메뉴 건너뛰기




Volumn 81, Issue 2, 2012, Pages 131-143

On the choice of prior density for the Bayesian analysis of pedigree structure

Author keywords

Bayesian inference; Minimum Description Length Principle; Pedigree inference

Indexed keywords

BAYESIAN ANALYSIS; DATA SET; GENETIC ANALYSIS;

EID: 84856540684     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2011.12.003     Document Type: Article
Times cited : (6)

References (37)
  • 1
    • 0038620466 scopus 로고    scopus 로고
    • A simulated annealing algorithm for maximum likelihood pedigree reconstruction
    • Almudevar A. A simulated annealing algorithm for maximum likelihood pedigree reconstruction. Theoretical Population Biology 2003, 63:63-75.
    • (2003) Theoretical Population Biology , vol.63 , pp. 63-75
    • Almudevar, A.1
  • 2
    • 33846596160 scopus 로고    scopus 로고
    • A graphical approach to relatedness inference
    • Almudevar A. A graphical approach to relatedness inference. Theoretical Population Biology 2007, 71:213-229.
    • (2007) Theoretical Population Biology , vol.71 , pp. 213-229
    • Almudevar, A.1
  • 3
    • 46749138737 scopus 로고    scopus 로고
    • Efficient coding of labelled graphs
    • In: Information Theory Workshop, 2007, ITW'07, IEEE
    • Almudevar, A., Efficient coding of labelled graphs. In: Information Theory Workshop, 2007, ITW'07, IEEE, 2-6, 2007, pp. 523-528.
    • (2007) , Issue.2-6 , pp. 523-528
    • Almudevar, A.1
  • 4
    • 84856535363 scopus 로고    scopus 로고
    • A new version of PRT software for sibling groups reconstruction with comments regarding several issues in the sibling reconstruction problem
    • (early view)
    • Almudevar A., Anderson E.C. A new version of PRT software for sibling groups reconstruction with comments regarding several issues in the sibling reconstruction problem. Molecular Ecology Resources 2011, (early view).
    • (2011) Molecular Ecology Resources
    • Almudevar, A.1    Anderson, E.C.2
  • 7
    • 84859997108 scopus 로고    scopus 로고
    • Pedagree: software to quantify error and assess accuracy and congruence for genetically reconstructed pedigree relationships
    • Coombs J., Letcher B., Nislow K. Pedagree: software to quantify error and assess accuracy and congruence for genetically reconstructed pedigree relationships. Conservation Genetics Resources 2010, 2:147-150. 10.1007/s12686-010-9202-9.
    • (2010) Conservation Genetics Resources , vol.2 , pp. 147-150
    • Coombs, J.1    Letcher, B.2    Nislow, K.3
  • 8
    • 34249832377 scopus 로고
    • A Bayesian method for the induction of probabilistic networks from data
    • Cooper G.F., Herskovits E. A Bayesian method for the induction of probabilistic networks from data. Machine Learning 1992, 9:309-347.
    • (1992) Machine Learning , vol.9 , pp. 309-347
    • Cooper, G.F.1    Herskovits, E.2
  • 9
    • 70449102681 scopus 로고    scopus 로고
    • Efficient maximum likelihood pedigree reconstruction
    • Cowell R.G. Efficient maximum likelihood pedigree reconstruction. Theoretical Population Biology 2009, 76(4):285-291.
    • (2009) Theoretical Population Biology , vol.76 , Issue.4 , pp. 285-291
    • Cowell, R.G.1
  • 10
    • 29144531645 scopus 로고    scopus 로고
    • Model averaging for prediction with discrete Bayesian networks
    • Dash D., Cooper G.F. Model averaging for prediction with discrete Bayesian networks. Journal of Machine Learning Research 2004, 5:1177-1203.
    • (2004) Journal of Machine Learning Research , vol.5 , pp. 1177-1203
    • Dash, D.1    Cooper, G.F.2
  • 11
    • 0034621283 scopus 로고    scopus 로고
    • Beyond traditional paternity and identification cases: selecting the most probable pedigree
    • Egeland T., Mostad P.F., Mevåg B., Stenersend M. Beyond traditional paternity and identification cases: selecting the most probable pedigree. Forensic Science International 2000, 110:47-59.
    • (2000) Forensic Science International , vol.110 , pp. 47-59
    • Egeland, T.1    Mostad, P.F.2    Mevåg, B.3    Stenersend, M.4
  • 12
    • 49549100459 scopus 로고    scopus 로고
    • Learning causal Bayesian network structures from experimental data
    • Ellis B., Wong W.H. Learning causal Bayesian network structures from experimental data. Journal of the American Statistical Association 2008, 103(482):778-789.
    • (2008) Journal of the American Statistical Association , vol.103 , Issue.482 , pp. 778-789
    • Ellis, B.1    Wong, W.H.2
  • 13
    • 0037262841 scopus 로고    scopus 로고
    • Being Bayesian about network structure: a Bayesian approach to structure discovery in Bayesian networks
    • Friedman N., Koller D. Being Bayesian about network structure: a Bayesian approach to structure discovery in Bayesian networks. Machine Learning 2003, 50:95-125.
    • (2003) Machine Learning , vol.50 , pp. 95-125
    • Friedman, N.1    Koller, D.2
  • 14
    • 20144371321 scopus 로고    scopus 로고
    • How to use molecular marker data to measure evolutionary parameters in wild populations
    • Garant D., Kruuk L.E.B. How to use molecular marker data to measure evolutionary parameters in wild populations. Molecular Ecology 2005, 14:1843-1859.
    • (2005) Molecular Ecology , vol.14 , pp. 1843-1859
    • Garant, D.1    Kruuk, L.E.B.2
  • 15
    • 0001099335 scopus 로고    scopus 로고
    • Decomposable graphical Gaussian model determination
    • Giudici P., Green P.J. Decomposable graphical Gaussian model determination. Biometrika 1999, 86(4):785-801.
    • (1999) Biometrika , vol.86 , Issue.4 , pp. 785-801
    • Giudici, P.1    Green, P.J.2
  • 17
    • 33749824427 scopus 로고    scopus 로고
    • Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework
    • Hadfield J.D., Richardson D.S., Burke T. Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework. Molecular Ecology 2006, 15:3715-3730.
    • (2006) Molecular Ecology , vol.15 , pp. 3715-3730
    • Hadfield, J.D.1    Richardson, D.S.2    Burke, T.3
  • 19
    • 34249761849 scopus 로고
    • Learning Bayesian networks: the combination of knowledge and statistical data
    • Heckerman D., Geiger D., Chickering D.M. Learning Bayesian networks: the combination of knowledge and statistical data. Machine Learning 1995, 20:197-243.
    • (1995) Machine Learning , vol.20 , pp. 197-243
    • Heckerman, D.1    Geiger, D.2    Chickering, D.M.3
  • 20
    • 0033616665 scopus 로고    scopus 로고
    • Early growth performance of Atlantic Salmon full-sib familes reared in single family tanks or in mixed family tanks
    • Herbinger C., O'Reilly P.T., Doyle R.W., Wright J.M., O'Flynn F. Early growth performance of Atlantic Salmon full-sib familes reared in single family tanks or in mixed family tanks. Aquaculture 1999, 173:105-116.
    • (1999) Aquaculture , vol.173 , pp. 105-116
    • Herbinger, C.1    O'Reilly, P.T.2    Doyle, R.W.3    Wright, J.M.4    O'Flynn, F.5
  • 22
    • 77953052426 scopus 로고    scopus 로고
    • Colony: a program for parentage and sibship inference from multilocus genotype data
    • Jones O.R., Wang J. Colony: a program for parentage and sibship inference from multilocus genotype data. Molecular Ecology Resources 2010, 10(3):551-555.
    • (2010) Molecular Ecology Resources , vol.10 , Issue.3 , pp. 551-555
    • Jones, O.R.1    Wang, J.2
  • 23
    • 75649106875 scopus 로고    scopus 로고
    • Molecular marker-based pedigrees for animal conservation biologists
    • Jones O.R., Wang J. Molecular marker-based pedigrees for animal conservation biologists. Animal Conservation 2010, 13:26-34.
    • (2010) Animal Conservation , vol.13 , pp. 26-34
    • Jones, O.R.1    Wang, J.2
  • 26
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confidence for likelihood-based paternity inference in natural populations
    • Marshall T.C., Slate J., Kruuk L.E.B., Pemberton J.M. Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 1998, 7:639-655.
    • (1998) Molecular Ecology , vol.7 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.B.3    Pemberton, J.M.4
  • 28
    • 0034907756 scopus 로고    scopus 로고
    • A Bayesian framework for parentage analysis: the value of genetic and other biological data
    • Neff B.D., Repka J., Gross M.R. A Bayesian framework for parentage analysis: the value of genetic and other biological data. Theoretical Population Biology 2001, 59:315-331.
    • (2001) Theoretical Population Biology , vol.59 , pp. 315-331
    • Neff, B.D.1    Repka, J.2    Gross, M.R.3
  • 29
    • 0035044518 scopus 로고    scopus 로고
    • Statistical approaches to paternity analysis in natural populations and applications to the North Atlantic humpback whale
    • Nielsen R., Mattila D.K., Clapham P.J., Palsbøll P.J. Statistical approaches to paternity analysis in natural populations and applications to the North Atlantic humpback whale. Genetics 2001, 157:1673-1682.
    • (2001) Genetics , vol.157 , pp. 1673-1682
    • Nielsen, R.1    Mattila, D.K.2    Clapham, P.J.3    Palsbøll, P.J.4
  • 30
    • 68549101953 scopus 로고    scopus 로고
    • Franz: reconstruction of wild mult-generation pedigrees
    • Riester M., Stadler P.F., Klemm K. Franz: reconstruction of wild mult-generation pedigrees. Bioinformatics 2009, 25:2134-2139.
    • (2009) Bioinformatics , vol.25 , pp. 2134-2139
    • Riester, M.1    Stadler, P.F.2    Klemm, K.3
  • 32
    • 0018015137 scopus 로고
    • Modeling by the shortest data description
    • Rissanen J. Modeling by the shortest data description. Automatica 1978, 14:465-471.
    • (1978) Automatica , vol.14 , pp. 465-471
    • Rissanen, J.1
  • 33
    • 78249246665 scopus 로고    scopus 로고
    • A scale-free structure prior for graphical models with applications in functional genomics
    • Sheridan P., Kamimura T., Shimodaira H. A scale-free structure prior for graphical models with applications in functional genomics. PLoS One 2010, 5(11):e13580.
    • (2010) PLoS One , vol.5 , Issue.11
    • Sheridan, P.1    Kamimura, T.2    Shimodaira, H.3
  • 34
    • 0034041703 scopus 로고    scopus 로고
    • A retrospective assessment of the accuracy of the paternity inference program cervus
    • Slate J., Marshall T., Pemberton J. A retrospective assessment of the accuracy of the paternity inference program cervus. Molecular Ecology 2000, 9(6):801-808.
    • (2000) Molecular Ecology , vol.9 , Issue.6 , pp. 801-808
    • Slate, J.1    Marshall, T.2    Pemberton, J.3
  • 35
    • 31344466234 scopus 로고    scopus 로고
    • The estimation of genetic relationships using molecular markers and their efficiency in estimating heritability in natural populations
    • Thomas S.C. The estimation of genetic relationships using molecular markers and their efficiency in estimating heritability in natural populations. Philosophical Transactions of the Royal Society, Series B 2005, 360:1457-1467.
    • (2005) Philosophical Transactions of the Royal Society, Series B , vol.360 , pp. 1457-1467
    • Thomas, S.C.1
  • 36
    • 77951154678 scopus 로고    scopus 로고
    • Comparing parentage inference software: reanalysis of a red deer pedigree
    • Walling C.A., Pemperton J.M., Hadfield J.D., Kruuk L.E.B. Comparing parentage inference software: reanalysis of a red deer pedigree. Molecular Ecology 2010, 19(9):1914-1928.
    • (2010) Molecular Ecology , vol.19 , Issue.9 , pp. 1914-1928
    • Walling, C.A.1    Pemperton, J.M.2    Hadfield, J.D.3    Kruuk, L.E.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.