer, O.4
-
15
-
-
52649139002
-
Integrating parameter selection with experimental design under uncertainty for nonlinear dynamic systems
-
Chu, Y. F., & Hahn, J. (2008). Integrating parameter selection with experimental design under uncertainty for nonlinear dynamic systems. AIChE J., 54, 2310-2320.
-
(2008)
AIChE J.
, vol.54
, pp. 2310-2320
-
-
Chu, Y.F.1
Hahn, J.2
-
16
-
-
77956083795
-
Quantitative optimal experimental design using global sensitivity analysis via quasi-linearization
-
Chu, Y. F., & Hahn, J. (2010). Quantitative optimal experimental design using global sensitivity analysis via quasi-linearization. Ind. Eng. Chem. Res., 49, 7782-7794.
-
(2010)
Ind. Eng. Chem. Res.
, vol.49
, pp. 7782-7794
-
-
Chu, Y.F.1
Hahn, J.2
-
17
-
-
77954987002
-
Experiment design through dynamical characterisation of non-linear systems biology models utilising sparse grids
-
Donahue, M. M., Buzzard, G. T., & Rundell, A. E. (2010). Experiment design through dynamical characterisation of non-linear systems biology models utilising sparse grids. IET Syst. Biol., 4, 249-262.
-
(2010)
IET Syst. Biol.
, vol.4
, pp. 249-262
-
-
Donahue, M.M.1
Buzzard, G.T.2
Rundell, A.E.3
-
18
-
-
57649176902
-
An anticipatory approach to optimal experimental design for model discrimination
-
Donckels, B. M. R., De Pauw, D. J. W., De Baets, B., Maertens, J., & Vanrolleghem, P. A. (2009). An anticipatory approach to optimal experimental design for model discrimination. Chemom. Intell. Lab. Syst., 95, 53-63.
-
(2009)
Chemom. Intell. Lab. Syst.
, vol.95
, pp. 53-63
-
-
Donckels, B.M.R.1
de Pauw, D.J.W.2
de Baets, B.3
Maertens, J.4
Vanrolleghem, P.A.5
-
19
-
-
0033925149
-
Uncertainties in parameter estimation: the optimal experiment design
-
Emery, A. F., Nenarokomov, A. V., & Fadale, T. D. (2000). Uncertainties in parameter estimation: the optimal experiment design. Int. J. Heat Mass Transf., 43, 3331-3339.
-
(2000)
Int. J. Heat Mass Transf.
, vol.43
, pp. 3331-3339
-
-
Emery, A.F.1
Nenarokomov, A.V.2
Fadale, T.D.3
-
20
-
-
0024607513
-
The optimal-design of dynamic experiments
-
Espie, D., & Macchietto, S. (1989). The optimal-design of dynamic experiments. AIChE J., 35, 223-229.
-
(1989)
AIChE J.
, vol.35
, pp. 223-229
-
-
Espie, D.1
Macchietto, S.2
-
21
-
-
0021160956
-
Sequential experimental-design for model discrimination in the case of multiple responses
-
Ferraris, G. B., Forzatti, P., Emig, G., & Hofmann, H. (1984). Sequential experimental-design for model discrimination in the case of multiple responses. Chem. Eng. Sci., 39, 81-85.
-
(1984)
Chem. Eng. Sci.
, vol.39
, pp. 81-85
-
-
Ferraris, G.B.1
Forzatti, P.2
Emig, G.3
Hofmann, H.4
-
23
-
-
33846687238
-
Validation of a model for biodiesel production through model-based experiment design
-
Franceschini, G., & Macchietto, S. (2007). Validation of a model for biodiesel production through model-based experiment design. Ind. Eng. Chem. Res., 46, 220-232.
-
(2007)
Ind. Eng. Chem. Res.
, vol.46
, pp. 220-232
-
-
Franceschini, G.1
Macchietto, S.2
-
24
-
-
52149085229
-
Model-based design of experiments for parameter precision: state of the art
-
Franceschini, G., & Macchietto, S. (2008a). Model-based design of experiments for parameter precision: state of the art. Chem. Eng. Sci., 63, 4846-4872.
-
(2008)
Chem. Eng. Sci.
, vol.63
, pp. 4846-4872
-
-
Franceschini, G.1
Macchietto, S.2
-
25
-
-
42149120000
-
Anti-correlation approach to model-based experiment design: application to a biodiesel production process
-
Franceschini, G., & Macchietto, S. (2008b). Anti-correlation approach to model-based experiment design: application to a biodiesel production process. Ind. Eng. Chem. Res., 47, 2331-2348.
-
(2008)
Ind. Eng. Chem. Res.
, vol.47
, pp. 2331-2348
-
-
Franceschini, G.1
Macchietto, S.2
-
26
-
-
42149131484
-
Novel anticorrelation criteria for model-based experiment design: theory and formulations
-
Franceschini, G., & Macchietto, S. (2008c). Novel anticorrelation criteria for model-based experiment design: theory and formulations. AIChE J., 54, 1009-1024.
-
(2008)
AIChE J.
, vol.54
, pp. 1009-1024
-
-
Franceschini, G.1
Macchietto, S.2
-
27
-
-
25444510601
-
Iterative approach to model identification of biological networks
-
Gadkar, K. G., Gunawan, R., & Doyle, F. J. (2005). Iterative approach to model identification of biological networks. BMC Bioinf., 6.
-
(2005)
BMC Bioinf
, pp. 6
-
-
Gadkar, K.G.1
Gunawan, R.2
Doyle, F.J.3
-
28
-
-
33847321052
-
Model-based design of parallel experiments
-
Galvanin, F., Macchietto, S., & Bezzo, F. (2007). Model-based design of parallel experiments. Ind. Eng. Chem. Res., 46, 871-882.
-
(2007)
Ind. Eng. Chem. Res.
, vol.46
, pp. 871-882
-
-
Galvanin, F.1
Macchietto, S.2
Bezzo, F.3
-
29
-
-
0141991028
-
Dimension-adaptive tensor-product quadrature
-
Gerstner, T., & Griebel, M. (2003). Dimension-adaptive tensor-product quadrature. Computing, 71, 65-87.
-
(2003)
Computing
, vol.71
, pp. 65-87
-
-
Gerstner, T.1
Griebel, M.2
-
30
-
-
0346972982
-
Simulation and optimization approaches to scenario tree generation
-
Gulpinar, N., Rustem, B., & Settergren, R. (2004). Simulation and optimization approaches to scenario tree generation. J. Econ. Dyn. Control, 28, 1291-1315.
-
(2004)
J. Econ. Dyn. Control
, vol.28
, pp. 1291-1315
-
-
Gulpinar, N.1
Rustem, B.2
Settergren, R.3
-
31
-
-
35748977901
-
Universally sloppy parameter sensitivities in systems biology models
-
Gutenkunst, R. N., et al. (2007). Universally sloppy parameter sensitivities in systems biology models. PLoS Comput. Biol., 3, 1871-1878.
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 1871-1878
-
-
Gutenkunst, R.N.1
-
32
-
-
77953017679
-
Maximin and Bayesian robust experimental design for measurement set selection in modelling biochemical regulatory systems
-
He, F., Brown, M., & Yue, H. (2010). Maximin and Bayesian robust experimental design for measurement set selection in modelling biochemical regulatory systems. Int. J. Robust Nonlinear Control, 20, 1059-1078.
-
(2010)
Int. J. Robust Nonlinear Control
, vol.20
, pp. 1059-1078
-
-
He, F.1
Brown, M.2
Yue, H.3
-
33
-
-
0035261934
-
Generating scenario trees for multistage decision problems
-
Hoyland, K., & Wallace, S. W. (2001). Generating scenario trees for multistage decision problems. Manag. Sci., 47, 295-307.
-
(2001)
Manag. Sci.
, vol.47
, pp. 295-307
-
-
Hoyland, K.1
Wallace, S.W.2
-
34
-
-
33748057502
-
Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems
-
Joshi, M., Seidel-Morgenstern, A., & Kremling, A. (2006). Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems. Metab. Eng., 8, 447-455.
-
(2006)
Metab. Eng.
, vol.8
, pp. 447-455
-
-
Joshi, M.1
Seidel-Morgenstern, A.2
Kremling, A.3
-
35
-
-
33745213726
-
Algorithm 847: {Spinterp}: piecewise multilinear hierarchical sparse grid interpolation in {Matlab}
-
Klimke, A., & Wohlmuth, B. (2005). Algorithm 847: {Spinterp}: piecewise multilinear hierarchical sparse grid interpolation in {Matlab}. ACM Trans. Math. Softw., 31.
-
(2005)
ACM Trans. Math. Softw
, pp. 31
-
-
Klimke, A.1
Wohlmuth, B.2
-
36
-
-
4644301730
-
A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions
-
Kremling, A., et al. (2004). A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions. Genome Res., 14, 1773-1785.
-
(2004)
Genome Res.
, vol.14
, pp. 1773-1785
-
-
Kremling, A.1
-
37
-
-
58849137994
-
Systems biology: experimental design
-
Kreutz, C., & Timmer, J. (2009). Systems biology: experimental design. FEBS J., 276, 923-942.
-
(2009)
FEBS J.
, vol.276
, pp. 923-942
-
-
Kreutz, C.1
Timmer, J.2
-
38
-
-
35748945147
-
An error model for protein quantification
-
Kreutz, C., et al. (2007). An error model for protein quantification. Bioinformatics, 23, 2747-2753.
-
(2007)
Bioinformatics
, vol.23
, pp. 2747-2753
-
-
Kreutz, C.1
-
39
-
-
3042702377
-
Optimal sampling time selection for parameter estimation in dynamic pathway modeling
-
Kutalik, Z., Cho, K. H., & Wolkenhauer, O. (2004). Optimal sampling time selection for parameter estimation in dynamic pathway modeling. Biosystems, 75, 43-55.
-
(2004)
Biosystems
, vol.75
, pp. 43-55
-
-
Kutalik, Z.1
Cho, K.H.2
Wolkenhauer, O.3
-
40
-
-
77950841799
-
Parameter estimation and model selection in computational biology
-
Lillacci, G., & Khammash, M. (2010). Parameter estimation and model selection in computational biology. PLoS Comput. Biol., 6, e1000696.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Lillacci, G.1
Khammash, M.2
-
41
-
-
49049088099
-
Stochastic effects and bistability in T cell receptor signaling
-
Lipniacki, T., Hat, B., Faeder, J. R., & Hlavacek, W. S. (2008). Stochastic effects and bistability in T cell receptor signaling. J. Theor. Biol., 254, 110-122.
-
(2008)
J. Theor. Biol.
, vol.254
, pp. 110-122
-
-
Lipniacki, T.1
Hat, B.2
Faeder, J.R.3
Hlavacek, W.S.4
-
42
-
-
0025636328
-
Fisher, R.A. and experimental-design-a review
-
Preece, D. A. (1990). Fisher, R. A. and experimental-design-a review. Biometrics, 46, 925-935.
-
(1990)
Biometrics
, vol.46
, pp. 925-935
-
-
Preece, D.A.1
-
43
-
-
0016028302
-
Potential pitfalls in model discrimination
-
Pritchard, D. J., & Bacon, D. W. (1974). Potential pitfalls in model discrimination. Can. J. Chem. Eng., 52, 103-109.
-
(1974)
Can. J. Chem. Eng.
, vol.52
, pp. 103-109
-
-
Pritchard, D.J.1
Bacon, D.W.2
-
44
-
-
0018109827
-
Prospects for reducing correlations among parameter estimates in kinetic-models
-
Pritchard, D. J., & Bacon, D. W. (1978). Prospects for reducing correlations among parameter estimates in kinetic-models. Chem. Eng. Sci., 33, 1539-1543.
-
(1978)
Chem. Eng. Sci.
, vol.33
, pp. 1539-1543
-
-
Pritchard, D.J.1
Bacon, D.W.2
-
45
-
-
37849021822
-
Optimal experimental design and some related control problems
-
Pronzato, L. (2008). Optimal experimental design and some related control problems. Automatica, 44, 303-325.
-
(2008)
Automatica
, vol.44
, pp. 303-325
-
-
Pronzato, L.1
-
46
-
-
0028549449
-
Minimum-volume ellipsoids containing compact-sets-application to parameter bounding
-
Pronzato, L., & Walter, E. (1994). Minimum-volume ellipsoids containing compact-sets-application to parameter bounding. Automatica, 30, 1731-1739.
-
(1994)
Automatica
, vol.30
, pp. 1731-1739
-
-
Pronzato, L.1
Walter, E.2
-
47
-
-
32044474451
-
A hybrid approach for efficient and robust parameter estimation in biochemical pathways
-
Rodriguez-Fernandez, M., Mendes, P., & Banga, J. R. (2006). A hybrid approach for efficient and robust parameter estimation in biochemical pathways. Biosystems, 83, 248-265.
-
(2006)
Biosystems
, vol.83
, pp. 248-265
-
-
Rodriguez-Fernandez, M.1
Mendes, P.2
Banga, J.R.3
-
48
-
-
77951652580
-
Simultaneous versus sequential optimal experiment design for the identification of multi-parameter microbial growth kinetics as a function of temperature
-
van Derlinden, E., Bernaerts, K., & van Impe, J. F. (2010). Simultaneous versus sequential optimal experiment design for the identification of multi-parameter microbial growth kinetics as a function of temperature. J. Theor. Biol., 264, 347-355.
-
(2010)
J. Theor. Biol.
, vol.264
, pp. 347-355
-
-
van Derlinden, E.1
Bernaerts, K.2
van Impe, J.F.3
-
49
-
-
32944459689
-
Experiment selection for the discrimination of semi-quantitative models of dynamical systems
-
Vatcheva, I., de Jong, H., Bernard, O., & Mars, N. J. I. (2006). Experiment selection for the discrimination of semi-quantitative models of dynamical systems. Artif. Intell., 170, 472-506.
-
(2006)
Artif. Intell.
, vol.170
, pp. 472-506
-
-
Vatcheva, I.1
de Jong, H.2
Bernard, O.3
Mars, N.J.I.4
-
50
-
-
0033238446
-
Recent advances in multiple-objective design strategies
-
Wong, W. K. (1999). Recent advances in multiple-objective design strategies. Stat. Neerl., 53, 257-276.
-
(1999)
Stat. Neerl.
, vol.53
, pp. 257-276
-
-
Wong, W.K.1
|