A transcriptional timetable of autumn senescence

Genome Biology

Volumn 5, Issue 4, 2004, Pages

  Andersson, Anders ^a   Keskitalo, Johanna ^b   Sjödin, Andreas ^b   Bhalerao, Rupali ^a,b   Sterky, Fredrik ^a   Wissel, Kirsten ^b   Tandre, Karolina ^c   Aspeborg, Henrik ^a   Moyle, Richard ^c   Ohmiya, Yasunori ^c   Bhalerao, Rishikesh ^c   Brunner, Amy ^d   Gustafsson, Petter ^b   Karlsson, Jan ^b   Lundeberg, Joakim ^a   Nilsson, Ove ^c   Sandberg, Göran ^c   Strauss, Steven ^d   Sundberg, Björn ^c   Uhlen, Mathias ^a   Jansson, Stefan ^b   Nilsson, Peter ^a   more..

^a ALBANOVA UNIVERSITY CENTER   (Sweden)

^b UMEÅ UNIVERSITY   (Sweden)

^c Umea Plant Science Center   (Sweden)

^d OREGON STATE UNIVERSITY   (United States)

Author keywords

Additional Data File; Annual Plant; Aspen Tree; Autumn Leaf; Leaf Senescence

Indexed keywords

COMPLEMENTARY DNA; PLANT DNA; PLANT RNA;

AGING; ARTICLE; ASPEN; CELL DEATH; CHRONOBIOLOGY; CYTOLOGY; DNA MICROARRAY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETIC TRANSCRIPTION; GENETICS; METHODOLOGY; PLANT LEAF; SEASON;

AGING; CELL DEATH; CHRONOBIOLOGY; DNA, COMPLEMENTARY; DNA, PLANT; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT LEAVES; POPULUS; RNA, PLANT; SEASONS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC;

EID: 1842619264     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2004-5-4-r24     Document Type: Article

References (31)

1. The virtual library of plant-arrays: Publications[http://www.univ-montp2.fr/~plant_arrays/Plant-Arrays_Publications.html]
2. Sterky F, Regan S, Karlsson J, Hertzberg M, Rohde A, Holmberg A, Amini B, Bhalerao R, Larsson M, Villarroel R, et al.: Gene discovery in the wood-forming tissues of poplar: analysis of 5,692 expressed sequence tags. Proc Natl Acad Sci USA 1998, 95:13330–13335. DOI: 10.1073/pnas.95.22.13330
3. Bhalerao R, Keskitalo J, Sterky F, Erlandsson R, Bjorkbacka H, Birve SJ, Karlsson J, Gardestrom P, Gustafsson P, Lundeberg J, Jansson S: Gene expression in autumn leaves. Plant Physiol 2003, 131:430–442. DOI: 10.1104/pp.012732
4. Hertzberg M, Aspeborg H, Schrader J, Andersson A, Erlandsson R, Blomqvist K, Bhalerao R, Uhlen M, Teeri TT, Lundeberg J, et al.: A transcriptional roadmap to wood formation. Proc Natl Acad Sci USA 2001, 98:14732–14737. DOI: 10.1073/pnas.261293398
5. Olsen JE, Junttila O: Far red end-of-day treatment restores wild type-like plant length in hybrid aspen overexpressing phytochrome A. Physiol Plant 2002, 115:448–457. DOI: 10.1034/j.1399-3054.2002.1150315.x
6. EBI databases: ArrayExpress home[http://www.ebi.ac.uk/arrayexpress]
7. Graham IA, Eastmond PJ: Pathways of straight and branched chain fatty acid catabolism in higher plants. Prog Lipid Res 2002, 41:156–181. DOI: 10.1016/S0163-7827(01)00022-4
8. Kamachi K, Yamaya T, Hayakawa T, Mae T, Ojima K: Vascular bundle-specific localization of cytosolic glutamine synthetase in rice leaves. Plant Physiol 1992, 99:1481–1486. DOI: 10.1104/pp.99.4.1481
9. Wullschleger SD, Jansson S, Taylor G: Genomics and forest biology: Populus emerges as the perennial favorite. Plant Cell 2002, 14:2651–2655. DOI: 10.1105/tpc.141120
10. Wissel K, Pettersson F, Berglund A, Jansson S: What affects mRNA levels in leaves of field-grown aspen? A study of developmental and environmental influence. Plant Physiol 2003, 133:1190–1197. DOI: 10.1104/pp.103.028191
11. Külheim C, Agren J, Jansson S: Rapid regulation of light harvesting and plant fitness in the field. Science 2002, 297:91–93. DOI: 10.1126/science.1072359
12. Quirino BF, Noh YS, Himelblau E, Amasino RM: Molecular aspects of leaf senescence. Trends Plant Sci 2000, 5:278–282. DOI: 10.1016/S1360-1385(00)01655-1
13. Yoshida S: Molecular regulation of leaf senescence. Curr Opin Plant Biol 2003, 6:79–84. DOI: 10.1016/S1369526602000092
14. Finnemann J, Schjoerring JK: Post-translational regulation of cytosolic glutamine synthetase by reversible phosphorylation and 14–3-3 protein interaction. Plant J 2000, 24:171–181. DOI: 10.1046/j.1365-313x.2000.00863.x
15. Ishida H, Anzawa D, Kokubun N, Makino A, Mae T: Direct evidence for non-enzymatic fragmentation of chloroplastic glutamine synthetase by a reactive oxygen species. Plant Cell Env 2002, 25:625–631. DOI: 10.1046/j.1365-3040.2002.00851.x
16. Buchanan-Wollaston V, Earl S, Harrison E, Mathas E, Navabpour S, Page T, Pink D: The molecular analysis of leaf senescence - a genomics approach. Plant Biotech J 2003, 1:3–22. DOI: 10.1046/j.1467-7652.2003.00004.x
17. Adamska I, Roobol-Boza M, Lindahl M, Andersson B: Isolation of pigment-binding early light-inducible proteins from pea. Eur J Biochem 1999, 260:453–460. DOI: 10.1046/j.1432-1327.1999.00178.x
18. Król M, Spangfort MD, Huner NP, Oquist G, Gustafsson P, Jansson S: Chlorophyll a/b-binding proteins, pigment conversions, and early light-induced proteins in a chlorophyll b-less barley mutant. Plant Physiol 1995, 107:873–883. DOI: 10.1104/pp.107.3.873
19. Prochazkova D, Sairam RK, Srivastava GC, Singh DV: Oxidative stress and antioxidant activity as the basis of senescence in maize leaves. Plant Sci 2001, 161:765–771. DOI: 10.1016/S0168-9452(01)00462-9
20. Buchanan-Wollaston V: The molecular biology of leaf senescence. J Exp Bot 1997, 48:181–199. DOI: 10.1093/jxb/48.2.181
21. Smart CM: Gene expression during leaf senescence. New Phytol 1994, 126:419–448. DOI: 10.1111/j.1469-8137.1994.tb04243.x
22. Greenberg JT: Programmed cell death: a way of life for plants. Proc Natl Acad Sci USA 1996, 93:12094–12097. DOI: 10.1073/pnas.93.22.12094
23. Noodén LD, Guiamét JJ, John I: Senescence mechanisms. Physiol Plant 1997, 101:746–653. DOI: 10.1111/j.1399-3054.1997.tb01059.x
24. Danon A, Delorme V, Mailhac N, Gallois P: Plant programmed cell death: a common way to die. Plant Physiol Biochem 2000, 38:647–655. DOI: 10.1016/S0981-9428(00)01178-5
25. Phrap and Phred[http://www.phrap.com]
26. Welcome to PopulusDB[http://poppel.fysbot.umu.se]
27. Ihaka R, Gentleman R: R: A language for data analysis and graphics. J Comput Graph Stat 1996, 5:299–314.
28. com.braju.sma - object-oriented microarray analysis in 100% R[http://www.maths.lth.se/help/R/com.braju.sma]
29. Yang YH, Dudoit S, Luu P, Speed TP: Normalization for cDNA microarray. In Microarrays: Optical Technologies and Informatics (Edited by: Bittner ML, Chen Y, Dorsel AN, Dougherty ER). Bellingham, WA: Society for Optical Engineering (SPIE) 2001.
30. Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, et al.: TM4: a free, open-source system for microarray data management and analysis. Biotechniques 2003, 34:374–378.
31. Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98:5116–5121. DOI: 10.1073/pnas.091062498