-
1
-
-
0029852580
-
Use of a cDNA microarray to analyse gene expression patterns in human cancer
-
DeRisi J., Penland L., Brown P.O., Bittner M.L., Meltzer P.S., Ray M., Chen Y., Su Y.A., Trent J.M. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat. Genet. 1996, 14:457-460.
-
(1996)
Nat. Genet.
, vol.14
, pp. 457-460
-
-
DeRisi, J.1
Penland, L.2
Brown, P.O.3
Bittner, M.L.4
Meltzer, P.S.5
Ray, M.6
Chen, Y.7
Su, Y.A.8
Trent, J.M.9
-
2
-
-
77951983711
-
Significance of light, sugar, and amino acid supply for diurnal gene regulation in developing barley caryopses
-
Mangelsen E., Wanke D., Kilian J., Sundberg E., Harter K., Jansson C. Significance of light, sugar, and amino acid supply for diurnal gene regulation in developing barley caryopses. Plant Physiol. 2010, 153:14-33.
-
(2010)
Plant Physiol.
, vol.153
, pp. 14-33
-
-
Mangelsen, E.1
Wanke, D.2
Kilian, J.3
Sundberg, E.4
Harter, K.5
Jansson, C.6
-
3
-
-
6444224651
-
Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome
-
Schrader J., Moyle R., Bhalerao R., Hertzberg M., Lundeberg J., Nilsson P., Bhalerao R.P. Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. Plant J. 2004, 40:173-187.
-
(2004)
Plant J.
, vol.40
, pp. 173-187
-
-
Schrader, J.1
Moyle, R.2
Bhalerao, R.3
Hertzberg, M.4
Lundeberg, J.5
Nilsson, P.6
Bhalerao, R.P.7
-
4
-
-
1842619264
-
A transcriptional timetable of autumn senescence
-
Andersson A., Keskitalo J., Sjodin A., Bhalerao R., Sterky F., Wissel K., Tandre K., Aspeborg H., Moyle R., Ohmiya Y., Brunner A., Gustafsson P., Karlsson J., Lundeberg J., Nilsson O., Sandberg G., Strauss S., Sundberg B., Uhlen M., Jansson S., Nilsson P. A transcriptional timetable of autumn senescence. Genome Biol. 2004, 5:R24.
-
(2004)
Genome Biol.
, vol.5
-
-
Andersson, A.1
Keskitalo, J.2
Sjodin, A.3
Bhalerao, R.4
Sterky, F.5
Wissel, K.6
Tandre, K.7
Aspeborg, H.8
Moyle, R.9
Ohmiya, Y.10
Brunner, A.11
Gustafsson, P.12
Karlsson, J.13
Lundeberg, J.14
Nilsson, O.15
Sandberg, G.16
Strauss, S.17
Sundberg, B.18
Uhlen, M.19
Jansson, S.20
Nilsson, P.21
more..
-
5
-
-
1842458417
-
Transcript identification and profiling during salt stress and recovery of Populus euphratica
-
Gu R., Fonseca S., Puskas L.G., Hackler L., Zvara A., Dudits D., Pais M.S. Transcript identification and profiling during salt stress and recovery of Populus euphratica. Tree Physiol. 2004, 24:265-276.
-
(2004)
Tree Physiol.
, vol.24
, pp. 265-276
-
-
Gu, R.1
Fonseca, S.2
Puskas, L.G.3
Hackler, L.4
Zvara, A.5
Dudits, D.6
Pais, M.S.7
-
6
-
-
0036010572
-
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses
-
Chen W., Provart N.J., Glazebrook J., Katagiri F., Chang H.S., Eulgem T., Mauch F., Luan S., Zou G., Whitham S.A., Budworth P.R., Tao Y., Xie Z., Chen X., Lam S., Kreps J.A., Harper J.F., Si-Ammour A., Mauch-Mani B., Heinlein M., Kobayashi K., Hohn T., Dangl J.L., Wang X., Zhu T. Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 2002, 14:559-574.
-
(2002)
Plant Cell
, vol.14
, pp. 559-574
-
-
Chen, W.1
Provart, N.J.2
Glazebrook, J.3
Katagiri, F.4
Chang, H.S.5
Eulgem, T.6
Mauch, F.7
Luan, S.8
Zou, G.9
Whitham, S.A.10
Budworth, P.R.11
Tao, Y.12
Xie, Z.13
Chen, X.14
Lam, S.15
Kreps, J.A.16
Harper, J.F.17
Si-Ammour, A.18
Mauch-Mani, B.19
Heinlein, M.20
Kobayashi, K.21
Hohn, T.22
Dangl, J.L.23
Wang, X.24
Zhu, T.25
more..
-
7
-
-
47749083127
-
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
-
Goda H., Sasaki E., Akiyama K., Maruyama-Nakashita A., Nakabayashi K., Li W., Ogawa M., Yamauchi Y., Preston J., Aoki K., Kiba T., Takatsuto S., Fujioka S., Asami T., Nakano T., Kato H., Mizuno T., Sakakibara H., Yamaguchi S., Nambara E., Kamiya Y., Takahashi H., Hirai M.Y., Sakurai T., Shinozaki K., Saito K., Yoshida S., Shimada Y. The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J. 2008, 55:526-542.
-
(2008)
Plant J.
, vol.55
, pp. 526-542
-
-
Goda, H.1
Sasaki, E.2
Akiyama, K.3
Maruyama-Nakashita, A.4
Nakabayashi, K.5
Li, W.6
Ogawa, M.7
Yamauchi, Y.8
Preston, J.9
Aoki, K.10
Kiba, T.11
Takatsuto, S.12
Fujioka, S.13
Asami, T.14
Nakano, T.15
Kato, H.16
Mizuno, T.17
Sakakibara, H.18
Yamaguchi, S.19
Nambara, E.20
Kamiya, Y.21
Takahashi, H.22
Hirai, M.Y.23
Sakurai, T.24
Shinozaki, K.25
Saito, K.26
Yoshida, S.27
Shimada, Y.28
more..
-
8
-
-
48249130774
-
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
-
Laubinger S., Zeller G., Henz S.R., Sachsenberg T., Widmer C.K., Naouar N., Vuylsteke M., Scholkopf B., Ratsch G., Weigel D. At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biol. 2008, 9:R112.
-
(2008)
Genome Biol.
, vol.9
-
-
Laubinger, S.1
Zeller, G.2
Henz, S.R.3
Sachsenberg, T.4
Widmer, C.K.5
Naouar, N.6
Vuylsteke, M.7
Scholkopf, B.8
Ratsch, G.9
Weigel, D.10
-
9
-
-
79551517326
-
Transcriptome analysis of high-temperature stress in developing barley caryopses: early stress responses and effects on storage compound biosynthesis
-
Mangelsen E., Kilian J., Harter K., Jansson C., Wanke D., Sundberg E. Transcriptome analysis of high-temperature stress in developing barley caryopses: early stress responses and effects on storage compound biosynthesis. Mol. Plant 2011, 4:97-115.
-
(2011)
Mol. Plant
, vol.4
, pp. 97-115
-
-
Mangelsen, E.1
Kilian, J.2
Harter, K.3
Jansson, C.4
Wanke, D.5
Sundberg, E.6
-
10
-
-
75949122780
-
AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling
-
Rehrauer H., Aquino C., Gruissem W., Henz S.R., Hilson P., Laubinger S., Naouar N., Patrignani A., Rombauts S., Shu H., Van de Peer Y., Vuylsteke M., Weigel D., Zeller G., Hennig L. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol. 2010, 152:487-499.
-
(2010)
Plant Physiol.
, vol.152
, pp. 487-499
-
-
Rehrauer, H.1
Aquino, C.2
Gruissem, W.3
Henz, S.R.4
Hilson, P.5
Laubinger, S.6
Naouar, N.7
Patrignani, A.8
Rombauts, S.9
Shu, H.10
Van de Peer, Y.11
Vuylsteke, M.12
Weigel, D.13
Zeller, G.14
Hennig, L.15
-
11
-
-
33644647217
-
Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage
-
Walia H., Wilson C., Condamine P., Liu X., Ismail A.M., Zeng L., Wanamaker S.I., Mandal J., Xu J., Cui X., Close T.J. Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol. 2005, 139:822-835.
-
(2005)
Plant Physiol.
, vol.139
, pp. 822-835
-
-
Walia, H.1
Wilson, C.2
Condamine, P.3
Liu, X.4
Ismail, A.M.5
Zeng, L.6
Wanamaker, S.I.7
Mandal, J.8
Xu, J.9
Cui, X.10
Close, T.J.11
-
12
-
-
79952609541
-
Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
-
Wang D., Pan Y., Zhao X., Zhu L., Fu B., Li Z. Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice. BMC Genomics 2011, 12:149.
-
(2011)
BMC Genomics
, vol.12
, pp. 149
-
-
Wang, D.1
Pan, Y.2
Zhao, X.3
Zhu, L.4
Fu, B.5
Li, Z.6
-
13
-
-
84885545678
-
Insights into Arabidopsis abiotic stress response from the AtGenExpress expression profile dataset
-
WILEY-VCH, Weinheim, H. Hirt (Ed.)
-
Wanke D., Berendzen K.W., Kilian J., Harter K. Insights into Arabidopsis abiotic stress response from the AtGenExpress expression profile dataset. Plant Stress Biology: Genomics Goes Systems Biology 2009, 199-225. WILEY-VCH, Weinheim. H. Hirt (Ed.).
-
(2009)
Plant Stress Biology: Genomics Goes Systems Biology
, pp. 199-225
-
-
Wanke, D.1
Berendzen, K.W.2
Kilian, J.3
Harter, K.4
-
14
-
-
66949124248
-
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
-
Zeller G., Henz S.R., Widmer C.K., Sachsenberg T., Ratsch G., Weigel D., Laubinger S. Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J. 2009, 58:1068-1082.
-
(2009)
Plant J.
, vol.58
, pp. 1068-1082
-
-
Zeller, G.1
Henz, S.R.2
Widmer, C.K.3
Sachsenberg, T.4
Ratsch, G.5
Weigel, D.6
Laubinger, S.7
-
15
-
-
77950990834
-
Drought and salt tolerances in wild relatives for wheat and barley improvement
-
Nevo E., Chen G. Drought and salt tolerances in wild relatives for wheat and barley improvement. Plant Cell Environ. 2010, 33:670-685.
-
(2010)
Plant Cell Environ.
, vol.33
, pp. 670-685
-
-
Nevo, E.1
Chen, G.2
-
16
-
-
28244492964
-
Microarray expression profiling resources for plant genomics
-
Rensink W.A., Buell C.R. Microarray expression profiling resources for plant genomics. Trends Plant Sci. 2005, 10:603-609.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 603-609
-
-
Rensink, W.A.1
Buell, C.R.2
-
17
-
-
33846623343
-
DNA microarray analyses in higher plants
-
Galbraith D.W. DNA microarray analyses in higher plants. OMICS 2006, 10:455-473.
-
(2006)
OMICS
, vol.10
, pp. 455-473
-
-
Galbraith, D.W.1
-
18
-
-
2342501846
-
Development and evaluation of an Arabidopsis whole genome Affymetrix probe array
-
Redman J.C., Haas B.J., Tanimoto G., Town C.D. Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. Plant J. 2004, 38:545-561.
-
(2004)
Plant J.
, vol.38
, pp. 545-561
-
-
Redman, J.C.1
Haas, B.J.2
Tanimoto, G.3
Town, C.D.4
-
19
-
-
16344368681
-
Proteome analysis of sugar beet leaves under drought stress
-
Hajheidari M., Abdollahian-Noghabi M., Askari H., Heidari M., Sadeghian S.Y., Ober E.S., Salekdeh G.H. Proteome analysis of sugar beet leaves under drought stress. Proteomics 2005, 5:950-960.
-
(2005)
Proteomics
, vol.5
, pp. 950-960
-
-
Hajheidari, M.1
Abdollahian-Noghabi, M.2
Askari, H.3
Heidari, M.4
Sadeghian, S.Y.5
Ober, E.S.6
Salekdeh, G.H.7
-
20
-
-
70349575391
-
Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress
-
Walia H., Wilson C., Ismail A.M., Close T.J., Cui X. Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress. BMC Genomics 2009, 10:398.
-
(2009)
BMC Genomics
, vol.10
, pp. 398
-
-
Walia, H.1
Wilson, C.2
Ismail, A.M.3
Close, T.J.4
Cui, X.5
-
21
-
-
1642441342
-
Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants
-
Chinnusamy V., Schumaker K., Zhu J.K. Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. J. Exp. Bot. 2004, 55:225-236.
-
(2004)
J. Exp. Bot.
, vol.55
, pp. 225-236
-
-
Chinnusamy, V.1
Schumaker, K.2
Zhu, J.K.3
-
22
-
-
34247200577
-
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
-
Kilian J., Whitehead D., Horak J., Wanke D., Weinl S., Batistic O., D'Angelo C., Bornberg-Bauer E., Kudla J., Harter K. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 2007, 50:347-363.
-
(2007)
Plant J.
, vol.50
, pp. 347-363
-
-
Kilian, J.1
Whitehead, D.2
Horak, J.3
Wanke, D.4
Weinl, S.5
Batistic, O.6
D'Angelo, C.7
Bornberg-Bauer, E.8
Kudla, J.9
Harter, K.10
-
23
-
-
0036728244
-
Oxidative stress, antioxidants and stress tolerance
-
Mittler R. Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci. 2002, 7:405-410.
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 405-410
-
-
Mittler, R.1
-
24
-
-
0038119993
-
Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures
-
Provart N.J., Gil P., Chen W., Han B., Chang H.S., Wang X., Zhu T. Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures. Plant Physiol. 2003, 132:893-906.
-
(2003)
Plant Physiol.
, vol.132
, pp. 893-906
-
-
Provart, N.J.1
Gil, P.2
Chen, W.3
Han, B.4
Chang, H.S.5
Wang, X.6
Zhu, T.7
-
25
-
-
38549135390
-
The next generation of microarray research: applications in evolutionary and ecological genomics
-
Shiu S.H., Borevitz J.O. The next generation of microarray research: applications in evolutionary and ecological genomics. Heredity 2008, 100:141-149.
-
(2008)
Heredity
, vol.100
, pp. 141-149
-
-
Shiu, S.H.1
Borevitz, J.O.2
-
26
-
-
34547144147
-
Plastic and adaptive gene expression patterns associated with temperature stress in Arabidopsis thaliana
-
Swindell W.R., Huebner M., Weber A.P. Plastic and adaptive gene expression patterns associated with temperature stress in Arabidopsis thaliana. Heredity 2007, 99:143-150.
-
(2007)
Heredity
, vol.99
, pp. 143-150
-
-
Swindell, W.R.1
Huebner, M.2
Weber, A.P.3
-
27
-
-
77950418344
-
Research on plant abiotic stress responses in the post-genome era: past, present and future
-
Hirayama T., Shinozaki K. Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J. 2010, 61:1041-1052.
-
(2010)
Plant J.
, vol.61
, pp. 1041-1052
-
-
Hirayama, T.1
Shinozaki, K.2
-
28
-
-
70449115789
-
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats
-
Usadel B., Obayashi T., Mutwil M., Giorgi F.M., Bassel G.W., Tanimoto M., Chow A., Steinhauser D., Persson S., Provart N.J. Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ. 2009, 32:1633-1651.
-
(2009)
Plant Cell Environ.
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
Chow, A.7
Steinhauser, D.8
Persson, S.9
Provart, N.J.10
-
29
-
-
84856623365
-
Regulatory networks: inferring functional relationships through Co-expression
-
World Scientific, Singapore
-
Wanke D., Hahn A., Kilian J., Harter K., Berendzen K.W. Regulatory networks: inferring functional relationships through Co-expression. Quantum Bio-Informatics III: From Quantum Information to Bio-Informatics 2010, vol. 26:405-424. World Scientific, Singapore.
-
(2010)
Quantum Bio-Informatics III: From Quantum Information to Bio-Informatics
, vol.26
, pp. 405-424
-
-
Wanke, D.1
Hahn, A.2
Kilian, J.3
Harter, K.4
Berendzen, K.W.5
-
30
-
-
0035107803
-
Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray
-
Seki M., Narusaka M., Abe H., Kasuga M., Yamaguchi-Shinozaki K., Carninci P., Hayashizaki Y., Shinozaki K. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 2001, 13:61-72.
-
(2001)
Plant Cell
, vol.13
, pp. 61-72
-
-
Seki, M.1
Narusaka, M.2
Abe, H.3
Kasuga, M.4
Yamaguchi-Shinozaki, K.5
Carninci, P.6
Hayashizaki, Y.7
Shinozaki, K.8
-
31
-
-
0036671216
-
Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
-
Fowler S., Thomashow M.F. Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 2002, 14:1675-1690.
-
(2002)
Plant Cell
, vol.14
, pp. 1675-1690
-
-
Fowler, S.1
Thomashow, M.F.2
-
32
-
-
0036909761
-
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
-
Kreps J.A., Wu Y., Chang H.S., Zhu T., Wang X., Harper J.F. Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol. 2002, 130:2129-2141.
-
(2002)
Plant Physiol.
, vol.130
, pp. 2129-2141
-
-
Kreps, J.A.1
Wu, Y.2
Chang, H.S.3
Zhu, T.4
Wang, X.5
Harper, J.F.6
-
33
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M., Davison T.S., Henz S.R., Pape U.J., Demar M., Vingron M., Scholkopf B., Weigel D., Lohmann J.U. A gene expression map of Arabidopsis thaliana development. Nat. Genet. 2005, 37:501-506.
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
34
-
-
79955586204
-
Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation
-
Lafos M., Kroll P., Hohenstatt M.L., Thorpe F.L., Clarenz O., Schubert D. Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation. PLoS Genet. 2011, 7:e1002040.
-
(2011)
PLoS Genet.
, vol.7
-
-
Lafos, M.1
Kroll, P.2
Hohenstatt, M.L.3
Thorpe, F.L.4
Clarenz, O.5
Schubert, D.6
-
35
-
-
14044271573
-
Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation
-
Werner J.D., Borevitz J.O., Warthmann N., Trainer G.T., Ecker J.R., Chory J., Weigel D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:2460-2465.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 2460-2465
-
-
Werner, J.D.1
Borevitz, J.O.2
Warthmann, N.3
Trainer, G.T.4
Ecker, J.R.5
Chory, J.6
Weigel, D.7
-
36
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
-
Zhang X., Yazaki J., Sundaresan A., Cokus S., Chan S.W., Chen H., Henderson I.R., Shinn P., Pellegrini M., Jacobsen S.E., Ecker J.R. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 2006, 126:1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
Ecker, J.R.11
-
37
-
-
79952359976
-
Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks
-
Costas C., de la Paz Sanchez M., Stroud H., Yu Y., Oliveros J.C., Feng S., Benguria A., Lopez-Vidriero I., Zhang X., Solano R., Jacobsen S.E., Gutierrez C. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat. Struct. Mol. Biol. 2011, 18:395-400.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 395-400
-
-
Costas, C.1
de la Paz Sanchez, M.2
Stroud, H.3
Yu, Y.4
Oliveros, J.C.5
Feng, S.6
Benguria, A.7
Lopez-Vidriero, I.8
Zhang, X.9
Solano, R.10
Jacobsen, S.E.11
Gutierrez, C.12
-
38
-
-
45549086886
-
Array-based high-throughput DNA markers for crop improvement
-
Gupta P.K., Rustgi S., Mir R.R. Array-based high-throughput DNA markers for crop improvement. Heredity 2008, 101:5-18.
-
(2008)
Heredity
, vol.101
, pp. 5-18
-
-
Gupta, P.K.1
Rustgi, S.2
Mir, R.R.3
-
39
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu R.K., Feng S., Bernatavichute Y.V., Chen P.Y., Stroud H., Yu Y., Hetzel J.A., Kuo F., Kim J., Cokus S.J., Casero D., Bernal M., Huijser P., Clark A.T., Kramer U., Merchant S.S., Zhang X., Jacobsen S.E., Pellegrini M. Relationship between nucleosome positioning and DNA methylation. Nature 2010, 466:388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
Yu, Y.6
Hetzel, J.A.7
Kuo, F.8
Kim, J.9
Cokus, S.J.10
Casero, D.11
Bernal, M.12
Huijser, P.13
Clark, A.T.14
Kramer, U.15
Merchant, S.S.16
Zhang, X.17
Jacobsen, S.E.18
Pellegrini, M.19
-
40
-
-
10644247621
-
Applications of DNA tiling arrays for whole-genome analysis
-
Mockler T.C., Chan S., Sundaresan A., Chen H., Jacobsen S.E., Ecker J.R. Applications of DNA tiling arrays for whole-genome analysis. Genomics 2005, 85:1-15.
-
(2005)
Genomics
, vol.85
, pp. 1-15
-
-
Mockler, T.C.1
Chan, S.2
Sundaresan, A.3
Chen, H.4
Jacobsen, S.E.5
Ecker, J.R.6
-
41
-
-
33745068992
-
Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants
-
Thibaud-Nissen F., Wu H., Richmond T., Redman J.C., Johnson C., Green R., Arias J., Town C.D. Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants. Plant J. 2006, 47:152-162.
-
(2006)
Plant J.
, vol.47
, pp. 152-162
-
-
Thibaud-Nissen, F.1
Wu, H.2
Richmond, T.3
Redman, J.C.4
Johnson, C.5
Green, R.6
Arias, J.7
Town, C.D.8
-
42
-
-
44249114568
-
Cell identity mediates the response of Arabidopsis roots to abiotic stress
-
Dinneny J.R., Long T.A., Wang J.Y., Jung J.W., Mace D., Pointer S., Barron C., Brady S.M., Schiefelbein J., Benfey P.N. Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science 2008, 320:942-945.
-
(2008)
Science
, vol.320
, pp. 942-945
-
-
Dinneny, J.R.1
Long, T.A.2
Wang, J.Y.3
Jung, J.W.4
Mace, D.5
Pointer, S.6
Barron, C.7
Brady, S.M.8
Schiefelbein, J.9
Benfey, P.N.10
-
43
-
-
42649087448
-
To grow or not to grow: what can we learn on ethylene-gibberellin cross-talk by in silico gene expression analysis?
-
Dugardeyn J., Vandenbussche F., Van Der Straeten D. To grow or not to grow: what can we learn on ethylene-gibberellin cross-talk by in silico gene expression analysis?. J. Exp. Bot. 2008, 59:1-16.
-
(2008)
J. Exp. Bot.
, vol.59
, pp. 1-16
-
-
Dugardeyn, J.1
Vandenbussche, F.2
Van Der Straeten, D.3
-
44
-
-
79251480045
-
Photosynthesis and drought: can we make metabolic connections from available data?
-
Pinheiro C., Chaves M.M. Photosynthesis and drought: can we make metabolic connections from available data?. J. Exp. Bot. 2010, 62:869-882.
-
(2010)
J. Exp. Bot.
, vol.62
, pp. 869-882
-
-
Pinheiro, C.1
Chaves, M.M.2
-
45
-
-
34347265817
-
Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways
-
Swindell W.R., Huebner M., Weber A.P. Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics 2007, 8:125.
-
(2007)
BMC Genomics
, vol.8
, pp. 125
-
-
Swindell, W.R.1
Huebner, M.2
Weber, A.P.3
-
46
-
-
48049085446
-
Jasmonate signaling: a conserved mechanism of hormone sensing
-
Katsir L., Chung H.S., Koo A.J., Howe G.A. Jasmonate signaling: a conserved mechanism of hormone sensing. Curr. Opin. Plant Biol. 2008, 11:428-435.
-
(2008)
Curr. Opin. Plant Biol.
, vol.11
, pp. 428-435
-
-
Katsir, L.1
Chung, H.S.2
Koo, A.J.3
Howe, G.A.4
-
47
-
-
79959898336
-
ABA-mediated transcriptional regulation in response to osmotic stress in plants
-
Fujita Y., Fujita M., Shinozaki K., Yamaguchi-Shinozaki K. ABA-mediated transcriptional regulation in response to osmotic stress in plants. J. Plant Res. 2011, 124:509-525.
-
(2011)
J. Plant Res.
, vol.124
, pp. 509-525
-
-
Fujita, Y.1
Fujita, M.2
Shinozaki, K.3
Yamaguchi-Shinozaki, K.4
-
48
-
-
77956175784
-
AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling
-
Dietz K.J., Vogel M.O., Viehhauser A. AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma 2010, 245:3-14.
-
(2010)
Protoplasma
, vol.245
, pp. 3-14
-
-
Dietz, K.J.1
Vogel, M.O.2
Viehhauser, A.3
-
49
-
-
34848897179
-
Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development
-
Wasternack C. Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Ann. Bot. 2007, 100:681-697.
-
(2007)
Ann. Bot.
, vol.100
, pp. 681-697
-
-
Wasternack, C.1
-
50
-
-
79951984387
-
Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics
-
Sanchez D.H., Pieckenstain F.L., Szymanski J., Erban A., Bromke M., Hannah M.A., Kraemer U., Kopka J., Udvardi M.K. Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics. PLoS One 2011, 6:e17094.
-
(2011)
PLoS One
, vol.6
-
-
Sanchez, D.H.1
Pieckenstain, F.L.2
Szymanski, J.3
Erban, A.4
Bromke, M.5
Hannah, M.A.6
Kraemer, U.7
Kopka, J.8
Udvardi, M.K.9
-
51
-
-
77949535960
-
Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses
-
Mustroph A., Lee S.C., Oosumi T., Zanetti M.E., Yang H., Ma K., Yaghoubi-Masihi A., Fukao T., Bailey-Serres J. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Plant Physiol. 2010, 152:1484-1500.
-
(2010)
Plant Physiol.
, vol.152
, pp. 1484-1500
-
-
Mustroph, A.1
Lee, S.C.2
Oosumi, T.3
Zanetti, M.E.4
Yang, H.5
Ma, K.6
Yaghoubi-Masihi, A.7
Fukao, T.8
Bailey-Serres, J.9
-
52
-
-
79551572836
-
Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress
-
Cotsaftis O., Plett D., Johnson A.A., Walia H., Wilson C., Ismail A.M., Close T.J., Tester M., Baumann U. Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress. Mol. Plant 2011, 4:25-41.
-
(2011)
Mol. Plant
, vol.4
, pp. 25-41
-
-
Cotsaftis, O.1
Plett, D.2
Johnson, A.A.3
Walia, H.4
Wilson, C.5
Ismail, A.M.6
Close, T.J.7
Tester, M.8
Baumann, U.9
-
53
-
-
79959894744
-
Systems biology approaches to abscisic acid signaling
-
Umezawa T. Systems biology approaches to abscisic acid signaling. J. Plant Res. 2011, 124:539-548.
-
(2011)
J. Plant Res.
, vol.124
, pp. 539-548
-
-
Umezawa, T.1
-
54
-
-
78651268618
-
A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
-
Street N.R., Jansson S., Hvidsten T.R. A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation. BMC Plant Biol. 2011, 11:13.
-
(2011)
BMC Plant Biol.
, vol.11
, pp. 13
-
-
Street, N.R.1
Jansson, S.2
Hvidsten, T.R.3
-
55
-
-
77952480844
-
Genetic engineering for modern agriculture: challenges and perspectives
-
Mittler R., Blumwald E. Genetic engineering for modern agriculture: challenges and perspectives. Annu. Rev. Plant Biol. 2010, 61:443-462.
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 443-462
-
-
Mittler, R.1
Blumwald, E.2
-
56
-
-
0036001076
-
Hydrogen peroxide and nitric oxide as signalling molecules in plants
-
Neill S.J., Desikan R., Clarke A., Hurst R.D., Hancock J.T. Hydrogen peroxide and nitric oxide as signalling molecules in plants. J. Exp. Bot. 2002, 53:1237-1247.
-
(2002)
J. Exp. Bot.
, vol.53
, pp. 1237-1247
-
-
Neill, S.J.1
Desikan, R.2
Clarke, A.3
Hurst, R.D.4
Hancock, J.T.5
-
57
-
-
53549114759
-
Nitric oxide signaling in plant responses to abiotic stresses
-
Qiao W., Fan L.M. Nitric oxide signaling in plant responses to abiotic stresses. J. Integr. Plant Biol. 2008, 50:1238-1246.
-
(2008)
J. Integr. Plant Biol.
, vol.50
, pp. 1238-1246
-
-
Qiao, W.1
Fan, L.M.2
-
58
-
-
70450193083
-
Early signal transduction linking the synthesis of jasmonic acid in plant
-
Hu X., Li W., Chen Q., Yang Y. Early signal transduction linking the synthesis of jasmonic acid in plant. Plant Signal. Behav. 2009, 4:696-697.
-
(2009)
Plant Signal. Behav.
, vol.4
, pp. 696-697
-
-
Hu, X.1
Li, W.2
Chen, Q.3
Yang, Y.4
-
59
-
-
84856595068
-
Nitric oxide: A ubiquitous signaling molecule with diverse role in plants
-
Misra A.N., Misra M., Singh R. Nitric oxide: A ubiquitous signaling molecule with diverse role in plants. Afr. J. Plant Sci. 2011, 5:57-74.
-
(2011)
Afr. J. Plant Sci.
, vol.5
, pp. 57-74
-
-
Misra, A.N.1
Misra, M.2
Singh, R.3
-
60
-
-
44049090117
-
Synergistic activation of the Arabidopsis NADPH oxidase AtrbohD by Ca2+ and phosphorylation
-
Ogasawara Y., Kaya H., Hiraoka G., Yumoto F., Kimura S., Kadota Y., Hishinuma H., Senzaki E., Yamagoe S., Nagata K., Nara M., Suzuki K., Tanokura M., Kuchitsu K. Synergistic activation of the Arabidopsis NADPH oxidase AtrbohD by Ca2+ and phosphorylation. J. Biol. Chem. 2008, 283:8885-8892.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 8885-8892
-
-
Ogasawara, Y.1
Kaya, H.2
Hiraoka, G.3
Yumoto, F.4
Kimura, S.5
Kadota, Y.6
Hishinuma, H.7
Senzaki, E.8
Yamagoe, S.9
Nagata, K.10
Nara, M.11
Suzuki, K.12
Tanokura, M.13
Kuchitsu, K.14
-
61
-
-
77950638285
-
Expressional analysis and role of calcium regulated kinases in abiotic stress signaling
-
Das R., Pandey G.K. Expressional analysis and role of calcium regulated kinases in abiotic stress signaling. Curr. Genomics 2010, 11:2-13.
-
(2010)
Curr. Genomics
, vol.11
, pp. 2-13
-
-
Das, R.1
Pandey, G.K.2
-
62
-
-
79551546376
-
Calcium-dependent protein kinase CPK21 functions in abiotic stress response in Arabidopsis thaliana
-
Franz S., Ehlert B., Liese A., Kurth J., Cazale A.C., Romeis T. Calcium-dependent protein kinase CPK21 functions in abiotic stress response in Arabidopsis thaliana. Mol. Plant 2011, 4:83-96.
-
(2011)
Mol. Plant
, vol.4
, pp. 83-96
-
-
Franz, S.1
Ehlert, B.2
Liese, A.3
Kurth, J.4
Cazale, A.C.5
Romeis, T.6
-
63
-
-
30644477805
-
Calcium ions are involved in the delay of plant cell cycle progression by abiotic stresses
-
Sano T., Higaki T., Handa K., Kadota Y., Kuchitsu K., Hasezawa S., Hoffmann A., Endter J., Zimmermann U., Hedrich R., Roitsch T. Calcium ions are involved in the delay of plant cell cycle progression by abiotic stresses. FEBS Lett. 2006, 580:597-602.
-
(2006)
FEBS Lett.
, vol.580
, pp. 597-602
-
-
Sano, T.1
Higaki, T.2
Handa, K.3
Kadota, Y.4
Kuchitsu, K.5
Hasezawa, S.6
Hoffmann, A.7
Endter, J.8
Zimmermann, U.9
Hedrich, R.10
Roitsch, T.11
-
64
-
-
77957341467
-
MYB transcription factors in Arabidopsis
-
Dubos C., Stracke R., Grotewold E., Weisshaar B., Martin C., Lepiniec L. MYB transcription factors in Arabidopsis. Trends Plant Sci. 2010, 15:573-581.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 573-581
-
-
Dubos, C.1
Stracke, R.2
Grotewold, E.3
Weisshaar, B.4
Martin, C.5
Lepiniec, L.6
-
65
-
-
68349154252
-
Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice
-
Qiu D., Xiao J., Xie W., Cheng H., Li X., Wang S. Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice. BMC Plant Biol. 2009, 9:74.
-
(2009)
BMC Plant Biol.
, vol.9
, pp. 74
-
-
Qiu, D.1
Xiao, J.2
Xie, W.3
Cheng, H.4
Li, X.5
Wang, S.6
-
66
-
-
77956848298
-
Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana
-
Srivastava G.P., Li P., Liu J., Xu D. Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana. BMC Syst. Biol. 2010, 4(Suppl. 2):S2.
-
(2010)
BMC Syst. Biol.
, vol.4
, Issue.SUPPL. 2
-
-
Srivastava, G.P.1
Li, P.2
Liu, J.3
Xu, D.4
-
67
-
-
77955579160
-
Genome-wide analysis of NAC transcription factor family in rice
-
Nuruzzaman M., Manimekalai R., Sharoni A.M., Satoh K., Kondoh H., Ooka H., Kikuchi S. Genome-wide analysis of NAC transcription factor family in rice. Gene 2010, 465:30-44.
-
(2010)
Gene
, vol.465
, pp. 30-44
-
-
Nuruzzaman, M.1
Manimekalai, R.2
Sharoni, A.M.3
Satoh, K.4
Kondoh, H.5
Ooka, H.6
Kikuchi, S.7
-
68
-
-
78650217076
-
Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress
-
Chen H., Lai Z., Shi J., Xiao Y., Chen Z., Xu X. Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress. BMC Plant Biol. 2010, 10:281.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 281
-
-
Chen, H.1
Lai, Z.2
Shi, J.3
Xiao, Y.4
Chen, Z.5
Xu, X.6
-
69
-
-
34548387176
-
WRKY62 transcription factor acts downstream of cytosolic NPR1 and negatively regulates jasmonate-responsive gene expression
-
Mao P., Duan M., Wei C., Li Y. WRKY62 transcription factor acts downstream of cytosolic NPR1 and negatively regulates jasmonate-responsive gene expression. Plant Cell Physiol. 2007, 48:833-842.
-
(2007)
Plant Cell Physiol.
, vol.48
, pp. 833-842
-
-
Mao, P.1
Duan, M.2
Wei, C.3
Li, Y.4
-
70
-
-
77954921218
-
ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis
-
Ren X., Chen Z., Liu Y., Zhang H., Zhang M., Liu Q., Hong X., Zhu J.K., Gong Z. ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis. Plant J. 2010, 63:417-429.
-
(2010)
Plant J.
, vol.63
, pp. 417-429
-
-
Ren, X.1
Chen, Z.2
Liu, Y.3
Zhang, H.4
Zhang, M.5
Liu, Q.6
Hong, X.7
Zhu, J.K.8
Gong, Z.9
-
71
-
-
79957503763
-
ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions
-
Seiler C., Harshavardhan V.T., Rajesh K., Reddy P.S., Strickert M., Rolletschek H., Scholz U., Wobus U., Sreenivasulu N. ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions. J. Exp. Bot. 2011, 62:2615-2632.
-
(2011)
J. Exp. Bot.
, vol.62
, pp. 2615-2632
-
-
Seiler, C.1
Harshavardhan, V.T.2
Rajesh, K.3
Reddy, P.S.4
Strickert, M.5
Rolletschek, H.6
Scholz, U.7
Wobus, U.8
Sreenivasulu, N.9
-
72
-
-
79951562208
-
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants
-
Obayashi T., Nishida K., Kasahara K., Kinoshita K. ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol. 2011, 52:213-219.
-
(2011)
Plant Cell Physiol.
, vol.52
, pp. 213-219
-
-
Obayashi, T.1
Nishida, K.2
Kasahara, K.3
Kinoshita, K.4
-
73
-
-
77955027738
-
Inhibition of biphasic ethylene production enhances tolerance to abiotic stress by reducing the accumulation of reactive oxygen species in Nicotiana tabacum
-
Wi S.J., Jang S.J., Park K.Y. Inhibition of biphasic ethylene production enhances tolerance to abiotic stress by reducing the accumulation of reactive oxygen species in Nicotiana tabacum. Mol. Cells 2010, 30:37-49.
-
(2010)
Mol. Cells
, vol.30
, pp. 37-49
-
-
Wi, S.J.1
Jang, S.J.2
Park, K.Y.3
-
74
-
-
79952986976
-
Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice
-
Ray S., Dansana P.K., Giri J., Deveshwar P., Arora R., Agarwal P., Khurana J.P., Kapoor S., Tyagi A.K. Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice. Funct. Integr. Genomics 2010, 11:157-178.
-
(2010)
Funct. Integr. Genomics
, vol.11
, pp. 157-178
-
-
Ray, S.1
Dansana, P.K.2
Giri, J.3
Deveshwar, P.4
Arora, R.5
Agarwal, P.6
Khurana, J.P.7
Kapoor, S.8
Tyagi, A.K.9
-
75
-
-
78650853222
-
Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response
-
Jaskiewicz M., Conrath U., Peterhansel C. Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Rep. 2010, 12:50-55.
-
(2010)
EMBO Rep.
, vol.12
, pp. 50-55
-
-
Jaskiewicz, M.1
Conrath, U.2
Peterhansel, C.3
-
76
-
-
77950990836
-
Chromatin regulation functions in plant abiotic stress responses
-
Kim J.M., To T.K., Nishioka T., Seki M. Chromatin regulation functions in plant abiotic stress responses. Plant Cell Environ. 2010, 33:604-611.
-
(2010)
Plant Cell Environ.
, vol.33
, pp. 604-611
-
-
Kim, J.M.1
To, T.K.2
Nishioka, T.3
Seki, M.4
-
77
-
-
73149085055
-
H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis
-
Kumar S.V., Wigge P.A. H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis. Cell 2010, 140:136-147.
-
(2010)
Cell
, vol.140
, pp. 136-147
-
-
Kumar, S.V.1
Wigge, P.A.2
-
78
-
-
53649108992
-
Abscisic acid-mediated epigenetic processes in plant development and stress responses
-
Chinnusamy V., Gong Z., Zhu J.K. Abscisic acid-mediated epigenetic processes in plant development and stress responses. J. Integr. Plant Biol. 2008, 50:1187-1195.
-
(2008)
J. Integr. Plant Biol.
, vol.50
, pp. 1187-1195
-
-
Chinnusamy, V.1
Gong, Z.2
Zhu, J.K.3
-
79
-
-
77951050644
-
Epigenetic chromatin modifiers in barley: IV. The study of barley polycomb group (PcG) genes during seed development and in response to external ABA
-
Kapazoglou A., Tondelli A., Papaefthimiou D., Ampatzidou H., Francia E., Stanca M.A., Bladenopoulos K., Tsaftaris A.S. Epigenetic chromatin modifiers in barley: IV. The study of barley polycomb group (PcG) genes during seed development and in response to external ABA. BMC Plant Biol. 2010, 10:73.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 73
-
-
Kapazoglou, A.1
Tondelli, A.2
Papaefthimiou, D.3
Ampatzidou, H.4
Francia, E.5
Stanca, M.A.6
Bladenopoulos, K.7
Tsaftaris, A.S.8
-
80
-
-
77953198418
-
Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana
-
Todesco M., Balasubramanian S., Hu T.T., Traw M.B., Horton M., Epple P., Kuhns C., Sureshkumar S., Schwartz C., Lanz C., Laitinen R.A., Huang Y., Chory J., Lipka V., Borevitz J.O., Dangl J.L., Bergelson J., Nordborg M., Weigel D. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature 2010, 465:632-636.
-
(2010)
Nature
, vol.465
, pp. 632-636
-
-
Todesco, M.1
Balasubramanian, S.2
Hu, T.T.3
Traw, M.B.4
Horton, M.5
Epple, P.6
Kuhns, C.7
Sureshkumar, S.8
Schwartz, C.9
Lanz, C.10
Laitinen, R.A.11
Huang, Y.12
Chory, J.13
Lipka, V.14
Borevitz, J.O.15
Dangl, J.L.16
Bergelson, J.17
Nordborg, M.18
Weigel, D.19
-
81
-
-
77955925113
-
Drought response in the spikes of barley: gene expression in the lemma, palea, awn, and seed
-
Abebe T., Melmaiee K., Berg V., Wise R.P. Drought response in the spikes of barley: gene expression in the lemma, palea, awn, and seed. Funct. Integr. Genomics 2010, 10:191-205.
-
(2010)
Funct. Integr. Genomics
, vol.10
, pp. 191-205
-
-
Abebe, T.1
Melmaiee, K.2
Berg, V.3
Wise, R.P.4
-
82
-
-
77951870928
-
Temperature stress and plant sexual reproduction: uncovering the weakest links
-
Zinn K.E., Tunc-Ozdemir M., Harper J.F. Temperature stress and plant sexual reproduction: uncovering the weakest links. J. Exp. Bot. 2010, 61:1959-1968.
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 1959-1968
-
-
Zinn, K.E.1
Tunc-Ozdemir, M.2
Harper, J.F.3
-
83
-
-
33645782761
-
Costs and benefits of priming for defense in Arabidopsis
-
van Hulten M., Pelser M., van Loon L.C., Pieterse C.M., Ton J. Costs and benefits of priming for defense in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:5602-5607.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 5602-5607
-
-
van Hulten, M.1
Pelser, M.2
van Loon, L.C.3
Pieterse, C.M.4
Ton, J.5
-
84
-
-
79959880142
-
ABA in bryophytes: how a universal growth regulator in life became a plant hormone?
-
Takezawa D., Komatsu K., Sakata Y. ABA in bryophytes: how a universal growth regulator in life became a plant hormone?. J. Plant Res. 2011, 124:437-453.
-
(2011)
J. Plant Res.
, vol.124
, pp. 437-453
-
-
Takezawa, D.1
Komatsu, K.2
Sakata, Y.3
-
85
-
-
70350516781
-
The wound hormone jasmonate
-
Koo A.J., Howe G.A. The wound hormone jasmonate. Phytochemistry 2009, 70:1571-1580.
-
(2009)
Phytochemistry
, vol.70
, pp. 1571-1580
-
-
Koo, A.J.1
Howe, G.A.2
-
86
-
-
70349138933
-
A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis
-
Koo A.J., Gao X., Jones A.D., Howe G.A. A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis. Plant J. 2009, 59:974-986.
-
(2009)
Plant J.
, vol.59
, pp. 974-986
-
-
Koo, A.J.1
Gao, X.2
Jones, A.D.3
Howe, G.A.4
-
87
-
-
77951227903
-
Information processing without brains-the power of intercellular regulators in plants
-
Busch W., Benfey P.N. Information processing without brains-the power of intercellular regulators in plants. Development 2010, 137:1215-1226.
-
(2010)
Development
, vol.137
, pp. 1215-1226
-
-
Busch, W.1
Benfey, P.N.2
-
88
-
-
70350447621
-
The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli
-
Miller G., Schlauch K., Tam R., Cortes D., Torres M.A., Shulaev V., Dangl J.L., Mittler R. The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Sci. Signal. 2009, 2:ra45.
-
(2009)
Sci. Signal.
, vol.2
-
-
Miller, G.1
Schlauch, K.2
Tam, R.3
Cortes, D.4
Torres, M.A.5
Shulaev, V.6
Dangl, J.L.7
Mittler, R.8
-
89
-
-
4444286398
-
Nitric oxide signalling functions in plant-pathogen interactions
-
Romero-Puertas M.C., Perazzolli M., Zago E.D., Delledonne M. Nitric oxide signalling functions in plant-pathogen interactions. Cell. Microbiol. 2004, 6:795-803.
-
(2004)
Cell. Microbiol.
, vol.6
, pp. 795-803
-
-
Romero-Puertas, M.C.1
Perazzolli, M.2
Zago, E.D.3
Delledonne, M.4
-
90
-
-
39149139288
-
Systemic and intracellular responses to photooxidative stress in Arabidopsis
-
Rossel J.B., Wilson P.B., Hussain D., Woo N.S., Gordon M.J., Mewett O.P., Howell K.A., Whelan J., Kazan K., Pogson B.J. Systemic and intracellular responses to photooxidative stress in Arabidopsis. Plant Cell 2007, 19:4091-4110.
-
(2007)
Plant Cell
, vol.19
, pp. 4091-4110
-
-
Rossel, J.B.1
Wilson, P.B.2
Hussain, D.3
Woo, N.S.4
Gordon, M.J.5
Mewett, O.P.6
Howell, K.A.7
Whelan, J.8
Kazan, K.9
Pogson, B.J.10
-
91
-
-
78149386740
-
Proteomic signatures uncover hydrogen peroxide and nitric oxide cross-talk signaling network in citrus plants
-
Tanou G., Job C., Belghazi M., Molassiotis A., Diamantidis G., Job D. Proteomic signatures uncover hydrogen peroxide and nitric oxide cross-talk signaling network in citrus plants. J. Proteome Res. 2010, 9:5994-6006.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 5994-6006
-
-
Tanou, G.1
Job, C.2
Belghazi, M.3
Molassiotis, A.4
Diamantidis, G.5
Job, D.6
-
92
-
-
69949097909
-
Salicylic acid, a multifaceted hormone to combat disease
-
Vlot A.C., Dempsey D.A., Klessig D.F. Salicylic acid, a multifaceted hormone to combat disease. Annu. Rev. Phytopathol. 2009, 47:177-206.
-
(2009)
Annu. Rev. Phytopathol.
, vol.47
, pp. 177-206
-
-
Vlot, A.C.1
Dempsey, D.A.2
Klessig, D.F.3
-
93
-
-
60349118100
-
Gene expression analyses for elucidating mechanisms of hormonal action in plants
-
Bassel G.W., Provart N.J. Gene expression analyses for elucidating mechanisms of hormonal action in plants. Methods Mol. Biol. 2009, 495:21-37.
-
(2009)
Methods Mol. Biol.
, vol.495
, pp. 21-37
-
-
Bassel, G.W.1
Provart, N.J.2
-
94
-
-
33746777825
-
Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses
-
Nemhauser J.L., Hong F., Chory J. Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell 2006, 126:467-475.
-
(2006)
Cell
, vol.126
, pp. 467-475
-
-
Nemhauser, J.L.1
Hong, F.2
Chory, J.3
-
95
-
-
77952511548
-
Abscisic acid: emergence of a core signaling network
-
Cutler S.R., Rodriguez P.L., Finkelstein R.R., Abrams S.R. Abscisic acid: emergence of a core signaling network. Annu. Rev. Plant Biol. 2010, 61:651-679.
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 651-679
-
-
Cutler, S.R.1
Rodriguez, P.L.2
Finkelstein, R.R.3
Abrams, S.R.4
-
96
-
-
64249098608
-
Priming in systemic plant immunity
-
Jung H.W., Tschaplinski T.J., Wang L., Glazebrook J., Greenberg J.T. Priming in systemic plant immunity. Science 2009, 324:89-91.
-
(2009)
Science
, vol.324
, pp. 89-91
-
-
Jung, H.W.1
Tschaplinski, T.J.2
Wang, L.3
Glazebrook, J.4
Greenberg, J.T.5
-
97
-
-
77950632672
-
Phloem small RNAs, nutrient stress responses, and systemic mobility
-
Buhtz A., Pieritz J., Springer F., Kehr J. Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biol. 2010, 10:64.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 64
-
-
Buhtz, A.1
Pieritz, J.2
Springer, F.3
Kehr, J.4
-
98
-
-
79959907815
-
The ABA-mediated switch between submersed and emersed life-styles in aquatic macrophytes
-
Wanke D. The ABA-mediated switch between submersed and emersed life-styles in aquatic macrophytes. J. Plant Res. 2011, 124:467-475.
-
(2011)
J. Plant Res.
, vol.124
, pp. 467-475
-
-
Wanke, D.1
-
99
-
-
77950634814
-
Mechanisms of action and medicinal applications of abscisic acid
-
Bassaganya-Riera J., Skoneczka J., Kingston D.G., Krishnan A., Misyak S.A., Guri A.J., Pereira A., Carter A.B., Minorsky P., Tumarkin R., Hontecillas R. Mechanisms of action and medicinal applications of abscisic acid. Curr. Med. Chem. 2010, 17:467-478.
-
(2010)
Curr. Med. Chem.
, vol.17
, pp. 467-478
-
-
Bassaganya-Riera, J.1
Skoneczka, J.2
Kingston, D.G.3
Krishnan, A.4
Misyak, S.A.5
Guri, A.J.6
Pereira, A.7
Carter, A.B.8
Minorsky, P.9
Tumarkin, R.10
Hontecillas, R.11
-
100
-
-
0033832468
-
Salicylic acid has a role in regulating gene expression during leaf senescence
-
Morris K., MacKerness S.A., Page T., John C.F., Murphy A.M., Carr J.P., Buchanan-Wollaston V. Salicylic acid has a role in regulating gene expression during leaf senescence. Plant J. 2000, 23:677-685.
-
(2000)
Plant J.
, vol.23
, pp. 677-685
-
-
Morris, K.1
MacKerness, S.A.2
Page, T.3
John, C.F.4
Murphy, A.M.5
Carr, J.P.6
Buchanan-Wollaston, V.7
-
101
-
-
34547743829
-
The JAZ family of repressors is the missing link in jasmonate signalling
-
Chini A., Fonseca S., Fernandez G., Adie B., Chico J.M., Lorenzo O., Garcia-Casado G., Lopez-Vidriero I., Lozano F.M., Ponce M.R., Micol J.L., Solano R. The JAZ family of repressors is the missing link in jasmonate signalling. Nature 2007, 448:666-671.
-
(2007)
Nature
, vol.448
, pp. 666-671
-
-
Chini, A.1
Fonseca, S.2
Fernandez, G.3
Adie, B.4
Chico, J.M.5
Lorenzo, O.6
Garcia-Casado, G.7
Lopez-Vidriero, I.8
Lozano, F.M.9
Ponce, M.R.10
Micol, J.L.11
Solano, R.12
-
102
-
-
34547727206
-
JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling
-
Thines B., Katsir L., Melotto M., Niu Y., Mandaokar A., Liu G., Nomura K., He S.Y., Howe G.A., Browse J. JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Nature 2007, 448:661-665.
-
(2007)
Nature
, vol.448
, pp. 661-665
-
-
Thines, B.1
Katsir, L.2
Melotto, M.3
Niu, Y.4
Mandaokar, A.5
Liu, G.6
Nomura, K.7
He, S.Y.8
Howe, G.A.9
Browse, J.10
-
103
-
-
78650148237
-
Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis
-
Pandey S.P., Roccaro M., Schon M., Logemann E., Somssich I.E. Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis. Plant J. 2010, 64:912-923.
-
(2010)
Plant J.
, vol.64
, pp. 912-923
-
-
Pandey, S.P.1
Roccaro, M.2
Schon, M.3
Logemann, E.4
Somssich, I.E.5
-
104
-
-
79960260496
-
Role of nitric oxide in tolerance of plants to abiotic stress
-
Siddiqui M.H., Al-Whaibi M.H., Basalah M.O. Role of nitric oxide in tolerance of plants to abiotic stress. Protoplasma 2011, 248:447-455.
-
(2011)
Protoplasma
, vol.248
, pp. 447-455
-
-
Siddiqui, M.H.1
Al-Whaibi, M.H.2
Basalah, M.O.3
-
105
-
-
0346991919
-
Nitric oxide signaling in plant-pathogen interactions
-
Romero-Puertas M.C., Delledonne M. Nitric oxide signaling in plant-pathogen interactions. IUBMB Life 2003, 55:579-583.
-
(2003)
IUBMB Life
, vol.55
, pp. 579-583
-
-
Romero-Puertas, M.C.1
Delledonne, M.2
-
106
-
-
20444468564
-
A role for ETR1 in hydrogen peroxide signaling in stomatal guard cells
-
Desikan R., Hancock J.T., Bright J., Harrison J., Weir I., Hooley R., Neill S.J. A role for ETR1 in hydrogen peroxide signaling in stomatal guard cells. Plant Physiol. 2005, 137:831-834.
-
(2005)
Plant Physiol.
, vol.137
, pp. 831-834
-
-
Desikan, R.1
Hancock, J.T.2
Bright, J.3
Harrison, J.4
Weir, I.5
Hooley, R.6
Neill, S.J.7
-
107
-
-
69949189998
-
Subcellular localization and in vivo interactions of the Arabidopsis thaliana ethylene receptor family members
-
Grefen C., Stadele K., Ruzicka K., Obrdlik P., Harter K., Horak J. Subcellular localization and in vivo interactions of the Arabidopsis thaliana ethylene receptor family members. Mol. Plant 2008, 1:308-320.
-
(2008)
Mol. Plant
, vol.1
, pp. 308-320
-
-
Grefen, C.1
Stadele, K.2
Ruzicka, K.3
Obrdlik, P.4
Harter, K.5
Horak, J.6
-
108
-
-
40049098844
-
Local positive feedback regulation determines cell shape in root hair cells
-
Takeda S., Gapper C., Kaya H., Bell E., Kuchitsu K., Dolan L. Local positive feedback regulation determines cell shape in root hair cells. Science 2008, 319:1241-1244.
-
(2008)
Science
, vol.319
, pp. 1241-1244
-
-
Takeda, S.1
Gapper, C.2
Kaya, H.3
Bell, E.4
Kuchitsu, K.5
Dolan, L.6
-
109
-
-
0242500347
-
Reactive oxygen species produced by NADPH oxidase regulate plant cell growth
-
Foreman J., Demidchik V., Bothwell J.H., Mylona P., Miedema H., Torres M.A., Linstead P., Costa S., Brownlee C., Jones J.D., Davies J.M., Dolan L. Reactive oxygen species produced by NADPH oxidase regulate plant cell growth. Nature 2003, 422:442-446.
-
(2003)
Nature
, vol.422
, pp. 442-446
-
-
Foreman, J.1
Demidchik, V.2
Bothwell, J.H.3
Mylona, P.4
Miedema, H.5
Torres, M.A.6
Linstead, P.7
Costa, S.8
Brownlee, C.9
Jones, J.D.10
Davies, J.M.11
Dolan, L.12
-
111
-
-
0032493349
-
Jasmonate-induced responses are costly but benefit plants under attack in native populations
-
Baldwin I.T. Jasmonate-induced responses are costly but benefit plants under attack in native populations. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:8113-8118.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 8113-8118
-
-
Baldwin, I.T.1
-
112
-
-
0036006054
-
Benzothiadiazole-induced priming for potentiated responses to pathogen infection, wounding, and infiltration of water into leaves requires the NPR1/NIM1 gene in Arabidopsis
-
Kohler A., Schwindling S., Conrath U. Benzothiadiazole-induced priming for potentiated responses to pathogen infection, wounding, and infiltration of water into leaves requires the NPR1/NIM1 gene in Arabidopsis. Plant Physiol. 2002, 128:1046-1056.
-
(2002)
Plant Physiol.
, vol.128
, pp. 1046-1056
-
-
Kohler, A.1
Schwindling, S.2
Conrath, U.3
-
113
-
-
51949114671
-
The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice
-
Quilis J., Penas G., Messeguer J., Brugidou C., San Segundo B. The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice. Mol. Plant Microbe Interact. 2008, 21:1215-1231.
-
(2008)
Mol. Plant Microbe Interact.
, vol.21
, pp. 1215-1231
-
-
Quilis, J.1
Penas, G.2
Messeguer, J.3
Brugidou, C.4
San Segundo, B.5
-
114
-
-
33745475117
-
Salicylic acid-independent ENHANCED DISEASE SUSCEPTIBILITY1 signaling in Arabidopsis immunity and cell death is regulated by the monooxygenase FMO1 and the Nudix hydrolase NUDT7
-
Bartsch M., Gobbato E., Bednarek P., Debey S., Schultze J.L., Bautor J., Parker J.E. Salicylic acid-independent ENHANCED DISEASE SUSCEPTIBILITY1 signaling in Arabidopsis immunity and cell death is regulated by the monooxygenase FMO1 and the Nudix hydrolase NUDT7. Plant Cell 2006, 18:1038-1051.
-
(2006)
Plant Cell
, vol.18
, pp. 1038-1051
-
-
Bartsch, M.1
Gobbato, E.2
Bednarek, P.3
Debey, S.4
Schultze, J.L.5
Bautor, J.6
Parker, J.E.7
-
115
-
-
66449113964
-
Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana
-
Beckers G.J., Jaskiewicz M., Liu Y., Underwood W.R., He S.Y., Zhang S., Conrath U. Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana. Plant Cell 2009, 21:944-953.
-
(2009)
Plant Cell
, vol.21
, pp. 944-953
-
-
Beckers, G.J.1
Jaskiewicz, M.2
Liu, Y.3
Underwood, W.R.4
He, S.Y.5
Zhang, S.6
Conrath, U.7
-
116
-
-
33845789612
-
The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana
-
Swindell W.R. The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana. Genetics 2006, 174:1811-1824.
-
(2006)
Genetics
, vol.174
, pp. 1811-1824
-
-
Swindell, W.R.1
-
117
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton H.C., Ren B., Koh S.S., Harbison C.T., Kanin E., Jennings E.G., Lee T.I., True H.L., Lander E.S., Young R.A. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 2001, 12:323-337.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
118
-
-
12244267727
-
Global transcriptional responses of fission yeast to environmental stress
-
Chen D., Toone W.M., Mata J., Lyne R., Burns G., Kivinen K., Brazma A., Jones N., Bahler J. Global transcriptional responses of fission yeast to environmental stress. Mol. Biol. Cell 2003, 14:214-229.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 214-229
-
-
Chen, D.1
Toone, W.M.2
Mata, J.3
Lyne, R.4
Burns, G.5
Kivinen, K.6
Brazma, A.7
Jones, N.8
Bahler, J.9
-
119
-
-
33344455077
-
The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis
-
Davletova S., Schlauch K., Coutu J., Mittler R. The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 2005, 139:847-856.
-
(2005)
Plant Physiol.
, vol.139
, pp. 847-856
-
-
Davletova, S.1
Schlauch, K.2
Coutu, J.3
Mittler, R.4
-
120
-
-
13744249154
-
Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions
-
Sakamoto H., Maruyama K., Sakuma Y., Meshi T., Iwabuchi M., Shinozaki K., Yamaguchi-Shinozaki K. Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol. 2004, 136:2734-2746.
-
(2004)
Plant Physiol.
, vol.136
, pp. 2734-2746
-
-
Sakamoto, H.1
Maruyama, K.2
Sakuma, Y.3
Meshi, T.4
Iwabuchi, M.5
Shinozaki, K.6
Yamaguchi-Shinozaki, K.7
-
121
-
-
0037986744
-
Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis
-
Breton G., Danyluk J., Charron J.B., Sarhan F. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Plant Physiol. 2003, 132:64-74.
-
(2003)
Plant Physiol.
, vol.132
, pp. 64-74
-
-
Breton, G.1
Danyluk, J.2
Charron, J.B.3
Sarhan, F.4
-
122
-
-
49249111989
-
Shade avoidance
-
Franklin K.A. Shade avoidance. New Phytol. 2008, 179:930-944.
-
(2008)
New Phytol.
, vol.179
, pp. 930-944
-
-
Franklin, K.A.1
-
123
-
-
79952301863
-
Genome-wide analysis of light-dependent transcript accumulation patterns during early stages of Arabidopsis seedling deetiolation
-
Peschke F., Kretsch T. Genome-wide analysis of light-dependent transcript accumulation patterns during early stages of Arabidopsis seedling deetiolation. Plant Physiol. 2011, 155:1353-1366.
-
(2011)
Plant Physiol.
, vol.155
, pp. 1353-1366
-
-
Peschke, F.1
Kretsch, T.2
-
124
-
-
78651284406
-
ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments
-
Parkinson H., Sarkans U., Kolesnikov N., Abeygunawardena N., Burdett T., Dylag M., Emam I., Farne A., Hastings E., Holloway E., Kurbatova N., Lukk M., Malone J., Mani R., Pilicheva E., Rustici G., Sharma A., Williams E., Adamusiak T., Brandizi M., Sklyar N., Brazma A. ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res. 2010, 39:D1002-D1004.
-
(2010)
Nucleic Acids Res.
, vol.39
-
-
Parkinson, H.1
Sarkans, U.2
Kolesnikov, N.3
Abeygunawardena, N.4
Burdett, T.5
Dylag, M.6
Emam, I.7
Farne, A.8
Hastings, E.9
Holloway, E.10
Kurbatova, N.11
Lukk, M.12
Malone, J.13
Mani, R.14
Pilicheva, E.15
Rustici, G.16
Sharma, A.17
Williams, E.18
Adamusiak, T.19
Brandizi, M.20
Sklyar, N.21
Brazma, A.22
more..
-
125
-
-
35748941236
-
EDISA: extracting biclusters from multiple time-series of gene expression profiles
-
Supper J., Strauch M., Wanke D., Harter K., Zell A. EDISA: extracting biclusters from multiple time-series of gene expression profiles. BMC Bioinformatics 2007, 8:334.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 334
-
-
Supper, J.1
Strauch, M.2
Wanke, D.3
Harter, K.4
Zell, A.5
-
126
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma A., Hingamp P., Quackenbush J., Sherlock G., Spellman P., Stoeckert C., Aach J., Ansorge W., Ball C.A., Causton H.C., Gaasterland T., Glenisson P., Holstege F.C., Kim I.F., Markowitz V., Matese J.C., Parkinson H., Robinson A., Sarkans U., Schulze-Kremer S., Stewart J., Taylor R., Vilo J., Vingron M. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 2001, 29:365-371.
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
127
-
-
33645277092
-
The MGED Ontology: a resource for semantics-based description of microarray experiments
-
Whetzel P.L., Parkinson H., Causton H.C., Fan L., Fostel J., Fragoso G., Game L., Heiskanen M., Morrison N., Rocca-Serra P., Sansone S.A., Taylor C., White J., Stoeckert C.J. The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 2006, 22:866-873.
-
(2006)
Bioinformatics
, vol.22
, pp. 866-873
-
-
Whetzel, P.L.1
Parkinson, H.2
Causton, H.C.3
Fan, L.4
Fostel, J.5
Fragoso, G.6
Game, L.7
Heiskanen, M.8
Morrison, N.9
Rocca-Serra, P.10
Sansone, S.A.11
Taylor, C.12
White, J.13
Stoeckert, C.J.14
-
128
-
-
67649354569
-
Minimum Information About a Microarray Experiment (MIAME)-successes, failures, challenges
-
Brazma A. Minimum Information About a Microarray Experiment (MIAME)-successes, failures, challenges. ScientificWorldJournal 2009, 9:420-423.
-
(2009)
ScientificWorldJournal
, vol.9
, pp. 420-423
-
-
Brazma, A.1
-
129
-
-
77950547216
-
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories
-
Massonnet C., Vile D., Fabre J., Hannah M.A., Caldana C., Lisec J., Beemster G.T., Meyer R.C., Messerli G., Gronlund J.T., Perkovic J., Wigmore E., May S., Bevan M.W., Meyer C., Rubio-Diaz S., Weigel D., Micol J.L., Buchanan-Wollaston V., Fiorani F., Walsh S., Rinn B., Gruissem W., Hilson P., Hennig L., Willmitzer L., Granier C. Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol. 2010, 152:2142-2157.
-
(2010)
Plant Physiol.
, vol.152
, pp. 2142-2157
-
-
Massonnet, C.1
Vile, D.2
Fabre, J.3
Hannah, M.A.4
Caldana, C.5
Lisec, J.6
Beemster, G.T.7
Meyer, R.C.8
Messerli, G.9
Gronlund, J.T.10
Perkovic, J.11
Wigmore, E.12
May, S.13
Bevan, M.W.14
Meyer, C.15
Rubio-Diaz, S.16
Weigel, D.17
Micol, J.L.18
Buchanan-Wollaston, V.19
Fiorani, F.20
Walsh, S.21
Rinn, B.22
Gruissem, W.23
Hilson, P.24
Hennig, L.25
Willmitzer, L.26
Granier, C.27
more..
-
130
-
-
33746108159
-
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
-
Kuo W.P., Liu F., Trimarchi J., Punzo C., Lombardi M., Sarang J., Whipple M.E., Maysuria M., Serikawa K., Lee S.Y., McCrann D., Kang J., Shearstone J.R., Burke J., Park D.J., Wang X., Rector T.L., Ricciardi-Castagnoli P., Perrin S., Choi S., Bumgarner R., Kim J.H., Short G.F., Freeman M.W., Seed B., Jensen R., Church G.M., Hovig E., Cepko C.L., Park P., Ohno-Machado L., Jenssen T.K. A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nat. Biotechnol. 2006, 24:832-840.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 832-840
-
-
Kuo, W.P.1
Liu, F.2
Trimarchi, J.3
Punzo, C.4
Lombardi, M.5
Sarang, J.6
Whipple, M.E.7
Maysuria, M.8
Serikawa, K.9
Lee, S.Y.10
McCrann, D.11
Kang, J.12
Shearstone, J.R.13
Burke, J.14
Park, D.J.15
Wang, X.16
Rector, T.L.17
Ricciardi-Castagnoli, P.18
Perrin, S.19
Choi, S.20
Bumgarner, R.21
Kim, J.H.22
Short, G.F.23
Freeman, M.W.24
Seed, B.25
Jensen, R.26
Church, G.M.27
Hovig, E.28
Cepko, C.L.29
Park, P.30
Ohno-Machado, L.31
Jenssen, T.K.32
more..
-
131
-
-
0037020260
-
Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
-
Piper M.D., Daran-Lapujade P., Bro C., Regenberg B., Knudsen S., Nielsen J., Pronk J.T. Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae. J. Biol. Chem. 2002, 277:37001-37008.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 37001-37008
-
-
Piper, M.D.1
Daran-Lapujade, P.2
Bro, C.3
Regenberg, B.4
Knudsen, S.5
Nielsen, J.6
Pronk, J.T.7
-
132
-
-
84856611954
-
The analysis of gene expression and cis-regulatory elements in large microarray expression data sets
-
World Scientific, Singapore
-
Wanke D., Kilian J., Supper J., Berendzen K.W., Zell A., Harter K. The analysis of gene expression and cis-regulatory elements in large microarray expression data sets. Quantum Bio-Informatics: From Quantum Information to Bio-Informatics 2008, vol. 21:294-314. World Scientific, Singapore.
-
(2008)
Quantum Bio-Informatics: From Quantum Information to Bio-Informatics
, vol.21
, pp. 294-314
-
-
Wanke, D.1
Kilian, J.2
Supper, J.3
Berendzen, K.W.4
Zell, A.5
Harter, K.6
-
134
-
-
48449100027
-
GEPAS, a web-based tool for microarray data analysis and interpretation
-
Tarraga J., Medina I., Carbonell J., Huerta-Cepas J., Minguez P., Alloza E., Al-Shahrour F., Vegas-Azcarate S., Goetz S., Escobar P., Garcia-Garcia F., Conesa A., Montaner D., Dopazo J. GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 2008, 36:W308-W314.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Tarraga, J.1
Medina, I.2
Carbonell, J.3
Huerta-Cepas, J.4
Minguez, P.5
Alloza, E.6
Al-Shahrour, F.7
Vegas-Azcarate, S.8
Goetz, S.9
Escobar, P.10
Garcia-Garcia, F.11
Conesa, A.12
Montaner, D.13
Dopazo, J.14
-
136
-
-
40349091686
-
An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets
-
Winter D., Vinegar B., Nahal H., Ammar R., Wilson G.V., Provart N.J. An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One 2007, 2:e718.
-
(2007)
PLoS One
, vol.2
-
-
Winter, D.1
Vinegar, B.2
Nahal, H.3
Ammar, R.4
Wilson, G.V.5
Provart, N.J.6
-
137
-
-
47549107689
-
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
-
Mostafavi S., Ray D., Warde-Farley D., Grouios C., Morris Q. GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol. 2008, 9(Suppl. 1):S4.
-
(2008)
Genome Biol.
, vol.9
, Issue.SUPPL. 1
-
-
Mostafavi, S.1
Ray, D.2
Warde-Farley, D.3
Grouios, C.4
Morris, Q.5
-
138
-
-
65549102151
-
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
-
Sjodin A., Street N.R., Sandberg G., Gustafsson P., Jansson S. The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. New Phytol. 2009, 182:1013-1025.
-
(2009)
New Phytol.
, vol.182
, pp. 1013-1025
-
-
Sjodin, A.1
Street, N.R.2
Sandberg, G.3
Gustafsson, P.4
Jansson, S.5
-
139
-
-
73249138596
-
Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm
-
Mutwil M., Usadel B., Schutte M., Loraine A., Ebenhoh O., Persson S. Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Plant Physiol. 2010, 152:29-43.
-
(2010)
Plant Physiol.
, vol.152
, pp. 29-43
-
-
Mutwil, M.1
Usadel, B.2
Schutte, M.3
Loraine, A.4
Ebenhoh, O.5
Persson, S.6
-
140
-
-
55749087379
-
FunNet: an integrative tool for exploring transcriptional interactions
-
Prifti E., Zucker J.D., Clement K., Henegar C. FunNet: an integrative tool for exploring transcriptional interactions. Bioinformatics 2008, 24:2636-2638.
-
(2008)
Bioinformatics
, vol.24
, pp. 2636-2638
-
-
Prifti, E.1
Zucker, J.D.2
Clement, K.3
Henegar, C.4
-
141
-
-
77950497743
-
EGAN: exploratory gene association networks
-
Paquette J., Tokuyasu T. EGAN: exploratory gene association networks. Bioinformatics 2009, 26:285-286.
-
(2009)
Bioinformatics
, vol.26
, pp. 285-286
-
-
Paquette, J.1
Tokuyasu, T.2
-
142
-
-
58749109023
-
Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes
-
Hruz T., Laule O., Szabo G., Wessendorp F., Bleuler S., Oertle L., Widmayer P., Gruissem W., Zimmermann P. Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv. Bioinform. 2008, 2008:420747.
-
(2008)
Adv. Bioinform.
, vol.2008
, pp. 420747
-
-
Hruz, T.1
Laule, O.2
Szabo, G.3
Wessendorp, F.4
Bleuler, S.5
Oertle, L.6
Widmayer, P.7
Gruissem, W.8
Zimmermann, P.9
-
143
-
-
33747894577
-
TM4 microarray software suite
-
Saeed A.I., Bhagabati N.K., Braisted J.C., Liang W., Sharov V., Howe E.A., Li J., Thiagarajan M., White J.A., Quackenbush J. TM4 microarray software suite. Methods Enzymol. 2006, 411:134-193.
-
(2006)
Methods Enzymol.
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
Howe, E.A.6
Li, J.7
Thiagarajan, M.8
White, J.A.9
Quackenbush, J.10
-
144
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline M.S., Smoot M., Cerami E., Kuchinsky A., Landys N., Workman C., Christmas R., Avila-Campilo I., Creech M., Gross B., Hanspers K., Isserlin R., Kelley R., Killcoyne S., Lotia S., Maere S., Morris J., Ono K., Pavlovic V., Pico A.R., Vailaya A., Wang P.L., Adler A., Conklin B.R., Hood L., Kuiper M., Sander C., Schmulevich I., Schwikowski B., Warner G.J., Ideker T., Bader G.D. Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc. 2007, 2:2366-2382.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
Ideker, T.31
Bader, G.D.32
more..
-
145
-
-
0034214335
-
An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains
-
van Dijken J.P., Bauer J., Brambilla L., Duboc P., Francois J.M., Gancedo C., Giuseppin M.L., Heijnen J.J., Hoare M., Lange H.C., Madden E.A., Niederberger P., Nielsen J., Parrou J.L., Petit T., Porro D., Reuss M., van Riel N., Rizzi M., Steensma H.Y., Verrips C.T., Vindelov J., Pronk J.T. An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains. Enzyme Microb. Technol. 2000, 26:706-714.
-
(2000)
Enzyme Microb. Technol.
, vol.26
, pp. 706-714
-
-
van Dijken, J.P.1
Bauer, J.2
Brambilla, L.3
Duboc, P.4
Francois, J.M.5
Gancedo, C.6
Giuseppin, M.L.7
Heijnen, J.J.8
Hoare, M.9
Lange, H.C.10
Madden, E.A.11
Niederberger, P.12
Nielsen, J.13
Parrou, J.L.14
Petit, T.15
Porro, D.16
Reuss, M.17
van Riel, N.18
Rizzi, M.19
Steensma, H.Y.20
Verrips, C.T.21
Vindelov, J.22
Pronk, J.T.23
more..
-
146
-
-
70749149335
-
ModuleMaster: a new tool to decipher transcriptional regulatory networks
-
Wrzodek C., Schroder A., Drager A., Wanke D., Berendzen K.W., Kronfeld M., Harter K., Zell A. ModuleMaster: a new tool to decipher transcriptional regulatory networks. Biosystems 2010, 99:79-81.
-
(2010)
Biosystems
, vol.99
, pp. 79-81
-
-
Wrzodek, C.1
Schroder, A.2
Drager, A.3
Wanke, D.4
Berendzen, K.W.5
Kronfeld, M.6
Harter, K.7
Zell, A.8
-
147
-
-
70350464126
-
Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa
-
Davey M.W., Graham N.S., Vanholme B., Swennen R., May S.T., Keulemans J. Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa. BMC Genomics 2009, 10:436.
-
(2009)
BMC Genomics
, vol.10
, pp. 436
-
-
Davey, M.W.1
Graham, N.S.2
Vanholme, B.3
Swennen, R.4
May, S.T.5
Keulemans, J.6
-
148
-
-
44249092978
-
Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots
-
Mangelsen E., Kilian J., Berendzen K.W., Kolukisaoglu U.H., Harter K., Jansson C., Wanke D. Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics 2008, 9:194.
-
(2008)
BMC Genomics
, vol.9
, pp. 194
-
-
Mangelsen, E.1
Kilian, J.2
Berendzen, K.W.3
Kolukisaoglu, U.H.4
Harter, K.5
Jansson, C.6
Wanke, D.7
-
149
-
-
33644825186
-
Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis
-
Jiao Y., Ma L., Strickland E., Deng X.W. Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell 2005, 17:3239-3256.
-
(2005)
Plant Cell
, vol.17
, pp. 3239-3256
-
-
Jiao, Y.1
Ma, L.2
Strickland, E.3
Deng, X.W.4
-
150
-
-
67649531708
-
Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage
-
Guo P., Baum M., Grando S., Ceccarelli S., Bai G., Li R., von Korff M., Varshney R.K., Graner A., Valkoun J. Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J. Exp. Bot. 2009, 60:3531-3544.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 3531-3544
-
-
Guo, P.1
Baum, M.2
Grando, S.3
Ceccarelli, S.4
Bai, G.5
Li, R.6
von Korff, M.7
Varshney, R.K.8
Graner, A.9
Valkoun, J.10
-
151
-
-
34247126574
-
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
-
Walia H., Wilson C., Condamine P., Ismail A.M., Xu J., Cui X., Close T.J. Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise. BMC Genomics 2007, 8:87.
-
(2007)
BMC Genomics
, vol.8
, pp. 87
-
-
Walia, H.1
Wilson, C.2
Condamine, P.3
Ismail, A.M.4
Xu, J.5
Cui, X.6
Close, T.J.7
-
152
-
-
44949157882
-
Rice-arsenate interactions in hydroponics: whole genome transcriptional analysis
-
Norton G.J., Lou-Hing D.E., Meharg A.A., Price A.H. Rice-arsenate interactions in hydroponics: whole genome transcriptional analysis. J. Exp. Bot. 2008, 59:2267-2276.
-
(2008)
J. Exp. Bot.
, vol.59
, pp. 2267-2276
-
-
Norton, G.J.1
Lou-Hing, D.E.2
Meharg, A.A.3
Price, A.H.4
-
153
-
-
33745450468
-
Transcriptome analysis of cold acclimation in barley albina and xantha mutants
-
Svensson J.T., Crosatti C., Campoli C., Bassi R., Stanca A.M., Close T.J., Cattivelli L. Transcriptome analysis of cold acclimation in barley albina and xantha mutants. Plant Physiol. 2006, 141:257-270.
-
(2006)
Plant Physiol.
, vol.141
, pp. 257-270
-
-
Svensson, J.T.1
Crosatti, C.2
Campoli, C.3
Bassi, R.4
Stanca, A.M.5
Close, T.J.6
Cattivelli, L.7
-
154
-
-
0033027246
-
Enhanced drought resistance in fructan-producing sugar beet
-
Pilon-Smits E.A.H., Terry N., Sears T., van Dun K. Enhanced drought resistance in fructan-producing sugar beet. Plant Physiol. Biochem. 1999, 37:313-317.
-
(1999)
Plant Physiol. Biochem.
, vol.37
, pp. 313-317
-
-
Pilon-Smits, E.A.H.1
Terry, N.2
Sears, T.3
van Dun, K.4
-
155
-
-
43049173527
-
Transgenic approaches for abiotic stress tolerance in plants: retrospect and prospects
-
Bhatnagar-Mathur P., Vadez V., Sharma K.K. Transgenic approaches for abiotic stress tolerance in plants: retrospect and prospects. Plant Cell Rep. 2008, 27:411-424.
-
(2008)
Plant Cell Rep.
, vol.27
, pp. 411-424
-
-
Bhatnagar-Mathur, P.1
Vadez, V.2
Sharma, K.K.3
-
156
-
-
17044385046
-
Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations
-
Vinocur B., Altman A. Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations. Curr. Opin. Biotechnol. 2005, 16:123-132.
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 123-132
-
-
Vinocur, B.1
Altman, A.2
-
157
-
-
79958064977
-
Challenges in breeding for yield increase for drought
-
Sinclair T.R. Challenges in breeding for yield increase for drought. Trends Plant Sci. 2011, 16:289-293.
-
(2011)
Trends Plant Sci.
, vol.16
, pp. 289-293
-
-
Sinclair, T.R.1
-
158
-
-
77950879029
-
Over-expression of ThpI from Choristoneura fumiferana enhances tolerance to cold in Arabidopsis
-
Zhu B., Xiong A.S., Peng R.H., Xu J., Jin X.F., Meng X.R., Yao Q.H. Over-expression of ThpI from Choristoneura fumiferana enhances tolerance to cold in Arabidopsis. Mol. Biol. Rep. 2010, 37:961-966.
-
(2010)
Mol. Biol. Rep.
, vol.37
, pp. 961-966
-
-
Zhu, B.1
Xiong, A.S.2
Peng, R.H.3
Xu, J.4
Jin, X.F.5
Meng, X.R.6
Yao, Q.H.7
-
159
-
-
77952995692
-
Narrowing down the targets: towards successful genetic engineering of drought-tolerant crops
-
Yang S., Vanderbeld B., Wan J., Huang Y. Narrowing down the targets: towards successful genetic engineering of drought-tolerant crops. Mol. Plant 2010, 3:469-490.
-
(2010)
Mol. Plant
, vol.3
, pp. 469-490
-
-
Yang, S.1
Vanderbeld, B.2
Wan, J.3
Huang, Y.4
|