MIDAW: A web tool for statistical analysis of microarray data

Nucleic Acids Research

Volumn 33, Issue SUPPL. 2, 2005, Pages

  Romualdi, Chiara ^a   Vitulo, Nicola ^a   Del Favero, Micky ^a   Lanfranchi, Gerolamo ^a  

^a UNIVERSITY OF PADOVA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; EXPERIMENTAL DESIGN; GENE EXPRESSION PROFILING; GENE PROBE; GENETIC ALGORITHM; GENETIC DATABASE; GENETIC IDENTIFICATION; GENETIC LINKAGE; GENETIC MARKER; GENETIC TRANSCRIPTION; IMAGE DISPLAY; INFORMATION PROCESSING; INTERNET; MICROARRAY ANALYSIS; PRIORITY JOURNAL; STATISTICAL ANALYSIS; VARIANCE; ALGORITHM; DNA MICROARRAY; METHODOLOGY; NORMAL DISTRIBUTION; BIOINFORMATICS; COMPUTER LANGUAGE; DISCRIMINANT ANALYSIS; GENBANK; GENE IDENTIFICATION;

ALGORITHMS; DATA INTERPRETATION, STATISTICAL; GENE EXPRESSION PROFILING; INTERNET; NORMAL DISTRIBUTION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 23144442350     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki497     Document Type: Article

References (10)

1. Colantuoni,C., Henry,G., Zeger,S. and Pevsner,J. (2002) SNOMAD (Standardization and Normalization of MicroArray Data): Web-accessible gene expression data analysis. Bioinformatics, 18, 1540-1541.
2. Vaquerizas,J.M., Dopazo,J. and Díaz-Uriarte,R. (2004) DNMAD: A web-based diagnosis and normalization for microarray data. Bioinformatics, 20, 3656-3658.
3. Dudoit,S., Gentleman,R.C. and Quackenbush,J. (2003) Open source software for the analysis of microarray data. Biotechniques (Suppl.), 45-51.
4. Herrero,J., Al-Shahrour,F., Díaz-Uriarte,R., Mateos,A., Vaquerizas,J.M., Santoyo,J. and Dopazo,J. (2003) GEPAS: A web-based resource for microarray gene expression data analysis. Nucleic Acids Res., 31, 3461-3467.
5. Gentleman,R.C., Carey,V.J., Bates,D.M., Bolstad,B., Dettling,M., Dudoit,S., Ellis,B., Gautier,L., Ge,Y., Gentry,J. et al. (2004) Bioconductor a software development project. Genome Biol., 5, R80.
6. Yang,Y.H., Dudoit,S., Luu,P., Lin,D.M., Peng,V., Ngai,J. and Speed,T.P. (2002) Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, e15.
7. Troyanskaya,O., Cantor,M., Sherlock,G., Brown,P., Hastie,T., Tibshirani,R., Botstein,D. and Altman,R.B. (2001) Missing value estimation methods for DNA microarrays. Bioinformatics, 17, 520-525.
8. Reiner,A., Yekutieli,D. and Benjamini,Y. (2003) Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics, 19, 368-375.
9. Tusher,V.G., Tibshirani,R. and Chu,G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 98, 5116-5121.
10. Tibshirani,R., Hastie,T., Narasimhan,B. and Chu,G. (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl Acad. Sci. USA, 99, 6567-6572.