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Volumn 78, Issue 2, 2010, Pages 109-117

Reconstruction of pedigrees in clonal plant populations

Author keywords

Clonal; MCMC; Microsatellite; Parentage; Pedigree; Selfing; SNP

Indexed keywords

ACCURACY ASSESSMENT; ALGORITHM; ANCESTRY; AUTOGAMY; BAYESIAN ANALYSIS; CLONAL ORGANISM; DATA SET; GENETIC MARKER; MARKOV CHAIN; MONTE CARLO ANALYSIS; PARENTAGE; PLANT; POLYMORPHISM; RECONSTRUCTION; SAMPLING; SOFTWARE;

EID: 77955282218     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2010.05.002     Document Type: Article
Times cited : (7)

References (41)
  • 2
    • 0027095294 scopus 로고
    • Using paternity analysis to measure effective pollen dispersal in plant populations
    • Adams W.T., Griffin A.R., Moran G.F. Using paternity analysis to measure effective pollen dispersal in plant populations. Am. Nat. 1992, 140(5):762-780.
    • (1992) Am. Nat. , vol.140 , Issue.5 , pp. 762-780
    • Adams, W.T.1    Griffin, A.R.2    Moran, G.F.3
  • 3
    • 55849117783 scopus 로고    scopus 로고
    • Can clone size serve as a proxy for clone age? An exploration using microsatellite divergence in Populus tremuloides
    • Ally D., Ritland K., Otto S.P. Can clone size serve as a proxy for clone age? An exploration using microsatellite divergence in Populus tremuloides. Mol. Ecol. 2008, 17(22):4897-4911.
    • (2008) Mol. Ecol. , vol.17 , Issue.22 , pp. 4897-4911
    • Ally, D.1    Ritland, K.2    Otto, S.P.3
  • 4
    • 0038620466 scopus 로고    scopus 로고
    • A simulated annealing algorithm for maximum likelihood pedigree reconstruction
    • Almudevar A. A simulated annealing algorithm for maximum likelihood pedigree reconstruction. Theor. Popul. Biol. 2003, 63:63-75.
    • (2003) Theor. Popul. Biol. , vol.63 , pp. 63-75
    • Almudevar, A.1
  • 5
    • 33846596160 scopus 로고    scopus 로고
    • A graphical approach to relatedness inference
    • Almudevar A. A graphical approach to relatedness inference. Theor. Popul. Biol. 2007, 71(2):213-229.
    • (2007) Theor. Popul. Biol. , vol.71 , Issue.2 , pp. 213-229
    • Almudevar, A.1
  • 6
    • 33646199882 scopus 로고    scopus 로고
    • The power of single-nucleotide polymorphisms for large-scale parentage inference
    • Anderson E.C., Garza J.C. The power of single-nucleotide polymorphisms for large-scale parentage inference. Genetics 2006, 172(4):2567-2582.
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2567-2582
    • Anderson, E.C.1    Garza, J.C.2
  • 7
    • 0030303612 scopus 로고    scopus 로고
    • Mating patterns and pollen dispersal in a natural knobcone pine (Pinus attenuate Lemmon.) stand
    • Burczyk J., Adams W.T., Shimizu J.Y. Mating patterns and pollen dispersal in a natural knobcone pine (Pinus attenuate Lemmon.) stand. Heredity 1996, 77:251-260.
    • (1996) Heredity , vol.77 , pp. 251-260
    • Burczyk, J.1    Adams, W.T.2    Shimizu, J.Y.3
  • 8
    • 0036811155 scopus 로고    scopus 로고
    • On a misconception about irreducibility of the single-site gibbs sampler in a pedigree application
    • Cannings C., Sheehan N.A. On a misconception about irreducibility of the single-site gibbs sampler in a pedigree application. Genetics 2002, 162(2):993-996.
    • (2002) Genetics , vol.162 , Issue.2 , pp. 993-996
    • Cannings, C.1    Sheehan, N.A.2
  • 9
    • 0036881896 scopus 로고    scopus 로고
    • Parente: computer program for parentage analysis
    • Cercueil A., Bellemain E., Manel S. Parente: computer program for parentage analysis. J. Hered. 2002, 93(6):458-459.
    • (2002) J. Hered. , vol.93 , Issue.6 , pp. 458-459
    • Cercueil, A.1    Bellemain, E.2    Manel, S.3
  • 10
    • 70449102681 scopus 로고    scopus 로고
    • Efficient maximum likelihood pedigree reconstruction
    • Cowell R.G. Efficient maximum likelihood pedigree reconstruction. Theor. Popul. Biol. 2009, 76(4):285-291.
    • (2009) Theor. Popul. Biol. , vol.76 , Issue.4 , pp. 285-291
    • Cowell, R.G.1
  • 11
    • 34250223110 scopus 로고    scopus 로고
    • Reliable selfing rate estimates from imperfect population genetic data
    • David P., Pujol B., Viard F., Castella V., Goudet J. Reliable selfing rate estimates from imperfect population genetic data. Mol. Ecol. 2007, 16(12):2474-2487.
    • (2007) Mol. Ecol. , vol.16 , Issue.12 , pp. 2474-2487
    • David, P.1    Pujol, B.2    Viard, F.3    Castella, V.4    Goudet, J.5
  • 12
    • 4544315553 scopus 로고    scopus 로고
    • Clonal reproduction and linkage disequilibrium in diploids: a simulation study
    • de MeeÛx00FB;s T., Balloux F. Clonal reproduction and linkage disequilibrium in diploids: a simulation study. Infect. Genet. Evol. 2004, 4(4):345-351.
    • (2004) Infect. Genet. Evol. , vol.4 , Issue.4 , pp. 345-351
    • de MeeÛx00FB1    s, T.2    Balloux, F.3
  • 13
    • 0022226034 scopus 로고
    • Interpopulation gene flow in Raphanus sativus
    • Ellstrand N.C., Marshall D.L. Interpopulation gene flow in Raphanus sativus. Am. Nat. 1985, 126:606-616.
    • (1985) Am. Nat. , vol.126 , pp. 606-616
    • Ellstrand, N.C.1    Marshall, D.L.2
  • 14
    • 0041874734 scopus 로고    scopus 로고
    • FaMoz: a software for parentage analysis using dominant, codominant and uniparentally inherited markers
    • Gerber S., Chabrier P., Kremer A. FaMoz: a software for parentage analysis using dominant, codominant and uniparentally inherited markers. Mol. Ecol. Notes 2003, 3(3):479-481.
    • (2003) Mol. Ecol. Notes , vol.3 , Issue.3 , pp. 479-481
    • Gerber, S.1    Chabrier, P.2    Kremer, A.3
  • 15
    • 0002795650 scopus 로고
    • Markov chain Monte Carlo maximum likelihood. In: Computing Science and Statistics: Proceedings of 23rd Symposium on the Interface Interface Foundation, Fairfax Station.
    • Geyer, C.J., 1991. Markov chain Monte Carlo maximum likelihood. In: Computing Science and Statistics: Proceedings of 23rd Symposium on the Interface Interface Foundation, Fairfax Station, pp. 156-163.
    • (1991) , pp. 156-163
    • Geyer, C.J.1
  • 16
    • 0038225707 scopus 로고    scopus 로고
    • Prospects for inferring pairwise relationships with single nucleotide polymorphisms
    • Glaubitz J.C., Rhodes O.E., Dewoody J.A. Prospects for inferring pairwise relationships with single nucleotide polymorphisms. Mol. Ecol. 2003, 12(4):1039-1047.
    • (2003) Mol. Ecol. , vol.12 , Issue.4 , pp. 1039-1047
    • Glaubitz, J.C.1    Rhodes, O.E.2    Dewoody, J.A.3
  • 17
    • 33749824427 scopus 로고    scopus 로고
    • Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework
    • Hadfield J.D., Richardson D.S., Burke T. Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework. Mol. Ecol. 2006, 15:3715-3730.
    • (2006) Mol. Ecol. , vol.15 , pp. 3715-3730
    • Hadfield, J.D.1    Richardson, D.S.2    Burke, T.3
  • 18
    • 0031433288 scopus 로고    scopus 로고
    • Comparisons of three probability formulae for parentage exclusion
    • Jamieson A., Taylor S. Comparisons of three probability formulae for parentage exclusion. Anim. Genet. 1997, 28:397-400.
    • (1997) Anim. Genet. , vol.28 , pp. 397-400
    • Jamieson, A.1    Taylor, S.2
  • 19
    • 41149118482 scopus 로고    scopus 로고
    • Quantifying inbreeding in natural populations of hermaphroditic organisms
    • Jarne P., David P. Quantifying inbreeding in natural populations of hermaphroditic organisms. Heredity 2008, 100(4):431-439.
    • (2008) Heredity , vol.100 , Issue.4 , pp. 431-439
    • Jarne, P.1    David, P.2
  • 20
    • 33847074909 scopus 로고    scopus 로고
    • Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
    • Kalinowski S.T., Taper M.L., Marshall T.C. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 2007, 16:1099-1106.
    • (2007) Mol. Ecol. , vol.16 , pp. 1099-1106
    • Kalinowski, S.T.1    Taper, M.L.2    Marshall, T.C.3
  • 21
    • 53749103995 scopus 로고    scopus 로고
    • Pedigree reconstruction in wild cichlid fish populations
    • Koch M., Hadfield J.D., Sefc K.M., Sturmbauer C. Pedigree reconstruction in wild cichlid fish populations. Mol. Ecol. 2008, 17(20):4500-4511.
    • (2008) Mol. Ecol. , vol.17 , Issue.20 , pp. 4500-4511
    • Koch, M.1    Hadfield, J.D.2    Sefc, K.M.3    Sturmbauer, C.4
  • 22
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confidence for likelihood-based paternity inference in natural populations
    • Marshall T.C., Slate J., Kruuk L.E., Pemberton J.M. Statistical confidence for likelihood-based paternity inference in natural populations. Mol. Ecol. 1998, 7:639-655.
    • (1998) Mol. Ecol. , vol.7 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.3    Pemberton, J.M.4
  • 24
    • 0026269464 scopus 로고
    • Analysis of paternity within a natural population of Chamaelirium luteum. II. Patterns of male reproductive success
    • Meagher T.R. Analysis of paternity within a natural population of Chamaelirium luteum. II. Patterns of male reproductive success. Am. Nat. 1991, 137(6):738-752.
    • (1991) Am. Nat. , vol.137 , Issue.6 , pp. 738-752
    • Meagher, T.R.1
  • 26
    • 38249041969 scopus 로고
    • The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction
    • Meagher T.R., Thompson E.A. The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction. Theor. Popul. Biol. 1986, 29(1):87-106.
    • (1986) Theor. Popul. Biol. , vol.29 , Issue.1 , pp. 87-106
    • Meagher, T.R.1    Thompson, E.A.2
  • 27
    • 0023480256 scopus 로고
    • Analysis of parentage for naturally established seedlings of Chamaelirium luteum (Liliaceae)
    • Meagher T.R., Thompson E.A. Analysis of parentage for naturally established seedlings of Chamaelirium luteum (Liliaceae). Ecology 1987, 68(4):803-812.
    • (1987) Ecology , vol.68 , Issue.4 , pp. 803-812
    • Meagher, T.R.1    Thompson, E.A.2
  • 28
    • 0035097901 scopus 로고    scopus 로고
    • Using genetic markers to directly estimate male selection gradients
    • Morgan M.T., Conner J.K. Using genetic markers to directly estimate male selection gradients. Evolution 2001, 55(2):272-281.
    • (2001) Evolution , vol.55 , Issue.2 , pp. 272-281
    • Morgan, M.T.1    Conner, J.K.2
  • 29
    • 0035044518 scopus 로고    scopus 로고
    • Statistical approaches to paternity analysis in natural populations and applications to the North Atlantic humpback whale
    • Nielsen R., Mattila D., Clapham P., Palsbøll P. Statistical approaches to paternity analysis in natural populations and applications to the North Atlantic humpback whale. Genetics 2001, 157:1673-1682.
    • (2001) Genetics , vol.157 , pp. 1673-1682
    • Nielsen, R.1    Mattila, D.2    Clapham, P.3    Palsbøll, P.4
  • 31
    • 68549101953 scopus 로고    scopus 로고
    • FRANz: reconstruction of wild multi-generation pedigrees
    • Riester M., Stadler P.F., Klemm K. FRANz: reconstruction of wild multi-generation pedigrees. Bioinformatics 2009, 25(16):2134-2139.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2134-2139
    • Riester, M.1    Stadler, P.F.2    Klemm, K.3
  • 32
    • 84966167686 scopus 로고
    • A model for the estimation of outcrossing rate and gene frequencies using n independent loci
    • Ritland K., Jain S. A model for the estimation of outcrossing rate and gene frequencies using n independent loci. Heredity 1981, 47(1):35-52.
    • (1981) Heredity , vol.47 , Issue.1 , pp. 35-52
    • Ritland, K.1    Jain, S.2
  • 33
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux
    • Roussett F. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Resour. 2008, 8(1):103-106.
    • (2008) Mol. Ecol. Resour. , vol.8 , Issue.1 , pp. 103-106
    • Roussett, F.1
  • 34
    • 0027205090 scopus 로고
    • On the irreducibility of a Markov chain defined on a space of genotype configurations by a sampling scheme
    • Sheehan N., Thomas A. On the irreducibility of a Markov chain defined on a space of genotype configurations by a sampling scheme. Biometrics 1993, 49(1):163-175.
    • (1993) Biometrics , vol.49 , Issue.1 , pp. 163-175
    • Sheehan, N.1    Thomas, A.2
  • 36
    • 0028010724 scopus 로고
    • Genetic analysis of male reproductive contributions in Chamaelirium luteum (L.) Gray (Liliaceae)
    • Smouse P.E., Meagher T.R. Genetic analysis of male reproductive contributions in Chamaelirium luteum (L.) Gray (Liliaceae). Genetics 1994, 136(1):313-322.
    • (1994) Genetics , vol.136 , Issue.1 , pp. 313-322
    • Smouse, P.E.1    Meagher, T.R.2
  • 37
    • 0032743012 scopus 로고    scopus 로고
    • Parentage analysis in Chamaelirium luteum (L.) Gray (Liliaceae): why do some males have higher reproductive contributions?
    • Smouse P.E., Meagher T.R., Kobak C.J. Parentage analysis in Chamaelirium luteum (L.) Gray (Liliaceae): why do some males have higher reproductive contributions?. J. Evol. Biol. 1999, 12(6):1069-1077.
    • (1999) J. Evol. Biol. , vol.12 , Issue.6 , pp. 1069-1077
    • Smouse, P.E.1    Meagher, T.R.2    Kobak, C.J.3
  • 39
    • 34547207025 scopus 로고    scopus 로고
    • Parentage and sibship exclusions: higher statistical power with more family members
    • Wang J. Parentage and sibship exclusions: higher statistical power with more family members. Heredity 2007, 99(2):205-217.
    • (2007) Heredity , vol.99 , Issue.2 , pp. 205-217
    • Wang, J.1
  • 40
    • 34848827879 scopus 로고    scopus 로고
    • A markov chain monte carlo strategy for sampling from the joint posterior distribution of pedigrees and population parameters under a fisher-wright model with partial selfing
    • Wilson I.J., Dawson K.J. A markov chain monte carlo strategy for sampling from the joint posterior distribution of pedigrees and population parameters under a fisher-wright model with partial selfing. Theor. Popul. Biol. 2007, 72(3):436-458.
    • (2007) Theor. Popul. Biol. , vol.72 , Issue.3 , pp. 436-458
    • Wilson, I.J.1    Dawson, K.J.2
  • 41
    • 1542288910 scopus 로고    scopus 로고
    • Selection on floral characters in natural Spanish populations of Silene latifolia
    • Wright J.W., Meagher T.R. Selection on floral characters in natural Spanish populations of Silene latifolia. J. Evol. Biol. 2004, 17(2):382-395.
    • (2004) J. Evol. Biol. , vol.17 , Issue.2 , pp. 382-395
    • Wright, J.W.1    Meagher, T.R.2


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