-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal, F., Zardoya, R. and Posada, D. (2005). ProtTest: Selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
0033795404
-
Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum
-
Anderson, T. J., Haubold, B., Williams, J. T., Estrada-Franco, J. G., Richardson, L., Mollinedo, R., Bockarie, M., Mokili, J., Mharakurwa, S., French, N., Whitworth, J., Velez, I. D., Brockman, A. H., Nosten, F., Ferreira, M. U. and Day, K. P. (2000). Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Molecular Biology and Evolution 17, 1467-1482.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 1467-1482
-
-
Anderson, T.J.1
Haubold, B.2
Williams, J.T.3
Estrada-Franco, J.G.4
Richardson, L.5
Mollinedo, R.6
Bockarie, M.7
Mokili, J.8
Mharakurwa, S.9
French, N.10
Whitworth, J.11
Velez, I.D.12
Brockman, A.H.13
Nosten, F.14
Ferreira, M.U.15
Day, K.P.16
-
3
-
-
0035546072
-
Genome-wide variation in the human and fruitfly: A comparison
-
Aquadro, C. F., Dumont, V. B. and Reed, F. A. (2001). Genome-wide variation in the human and fruitfly: a comparison. Current Opinion in Genetics and Development 11, 627-634.
-
(2001)
Current Opinion in Genetics and Development
, vol.11
, pp. 627-634
-
-
Aquadro, C.F.1
Dumont, V.B.2
Reed, F.A.3
-
5
-
-
43249086697
-
Analysis of chimpanzee history based on genome sequence alignments
-
Caswell, J., Mallick, S., Richter, D. J., Neubauer, J., Schirmer, C., Gnerre, S. and Reich, D. (2008). Analysis of chimpanzee history based on genome sequence alignments. PLoS Genetics 4, e1000057.
-
(2008)
PLoS Genetics
, vol.4
-
-
Caswell, J.1
Mallick, S.2
Richter, D.J.3
Neubauer, J.4
Schirmer, C.5
Gnerre, S.6
Reich, D.7
-
6
-
-
39449088243
-
Plasmodium knowlesi malaria in humans is widely distributed and potentially life threatening
-
Cox-Singh, J., Davis, T. M., Lee, K. S., Shamsul, S. S., Matusop, A., Ratnam, S., Rahman, H. A., Conway, D. J. and Singh, B. (2008). Plasmodium knowlesi malaria in humans is widely distributed and potentially life threatening. Clinical Infectious Diseases 46, 165-171.
-
(2008)
Clinical Infectious Diseases
, vol.46
, pp. 165-171
-
-
Cox-Singh, J.1
Davis, T.M.2
Lee, K.S.3
Shamsul, S.S.4
Matusop, A.5
Ratnam, S.6
Rahman, H.A.7
Conway, D.J.8
Singh, B.9
-
7
-
-
42049083799
-
Saturation and base composition bias explain phylogenomic conflict in Plasmodium
-
Dávalos, L. M. and Perkins, S. L. (2008). Saturation and base composition bias explain phylogenomic conflict in Plasmodium. Genomics 91, 433-442.
-
(2008)
Genomics
, vol.91
, pp. 433-442
-
-
Dávalos, L.M.1
Perkins, S.L.2
-
8
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A. J. and Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7, 214.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
9
-
-
77953801740
-
African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus
-
Duval, L., Fourment, M., Nerrienet, E., Rousset, D., Sadeuh, S. A., Goodman, S. M., Andriaholinirina, N. V., Randrianarivelojosia, M., Paul, R. E., Robert, V., Ayala, F. J. and Ariey, F. (2010). African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus. Proceedings of the National Academy of Sciences, USA 107, 10561-10566.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 10561-10566
-
-
Duval, L.1
Fourment, M.2
Nerrienet, E.3
Rousset, D.4
Sadeuh, S.A.5
Goodman, S.M.6
Andriaholinirina, N.V.7
Randrianarivelojosia, M.8
Paul, R.E.9
Robert, V.10
Ayala, F.J.11
Ariey, F.12
-
10
-
-
60849091045
-
IDEA: Interactive display for evolutionary analyses
-
Egan, A., Mahurkar, A., Crabtree, J., Badger, J. H., Carlton, J. M. and Silva, J. C. (2008). IDEA: Interactive Display for Evolutionary Analyses. BMC Bioinformatics 9, 524.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 524
-
-
Egan, A.1
Mahurkar, A.2
Crabtree, J.3
Badger, J.H.4
Carlton, J.M.5
Silva, J.C.6
-
11
-
-
0028113391
-
Phylogeny of the malarial genus Plasmodium, derived fromrRNA gene sequences
-
Escalante, A. A. and Ayala, F. J. (1994). Phylogeny of the malarial genus Plasmodium, derived fromrRNA gene sequences. Proceedings of the National Academy of Sciences, USA 91, 11373-11377.
-
(1994)
Proceedings of the National Academy of Sciences, USA
, vol.91
, pp. 11373-11377
-
-
Escalante, A.A.1
Ayala, F.J.2
-
12
-
-
13844313937
-
A monkey's tale: The origin of Plasmodium vivax as a human malaria parasite
-
Escalante, A. A., Cornejo, O. E., Freeland, D. E., Poe, A. C., Durrego, E., Collins, W. E. and Lal, A. A. (2005). A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite. Proceedings of the National Academy of Sciences, USA 102, 1980-1985.
-
(2005)
Proceedings of the National Academy of Sciences, USA
, vol.102
, pp. 1980-1985
-
-
Escalante, A.A.1
Cornejo, O.E.2
Freeland, D.E.3
Poe, A.C.4
Durrego, E.5
Collins, W.E.6
Lal, A.A.7
-
13
-
-
0032493346
-
The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome
-
Escalante, A. A., Freeland, D. E., Collins, W. E. and Lal, A. A. (1998). The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proceedings of the National Academy of Sciences, USA 95, 8124-8129.
-
(1998)
Proceedings of the National Academy of Sciences, USA
, vol.95
, pp. 8124-8129
-
-
Escalante, A.A.1
Freeland, D.E.2
Collins, W.E.3
Lal, A.A.4
-
14
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
15
-
-
67651163808
-
Patterns of co-speciation and host switching in primate malaria parasites
-
Garamszegi, L. Z. (2009). Patterns of co-speciation and host switching in primate malaria parasites. Malaria Journal 8, 110.
-
(2009)
Malaria Journal
, vol.8
, pp. 110
-
-
Garamszegi, L.Z.1
-
16
-
-
0037357461
-
Estimation of divergence times for major lineages of primate species
-
Glazko, G. V. and Nei, M. (2003). Estimation of divergence times for major lineages of primate species. Molecular Biology and Evolution 20, 424-434.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 424-434
-
-
Glazko, G.V.1
Nei, M.2
-
17
-
-
0000958812
-
Can Uganda's gorillas survive? - A survey of the Bwindi Forest Reserve
-
Harcourt, A. H. (1981). Can Uganda's gorillas survive? - A survey of the Bwindi Forest Reserve. Biological Conservation 19, 269-282.
-
(1981)
Biological Conservation
, vol.19
, pp. 269-282
-
-
Harcourt, A.H.1
-
18
-
-
52449107804
-
Big bang in the evolution of extant malaria parasites
-
Hayakawa, T., Culleton, R., Otani, H., Horii, T. and Tanabe, K. (2008). Big bang in the evolution of extant malaria parasites. Molecular Biology and Evolution 25, 2233-2239.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 2233-2239
-
-
Hayakawa, T.1
Culleton, R.2
Otani, H.3
Horii, T.4
Tanabe, K.5
-
19
-
-
70349657718
-
Rodents (Rodentia)
-
(ed. Hedges, S. B. and Kumar, S.), Oxford University Press, New York
-
Honeycutt, R. L. (2009). Rodents (Rodentia). In The Timetree of Life (ed. Hedges, S. B. and Kumar, S.), pp. 490-494. Oxford University Press, New York.
-
(2009)
The Timetree of Life
, pp. 490-494
-
-
Honeycutt, R.L.1
-
20
-
-
34548602874
-
Gorillas on the list
-
Hopkin, M. (2007). Gorillas on the list. Nature 449, 127.
-
(2007)
Nature
, vol.449
, pp. 127
-
-
Hopkin, M.1
-
21
-
-
33744486308
-
Incorporating a rapid-impact package for neglected tropical diseases with programs for HIV/AIDS, tuberculosis, and malaria
-
Hotez, P. J., Molyneux, D. H., Fenwick, A., Ottesen, E., Ehrlich Sachs, S. and Sachs, J. D. (2006). Incorporating a rapid-impact package for neglected tropical diseases with programs for HIV/AIDS, tuberculosis, and malaria. PLoS Medicine 3, e102.
-
(2006)
PLoS Medicine
, vol.3
-
-
Hotez, P.J.1
Molyneux, D.H.2
Fenwick, A.3
Ottesen, E.4
Ehrlich Sachs, S.5
Sachs, J.D.6
-
22
-
-
33845793082
-
Homologous recombination and the pattern of nucleotide substitution in Ehrlichia ruminantium
-
Hughes, A. L., and French, J. O. (2007). Homologous recombination and the pattern of nucleotide substitution in Ehrlichia ruminantium. Gene 387, 31-37.
-
(2007)
Gene
, vol.387
, pp. 31-37
-
-
Hughes, A.L.1
French, J.O.2
-
23
-
-
0025029143
-
Evolutionary relationships of class II major-histocompatibilitycomplex genes in mammals
-
Hughes, A. L. and Nei, M. (1990). Evolutionary relationships of class II major-histocompatibilitycomplex genes in mammals. Molecular Biology and Evolution 7, 491-514.
-
(1990)
Molecular Biology and Evolution
, vol.7
, pp. 491-514
-
-
Hughes, A.L.1
Nei, M.2
-
24
-
-
0035823291
-
Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum
-
Hughes, A. L. and Verra, F. (2001). Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum. Proceedings of the Royal Society of London B 268, 1855-1860.
-
(2001)
Proceedings of the Royal Society of London B
, vol.268
, pp. 1855-1860
-
-
Hughes, A.L.1
Verra, F.2
-
25
-
-
0036698225
-
Extensive polymorphism and ancient origin of Plasmodium falciparum
-
Hughes, A. L. and Verra, F. (2002). Extensive polymorphism and ancient origin of Plasmodium falciparum. Trends in Parasitology 18, 348-351.
-
(2002)
Trends in Parasitology
, vol.18
, pp. 348-351
-
-
Hughes, A.L.1
Verra, F.2
-
26
-
-
77956231682
-
Malaria parasite sequences from chimpanzee support the co-speciation hypothesis for the origin of virulent human malaria (Plasmodium falciparum)
-
Hughes, A. L. and Verra, F. (2010). Malaria parasite sequences from chimpanzee support the co-speciation hypothesis for the origin of virulent human malaria (Plasmodium falciparum). Molecular Phylogenetics and Evolution 57, 135-143.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.57
, pp. 135-143
-
-
Hughes, A.L.1
Verra, F.2
-
28
-
-
25444503224
-
Mitochondrial genome sequences support ancient population expansion in Plasmodium vivax
-
Jongwutiwes, S., Putaporntip, C., Iwasaki, T., Ferreira, M. U., Kanbara, H. and Hughes, A. L. (2005). Mitochondrial genome sequences support ancient population expansion in Plasmodium vivax. Molecular Biology and Evolution 22, 1733-1739.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1733-1739
-
-
Jongwutiwes, S.1
Putaporntip, C.2
Iwasaki, T.3
Ferreira, M.U.4
Kanbara, H.5
Hughes, A.L.6
-
29
-
-
0037432740
-
Early origin and recent expansion of Plasmodium falciparum
-
Joy, D. A., Feng, X., Mu, J., Furuya, F., Chotivanich, K., Krettli, A. U., Ho, M., Wang, A., White, N. J., Suh, E., Beerli, P., and Su, X. (2003). Early origin and recent expansion of Plasmodium falciparum. Science 300, 318-321.
-
(2003)
Science
, vol.300
, pp. 318-321
-
-
Joy, D.A.1
Feng, X.2
Mu, J.3
Furuya, F.4
Chotivanich, K.5
Krettli, A.U.6
Ho, M.7
Wang, A.8
White, N.J.9
Suh, E.10
Beerli, P.11
Su, X.12
-
30
-
-
77952382039
-
That was then but this is now: Malaria research in the time of an eradication agenda
-
Kappe, S. H., Vaughn, A. M., Boddey, J. A. and Cowman, A. F. (2010). That was then but this is now: malaria research in the time of an eradication agenda. Science 328, 862-866.
-
(2010)
Science
, vol.328
, pp. 862-866
-
-
Kappe, S.H.1
Vaughn, A.M.2
Boddey, J.A.3
Cowman, A.F.4
-
31
-
-
0014372912
-
Malaria parasites of Thamnomys rutilans (Rodentia, Muridae) in Nigeria
-
Killick-Kendrick, R. (1968). Malaria parasites of Thamnomys rutilans (Rodentia, Muridae) in Nigeria. Bulletin of the World Health Organization 38, 822-824.
-
(1968)
Bulletin of the World Health Organization
, vol.38
, pp. 822-824
-
-
Killick-Kendrick, R.1
-
32
-
-
77649266431
-
On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos
-
Krief, S., Escalante, A. A., Pacheco, M. A., Mugisha, L., Andre, C., Halbwax, M., Fischer, A., Krief, J. M., Kasenene, J. M., Crandfield, M., Cornejo, O. E., Chavatte, J. M., Lin, C., Letourneur, F., Gruner, A. C., McCutchan, T. F., Renia, L. and Snounou, G. (2010). On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos. PLoS Pathogens 6, e1000765.
-
(2010)
PLoS Pathogens
, vol.6
-
-
Krief, S.1
Escalante, A.A.2
Pacheco, M.A.3
Mugisha, L.4
Andre, C.5
Halbwax, M.6
Fischer, A.7
Krief, J.M.8
Kasenene, J.M.9
Crandfield, M.10
Cornejo, O.E.11
Chavatte, J.M.12
Lin, C.13
Letourneur, F.14
Gruner, A.C.15
McCutchan, T.F.16
Renia, L.17
Snounou, G.18
-
33
-
-
34250753191
-
Virulence and resistance in malaria: Who drives the outcome of the infection?
-
Lefevre, T., Sanchez, M., Ponton, F., Hughes, D. and Thomas, F. (2007). Virulence and resistance in malaria: who drives the outcome of the infection? Trends in Parasitology 23, 299-302.
-
(2007)
Trends in Parasitology
, vol.23
, pp. 299-302
-
-
Lefevre, T.1
Sanchez, M.2
Ponton, F.3
Hughes, D.4
Thomas, F.5
-
35
-
-
0026053092
-
Low nucleotide diversity in man
-
Li, W.-H. and Sadler, L. A. (1991). Low nucleotide diversity in man. Genetics 129, 513-523.
-
(1991)
Genetics
, vol.129
, pp. 513-523
-
-
Li, W.-H.1
Sadler, L.A.2
-
36
-
-
77957134091
-
Origin of the human malaria parasite Plasmodium falciparum in gorillas
-
Liu, W., Li, Y., Learn, G. H., Rudicell, R. S., Robertson, J. D., Keele, B. F., Ndjango, J.-B. N., Sanz, C. M., Morgan, D. B., Locatelli, S., Gonder, M. K., Kranzusch, P. J., Walsh, P. D., Delaporte, E., Mpoudi-Ngole, E., Georgiev, A. V., Müller, M. N., Shaw, G. M., Peeters, M., Sharp, P. M., Rayner, J. C. and Hahn, B. H. (2010). Origin of the human malaria parasite Plasmodium falciparum in gorillas. Nature 467, 420-425.
-
(2010)
Nature
, vol.467
, pp. 420-425
-
-
Liu, W.1
Li, Y.2
Learn, G.H.3
Rudicell, R.S.4
Robertson, J.D.5
Keele, B.F.6
Ndjango, J.-B.N.7
Sanz, C.M.8
Morgan, D.B.9
Locatelli, S.10
Gonder, M.K.11
Kranzusch, P.J.12
Walsh, P.D.13
Delaporte, E.14
Mpoudi-Ngole, E.15
Georgiev, A.V.16
Müller, M.N.17
Shaw, G.M.18
Peeters, M.19
Sharp, P.M.20
Rayner, J.C.21
Hahn, B.H.22
more..
-
37
-
-
0001419091
-
Anthropological implications of sickle cell gene distribution in West Africa
-
Livingstone, F. B. (1958). Anthropological implications of sickle cell gene distribution in West Africa. American Anthropologist 60, 531-561.
-
(1958)
American Anthropologist
, vol.60
, pp. 531-561
-
-
Livingstone, F.B.1
-
38
-
-
41049117759
-
A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): Evolution of life-history traits and host switches
-
Martinsen, E. S., Perkins, S. L. and Schall, J. J. (2008). A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): Evolution of life-history traits and host switches. Molecular Phylogenetics and Evolution 47, 261-273.
-
(2008)
Molecular Phylogenetics and Evolution
, vol.47
, pp. 261-273
-
-
Martinsen, E.S.1
Perkins, S.L.2
Schall, J.J.3
-
39
-
-
0029969113
-
Comparison of circumsporozoite proteins from avian and mammalian malarias: Biological and phylogenetic implications
-
McCutchan, T. F., Kissinger, J. C., Touray, M. G., Rogers, M. J., Li, J., Sullivan, M., Braga, E. M., Krettli, A.U. and Miller, L. H. (1996). Comparison of circumsporozoite proteins from avian and mammalian malarias: biological and phylogenetic implications. Proceedings of the National Academy of Sciences,USA93, 11889-11894.
-
(1996)
Proceedings of the National Academy of Sciences,USA
, vol.93
, pp. 11889-11894
-
-
McCutchan, T.F.1
Kissinger, J.C.2
Touray, M.G.3
Rogers, M.J.4
Li, J.5
Sullivan, M.6
Braga, E.M.7
Krettli, A.U.8
Miller, L.H.9
-
40
-
-
0032169951
-
Divergent evolutionary constraints on mitochondrial and nuclear genomes of malaria parasites
-
McIntosh, M. T., Srivasta, R. and Vaidya, A. B. (1998). Divergent evolutionary constraints on mitochondrial and nuclear genomes of malaria parasites. Molecular and Biochemical Parasitology 95, 69-80.
-
(1998)
Molecular and Biochemical Parasitology
, vol.95
, pp. 69-80
-
-
McIntosh, M.T.1
Srivasta, R.2
Vaidya, A.B.3
-
41
-
-
79551690052
-
-
Accessed: 2009-08-04. (Archived by WebCite(r) at http://www.webcitation. org/5imQlJeQa)
-
Miller, M. A., Holder, M. T., Vos, R., Midford, P. E., Liebowitz, T., Chan, L., Hoover, P. andWarnow, T. (2010). The CIPRES Portals. CIPRES. 2009-08-04. URL: http://www.phylo.org/sub-sections/portal. Accessed: 2009-08-04. (Archived by WebCite(r) at http://www.webcitation.org/5imQlJeQa)
-
(2010)
The CIPRES Portals. CIPRES. 2009-08-04
-
-
Miller, M.A.1
Holder, M.T.2
Vos, R.3
Midford, P.E.4
Liebowitz, T.5
Chan, L.6
Hoover, P.7
Warnow, T.8
-
42
-
-
72449210137
-
Phylogeny of asian primate malarias inferred fromapicoplast genome-encoded genes with special emphasis on the positions of Plasmodium vivax and P. fragile
-
Mitsui, H., Arisue, N., Sakihama, N., Inagaki, Y., Horii, T., Hasegawa, M., Tanabe, K. and Hashimoto, T. (2010). Phylogeny of Asian primate malarias inferred fromapicoplast genome-encoded genes with special emphasis on the positions of Plasmodium vivax and P. fragile. Gene 450, 32-38.
-
(2010)
Gene
, vol.450
, pp. 32-38
-
-
Mitsui, H.1
Arisue, N.2
Sakihama, N.3
Inagaki, Y.4
Horii, T.5
Hasegawa, M.6
Tanabe, K.7
Hashimoto, T.8
-
43
-
-
33646477254
-
Ape abundance and habitat use in the Gouaougo Triange,Republic ofCongo
-
Morgan, D., Sanz, C., Onononga, J. R. and Strindberg, S. (2006). Ape abundance and habitat use in the Gouaougo Triange,Republic ofCongo. International Journal of Primatology 27, 147-179.
-
(2006)
International Journal of Primatology
, vol.27
, pp. 147-179
-
-
Morgan, D.1
Sanz, C.2
Onononga, J.R.3
Strindberg, S.4
-
44
-
-
0037130233
-
Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum
-
Mu, J., Duan, J., Markova, K., Joy, D., Huynh, C. Q., Branch, O. H., Li, W.-H. and Su, X. (2002). Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum. Nature 418, 323-326.
-
(2002)
Nature
, vol.418
, pp. 323-326
-
-
Mu, J.1
Duan, J.2
Markova, K.3
Joy, D.4
Huynh, C.Q.5
Branch, O.H.6
Li, W.-H.7
Su, X.8
-
45
-
-
25444533019
-
Host switch leads to emergence of Plasmodium vivax malaria in humans
-
Mu, J., Joy, D. A., Duan, J., Huang, Y., Carlton, J., Walker, J., Barnwell, J., Beerli, P., Charleston, M. A., Pybus, O. G. and Su, X. (2005). Host switch leads to emergence of Plasmodium vivax malaria in humans. Molecular Biology and Evolution 22, 1686-1693.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1686-1693
-
-
Mu, J.1
Joy, D.A.2
Duan, J.3
Huang, Y.4
Carlton, J.5
Walker, J.6
Barnwell, J.7
Beerli, P.8
Charleston, M.A.9
Pybus, O.G.10
Su, X.11
-
46
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M. and Gojobori, T. (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 3, 418-426.
-
(1986)
Molecular Biology and Evolution
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
48
-
-
67249133505
-
A new malaria agent in African hominids
-
Ollomo, B., Durand, P., Prugnolle, F., Douzery, E., Arnathau, C., Nkoge, D., Leroy, E. and Renaud, F. (2009). A new malaria agent in African hominids. PLoS Pathogens 5, e1000446.
-
(2009)
PLoS Pathogens
, vol.5
-
-
Ollomo, B.1
Durand, P.2
Prugnolle, F.3
Douzery, E.4
Arnathau, C.5
Nkoge, D.6
Leroy, E.7
Renaud, F.8
-
49
-
-
0036801380
-
A molecular phylogeny of malarial parasites recovered from cytochrome b gene sequences
-
Perkins, S. L. and Schall, J. J. (2002). A molecular phylogeny of malarial parasites recovered from cytochrome b gene sequences. Journal of Parasitology 88, 972-978.
-
(2002)
Journal of Parasitology
, vol.88
, pp. 972-978
-
-
Perkins, S.L.1
Schall, J.J.2
-
50
-
-
76549105518
-
African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum
-
Prugnolle, F., Durand, P., Neel, C., Ollomo, B., Ayala, F. J., Arnathau, C., Etienne, L., Mpoudi-Ngole, E., Nkoghe, D., Leroy, E., Delaporte, E., Peeters, M. and Renaud, F. (2010). African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum. Proceedings of the National Academy of Sciences, USA 107, 1458-1463.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 1458-1463
-
-
Prugnolle, F.1
Durand, P.2
Neel, C.3
Ollomo, B.4
Ayala, F.J.5
Arnathau, C.6
Etienne, L.7
Mpoudi-Ngole, E.8
Nkoghe, D.9
Leroy, E.10
Delaporte, E.11
Peeters, M.12
Renaud, F.13
-
51
-
-
77955379911
-
Ecology of malaria parasites infection Southeast Asian macaques: Evidence fromcytochrome b sequences
-
Putaporntip, C., Jongwutiwes, S., Thongaree, S., Seethamchai, S., Grynberg, P. and Hughes, A. L. (2010). Ecology of malaria parasites infection Southeast Asian macaques: evidence fromcytochrome b sequences. Molecular Ecology 19, 3466-3476.
-
(2010)
Molecular Ecology
, vol.19
, pp. 3466-3476
-
-
Putaporntip, C.1
Jongwutiwes, S.2
Thongaree, S.3
Seethamchai, S.4
Grynberg, P.5
Hughes, A.L.6
-
52
-
-
0030208897
-
Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: Monophyletic nature of the human malaria parasite, Plasmodium falciparum
-
Qari, S. H., Shi, Y. P., Pieniazek, N. J., Collins, W. E. and Lal, A. A. (1996). Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: monophyletic nature of the human malaria parasite, Plasmodium falciparum. Molecular Phylogenetics and Evolution 6, 157-165.
-
(1996)
Molecular Phylogenetics and Evolution
, vol.6
, pp. 157-165
-
-
Qari, S.H.1
Shi, Y.P.2
Pieniazek, N.J.3
Collins, W.E.4
Lal, A.A.5
-
53
-
-
70349301459
-
The origin of malignant malaria
-
Rich, S. M., Leendertz, F. H., Xu, G., LeBreton, M., Djoko, C. F., Aminake, M. N., Takang, E. E., Diffo, J. L., Pike, B. L., Rosenthal, B. M., Formenty, P., Boesch, C., Ayala, F. J. and Wolfe, N. D. (2009). The origin of malignant malaria. Proceedings of the National Academy of Sciences, USA 196, 14902-14907.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.196
, pp. 14902-14907
-
-
Rich, S.M.1
Leendertz, F.H.2
Xu, G.3
Lebreton, M.4
Djoko, C.F.5
Aminake, M.N.6
Takang, E.E.7
Diffo, J.L.8
Pike, B.L.9
Rosenthal, B.M.10
Formenty, P.11
Boesch, C.12
Ayala, F.J.13
Wolfe, N.D.14
-
54
-
-
77954593415
-
A molecular clock for malaria parasites
-
Ricklefs, R. E. and Outlaw, D. C. (2010). A molecular clock for malaria parasites. Science 329, 226-229.
-
(2010)
Science
, vol.329
, pp. 226-229
-
-
Ricklefs, R.E.1
Outlaw, D.C.2
-
55
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F. and Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
56
-
-
44649136815
-
Origins of human malaria: Rare genomic changes and full mitochondrial genomes confirm the relationship of Plasmodium falciparum to other mammalian parasites but complicate the origins of Plasmodium vivax
-
Roy, S.W. and Irimia, M. (2008). Origins of human malaria: rare genomic changes and full mitochondrial genomes confirm the relationship of Plasmodium falciparum to other mammalian parasites but complicate the origins of Plasmodium vivax. Molecular Biology and Evolution 25, 1192-1198.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1192-1198
-
-
Roy, S.W.1
Irimia, M.2
-
57
-
-
0030773749
-
A nonparametric approach to estimating divergence timescales in the absence of rate constancy
-
Sanderson, M. J. (1997). A nonparametric approach to estimating divergence timescales in the absence of rate constancy. Molecular Biology and Evolution 15, 1218-1231.
-
(1997)
Molecular Biology and Evolution
, vol.15
, pp. 1218-1231
-
-
Sanderson, M.J.1
-
58
-
-
0026736562
-
Phylogeny of Plasmodium species: Estimation and inference
-
Siddall, M. E. and Barta, J. R. (1992). Phylogeny of Plasmodium species: estimation and inference. Journal of Parasitology 78, 567-568.
-
(1992)
Journal of Parasitology
, vol.78
, pp. 567-568
-
-
Siddall, M.E.1
Barta, J.R.2
-
59
-
-
0032924868
-
Synonymous and nonsynonymous substitution rates in diatoms: A comparison between chloroplast and nuclear genes
-
Sorhannus, U. and Fox, M. (1999). Synonymous and nonsynonymous substitution rates in diatoms: a comparison between chloroplast and nuclear genes. Journal of Molecular Evolution 48, 209-212.
-
(1999)
Journal of Molecular Evolution
, vol.48
, pp. 209-212
-
-
Sorhannus, U.1
Fox, M.2
-
60
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
61
-
-
79951675256
-
Primates (Primates)
-
(ed. Hedges, S. B. and Kumar, S.), Oxford University Press, New York
-
Steiper, M. E. and Young, N. M. (2009). Primates (Primates) In The Timetree of Life (ed. Hedges, S. B. and Kumar, S.), pp. 482-486. Oxford University Press, New York.
-
(2009)
The Timetree of Life
, pp. 482-486
-
-
Steiper, M.E.1
Young, N.M.2
-
62
-
-
84990137020
-
Forest and primate conservation in East Africa
-
Struhsaker, T. T. (1981). Forest and primate conservation in East Africa. African Journal of Ecology 19, 99-114.
-
(1981)
African Journal of Ecology
, vol.19
, pp. 99-114
-
-
Struhsaker, T.T.1
-
63
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24, 1596-1599.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
64
-
-
0027157960
-
Estimation of the numberof nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura, K. and Nei, M. (1993). Estimation of the numberof nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10, 512-526.
-
(1993)
Molecular Biology and Evolution
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
65
-
-
78049530040
-
Plasmodium falciparum accompanied the human expansion out of Africa
-
Tanabe, K., Mita, T., Jombart, T., Eriksson, A., Horibe, S., Placpac, N., Ranford-Cartwright, L., Sawai, H., Sakihama, N., Ohmae, S., Nakamura, M., Ferreira, M. U., Escalante, A. A., Prugnolle, F., Björkman, A., Färnet, A., Kaneko, A., Horii, T., Manica, A., Kishino, H. and Balloux, F. (2010) Plasmodium falciparum accompanied the human expansion out of Africa. Current Biology 20, 1-7.
-
(2010)
Current Biology
, vol.20
, pp. 1-7
-
-
Tanabe, K.1
Mita, T.2
Jombart, T.3
Eriksson, A.4
Horibe, S.5
Placpac, N.6
Ranford-Cartwright, L.7
Sawai, H.8
Sakihama, N.9
Ohmae, S.10
Nakamura, M.11
Ferreira, M.U.12
Escalante, A.A.13
Prugnolle, F.14
Björkman, A.15
Färnet, A.16
Kaneko, A.17
Horii, T.18
Manica, A.19
Kishino, H.20
Balloux, F.21
more..
-
66
-
-
0029100727
-
Phylogenetic test of the molecular clock and linearized trees
-
Takezaki, N., Rzhetsky, A. and Nei, M. (1995). Phylogenetic test of the molecular clock and linearized trees. Molecular Biology and Evolution 12, 823-833.
-
(1995)
Molecular Biology and Evolution
, vol.12
, pp. 823-833
-
-
Takezaki, N.1
Rzhetsky, A.2
Nei, M.3
-
67
-
-
0035865322
-
A map of human genome sequence variation containing 1·42 million single nucleotide polymorphisms
-
The International SNP Map Working Group.
-
The International SNP Map Working Group. (2002). A map of human genome sequence variation containing 1·42 million single nucleotide polymorphisms. Nature 409, 928-933.
-
(2002)
Nature
, vol.409
, pp. 928-933
-
-
-
68
-
-
0027968068
-
CLUSTAL W: Improvement of the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994). CLUSTAL W: improvement of the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
69
-
-
33845875437
-
A genome-wide map of diversity in Plasmodium falciparum
-
Volkman, S. K., Sabeti, P. C., DeCaprio, D., Neafsey, D. E., Schaffner, S. F., Milner, A. A. Jr., Daily, J. P., Sarr, O., Ndiaye, D., Ndir, O., Mboup, S., Duraisingh, M. T., Lukens, A., Derr, A., Stange-Thomann, N., Waggoner, S., Onofrio, R., Ziaugra, L., Mauceli, E., Gnerre, S., Jaffe, D. B., Zainoun, J., Wiegand, R. C., Birren, B.W., Hartl, D. L., Galagan, J. E., Lander, E. S. and Wirth, D. F. (2007). A genome-wide map of diversity in Plasmodium falciparum. Nature Genetics 39, 113-119.
-
(2007)
Nature Genetics
, vol.39
, pp. 113-119
-
-
Volkman, S.K.1
Sabeti, P.C.2
Decaprio, D.3
Neafsey, D.E.4
Schaffner, S.F.5
Milner Jr., A.A.6
Daily, J.P.7
Sarr, O.8
Ndiaye, D.9
Ndir, O.10
Mboup, S.11
Duraisingh, M.T.12
Lukens, A.13
Derr, A.14
Stange-Thomann, N.15
Waggoner, S.16
Onofrio, R.17
Ziaugra, L.18
Mauceli, E.19
Gnerre, S.20
Jaffe, D.B.21
Zainoun, J.22
Wiegand, R.C.23
Birren, B.W.24
Hartl, D.L.25
Galagan, J.E.26
Lander, E.S.27
Wirth, D.F.28
more..
-
70
-
-
0032822086
-
Drug resistance in Plasmodium falciparum malaria
-
Warhurst, D. C. (1999). Drug resistance in Plasmodium falciparum malaria. Infection 27, S55-S58.
-
(1999)
Infection
, vol.27
-
-
Warhurst, D.C.1
-
71
-
-
0026334859
-
Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts
-
Waters, A. P., Higgins, D. G. and McCutchan, T. F. (1991). Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts. Proceedings of the National Academy of Sciences,USA88, 3140-3144.
-
(1991)
Proceedings of the National Academy of Sciences,USA
, vol.88
, pp. 3140-3144
-
-
Waters, A.P.1
Higgins, D.G.2
McCutchan, T.F.3
-
73
-
-
34249089649
-
Origins of major human infectious diseases
-
Wolfe, N. D., Dunavan, C. P. and Diamond, J. (2007). Origins of major human infectious diseases. Nature 447, 279-283.
-
(2007)
Nature
, vol.447
, pp. 279-283
-
-
Wolfe, N.D.1
Dunavan, C.P.2
Diamond, J.3
-
74
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. (2007) PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24, 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
75
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang, Z. and Nielsen, R. (2000). Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Molecular Biology and Evolution 17, 32-43.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
76
-
-
78651160766
-
A study of Plasmodium berghei in Thamnomys surdaster, and in other experimental hosts
-
Yoeli, M. and Most, H. (1964). A study of Plasmodium berghei in Thamnomys surdaster, and in other experimental hosts. American Journal of Tropical Medicine and Hygiene 13, 659-663.
-
(1964)
American Journal of Tropical Medicine and Hygiene
, vol.13
, pp. 659-663
-
-
Yoeli, M.1
Most, H.2
|