Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice

BMC Plant Biology

Volumn 9, Issue , 2009, Pages

  Qiu, Deyun ^a   Xiao, Jun ^a   Xie, Weibo ^a   Cheng, Hongtao ^a   Li, Xianghua ^a   Wang, Shiping ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ARTICLE; DNA MICROARRAY; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; PROMOTER REGION; RICE; SIGNAL TRANSDUCTION;

DNA, PLANT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORYZA SATIVA; PLANT PROTEINS; PROMOTER REGIONS, GENETIC; SEQUENCE ANALYSIS, DNA; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 68349154252     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-9-74     Document Type: Article

References (59)

1. WRKY transcription factors: from DNA binding towards biological function. B Ulker IE Somssich, Curr Opin Plant Biol 2004 7 491 498
2. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. Y Zhang L Wang, BMC Evol Biol 2005 5 1 12
3. Targets of AtWRKY6 regulation during plant senescence and pathogen defense. S Robatzek IE Somssich, Genes Dev 2002 16 1139 1149
4. Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor. C Chen Z Chen, Plant Physiol 2002 129 706 716
5. The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. J Li G Brader ET Palva, Plant Cell 2004 16 319 331
6. Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Z Zheng SA Qamar Z Chen T Mengiste, Plant J 2006 48 592 605
7. OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1. XQ Liu XQ Bai Q Qian XJ Wang MS Chen CC Chu, Cell Res 2005 15 593 603
8. OsWRKY71, a rice transcription factor, is involved in rice defense response. X Liu X Bai X Wang C Chu, J Plant Physiol 2007 164 969 979
9. OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling. D Qiu J Xiao X Ding M Xiong M Cai Y Cao X Li C Xu S Wang, Mol Plant Microbe Interact 2007 20 492 499
10. Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance. M Shimono S Sugano A Nakayama CJ Jiang K Ono S Toki H Takatsuji, Plant Cell 2007 19 2064 2076 17601827
11. TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. CS Johnson B Kolevski DR Smyth, Plant Cell 2002 14 1359 1375 12084832
12. MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis. M Luo ES Dennis F Berger WJ Peacock A Chaudhury, Proc Natl Acad Sci USA 2005 102 17531 17536 16293693
13. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Z Xie ZL Zhang X Zou G Yang S Komatsu QJ Shen, Plant J 2006 46 231 242
14. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. ZL Zhang Z Xie X Zou J Casaretto TH Ho QJ Shen, Plant Physiol 2004 134 1500 1513 15047897
15. A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter. C Sun S Palmqvist H Olsson M Boren S Ahlandsberg C Jansson, Plant Cell 2003 15 2076 2092
16. Characterization of GaWRKY1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-delta-cadinene synthase-A. Y Xu J Wang S Wang J Wang X Chen, Plant Physiol 2004 135 507 515
17. Identification of a WRKY protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in Coptis japonica. N Kato E Dubouzet Y Kokabu S Yoshida Y Taniguchi JG Dubouzet K Yazaki F Sato, Plant Cell Physiol 2007 48 8 18
18. The transcriptome of Arabidopsis thaliana during systemic acquired resistance. K Maleck A Levine T Eulgem A Morgan J Schmid KA Lawton JL Dangl RA Dietrich, Nature Genet 2000 26 403 410
19. The WRKY superfamily of plant transcription factors. T Eulgem PJ Rushton S Robatzek IE Somssich, Trends Plant Scie 2000 5 199 206
20. POBO, transcription factor binding site verification with bootstrapping. M Kankainen L Holm, Nucl Acids Res 2004 32 W222 W229
21. The transcriptional innate immune response to flg22: interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. L Navarro C Zipfel O Rowland I Keller S Robatzek T Boller JD Jones, Plant Physiol 2004 135 1113 1128
22. Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance. M Cai D Qiu T Yuan X Ding H Li L Duan C Xu X Li S Wang, Plant Cell Environ 2008 31 86 96
23. A novel WRKY transcription factor is required for induction of PR-1a gene expression by salicylic acid and bacterial elicitors. MC van Verk D Pappaioannou L Neeleman JF Bol HJ Linthorst, Plant Physiol 2008 146 1983 1995 18263781 10.1104/pp.107.112789
24. Consensus by democracy: using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. C Benedict M Geisler J Trygg N Huner V Hurry, Plant Physiol 2006 141 1219 1232
25. Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a relevance vector machine. Y Li KK Lee S Walsh C Smith S Hadingham K Sorefan G Cawley MW Bevan, Genome Res 2006 16 414 427 16424108 10.1101/gr.4237406
26. Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance. D Qiu J Xiao W Xie H Liu X Li L Xiong S Wang, Mol Plant 2008 1 538 551
27. Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. ME Hudson PH Quail, Plant Physiol 2003 133 1605 1616
28. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. K Higo Y Ugawa M Iwamoto T Korenaga, Nucl Acids Res 1999 27 297 300
29. PlantCARE: a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. M Lescot P Déhais Y Moreau B De-Moor P Rouzé S Rombauts, Nucl Acids Res 2002 30 325 327
30. Optimising the tissue culture conditions for high efficiency transformation of indica rice. YJ Lin Q Zhang, Plant Cell Rep 2005 23 540 547
31. New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line. H Chen S Wang Q Zhang, Phytopathology 2002 92 750 754 (Pubitemid 34674251)
32. Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation. G Wang X Ding M Yuan D Qiu X Li C Xu S Wang, Plant Mol Biol 2006 60 437 449
33. Transcription factor families in Arabidopsis: major progress and outstanding issues for future research. LJ Qu YX Zhu, Curr Opin Plant Biol 2006 9 544 549
34. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. H Hu M Dai J Yao B Xiao X Li Q Zhang L Xiong, Proc Natl Acad Sci USA 2006 103 12987 12992
35. Computational approaches to identify promoters and cis-regulatory elements in plant genomes. S Rombauts K Florquin M Lescot K Marchal P Rouzé Y van de Peer, Plant Physiol 2003 132 1162 1176 12857799
36. TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG. U Schindler H Beckmann AR Cashmore, Plant Cell 1992 4 1309 1319 1446171
37. Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. W Chen NJ Provart J Glazebrook F Katagiri HS Chang T Eulgem F Mauch S Luan G Zou SA Whitham PR Budworth Y Tao Z Xie X Chen S Lam JA Kreps JF Harper A Si-Ammour B Mauch-Mani M Heinlein K Kobayashi T Hohn JL Dangl X Wang T Zhu, Plant Cell 2002 14 559 574
38. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. JG Dubouzet Y Sakuma Y Ito M Kasuga EG Dubouzet S Miura M Seki K Shinozaki K Yamaguchi-Shinozaki, Plant J 2003 33 751 76312609047
39. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. K Maruyama Y Sakuma M Kasuga Y Ito M Seki H Goda Y Shimada S Yoshida K Shinozaki K Yamaguchi-Shinozaki, Plant J 2004 38 982 993
40. The tomato transcription factor Pti4 regulates defence-related gene expression via GCC box and non-GCC box cis elements. S Chakravarthy RP Tuori MD D'Ascenzo PR Fobert C Despres GB Martin, Plant Cell 2003 15 3033 3050
41. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. JL Riechmann M Wang EM Meyerowitz, Nucl Acids Res 1996 24 3134
42. Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. LS Tran K Nakashima Y Sakuma SD Simpson Y Fujita K Maruyama M Fujita M Seki K Shinozaki K Yamaguchi-Shinozaki, Plant Cell 2004 16 2481 2498
43. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. R Solano A Stepanova Q Chao JR Ecker, Gene Dev 1998 12 3703 3714
44. Combinatorial interaction of cis elements specifies the expression of the Arabidopsis AtHsp90-1 gene. K Haralampidis D Milioni S Rigas P Hatzopoulos, Plant Physiol 2002 129 1138 1149 12114568
45. Functional analysis of cis-regulatory elements within the promoter of the tobacco late pollen gene g10. HJ Rogers N Bate J Combe J Sullivan J Sweetman C Swan DM Lonsdale D Twell, Plant Mol Biol 2001 45 577 585
46. A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. SA Filichkin JM Leonard A Monteros PP Liu H Nonogaki, Plant Physiol 2004 134 1080 1087 14976239 10.1104/pp.103.035998
47. Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses. H Luo F Song RM Goodman Z Zheng, Plant Biol (Stuttg) 2005 7 459 468
48. A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. J Kropat S Tottey RP Birkenbihl N Depège P Huijser S Merchant, Proc Natl Acad Sci USA 2005 102 18730 18735 16352720 10.1073/pnas.0507693102 (Pubitemid 43011294)
49. Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. SD Simpson K Nakashima Y Narusaka M Seki K Shinozaki K Yamaguchi-Shinozaki, Plant J 2003 33 259 270
50. The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. T Izawa R Foster M Nakajima K Shimamoto NH Chua, Plant Cell 1994 6 1277 1287
51. Diversity and similarity among recognition sequences of Dof transcription factors. S Yanagisawa RJ Schmidt, Plant J 1999 17 209 214
52. A DNA binding activity for one of two closely defined phytochrome regulatory elements in an Lhcb promoter is more abundant in etiolated than in green plants. J Degenhardt EM Tobin, Plant Cell 1996 8 31 41
53. Two cis-acting elements necessary and sufficient for gibberellin- upregulated proteinase expression in rice seeds. K Sutoh D Yamauchi, Plant J 2003 34 635 645 10.1046/j.1365-313X.2003.01753.x 12787245
54. cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene. U Gowik J Burscheidt M Akyildiz U Schlue M Koczor M Streubel P Westhoff, Plant Cell 2004 16 1077 1090
55. Sequences responsible for the tissue-specific promoter activity of a pea legumin gene in tobacco. A Shirsat N Wilford R Croy D Boulter, Mol Gen Genet 1989 215 326 331
56. Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Z Xie ZL Zhang X Zou J Huang P Ruas D Thompson QJ Shen, Plant Physiol 2005 137 176 189
57. Sequence and spacing of TATA box elements are critical for accurate initiation from the beta-phaseolin promoter. ML Grace MB Chandrasekharan TC Hall AJ Crowe, J Biol Chem 2004 279 8102 8110
58. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. I Ciolkowski D Wanke RP Birkenbihl IE Somssich, Plant Mol Biol 2008 68 81 92
59. MAP kinase signalling cascade in Arabidopsis innate immunity. T Asai G Tena J Plotnikova MR Willmann WL Chiu L Gomez-Gomez T Boller FM Ausubel J Sheen, Nature 2002 415 977 983