Divergent evolutionary constraints on mitochondrial and nuclear genomes of malaria parasites

Molecular and Biochemical Parasitology

Volumn 95, Issue 1, 1998, Pages 69-80

  McIntosh, Michael T ^a   Srivastava, Ranjana ^a   Vaidya, Akhil B ^a  

^a DREXEL UNIVERSITY COLLEGE OF MEDICINE   (United States)

Author keywords

Evolution; Genome; Malaria; Mitochondria; Plasmodium vivax; Sequence

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC ORGANIZATION; GENETIC VARIABILITY; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM; PLASMODIUM FALCIPARUM; PLASMODIUM GALLINACEUM; PLASMODIUM VIVAX; PLASMODIUM YOELII; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; BASE COMPOSITION; CELL NUCLEUS; CLONING, MOLECULAR; CODON; DNA, MITOCHONDRIAL; DNA, PROTOZOAN; EVOLUTION, MOLECULAR; GENES, PROTOZOAN; GENOME, PROTOZOAN; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYSICAL CHROMOSOME MAPPING; PLASMODIUM; SEQUENCE ANALYSIS, DNA;

PLASMODIUM FALCIPARUM; PLASMODIUM GALLINACEUM; PLASMODIUM VIVAX; PLASMODIUM YOELII; PRIMATES;

EID: 0032169951     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-6851(98)00093-0     Document Type: Article

References (48)

1. Kemp DJ, Cowman AF, Waliker D Genetic diversity in Plasmodium falciparum. Adv Parasitol. 29:1990;75-149.
2. Day KP, Koella JC, Nee S, Gupta S, Read AF Population genetics and dynamics of Plasmodium falciparum: an ecological view. Parasitology. 104:1992;s35-s52.
3. Forsyth KP, Anders RR, Cattani JA, Alpers MP Small area variation in prevalence of S-antigen serotype of Plasmodium falciparum in villages of Madang, Papua New Guinea. Am J Trop Med Hyg. 40:1989;344-350.
4. Rathod PK, McErlean T, Lee PC Variations in frequencies of drug resistance in Plasmodium falciparum. Proc Natl Acad Sci USA. 94:1997;9389-9393.
5. McConkey GA, Waters AP, McCutchan TF The generation of genetic diversity in malaria parasites. Annu Rev Microbiol. 44:1990;479-498.
6. Cavalier-Smith T The number of symbiotic origins of organelles. Biosystems. 28(1-3):1992;91-108.
7. Yang D, Oyaizu Y, Oyaizu H, Olsen GJ, Woese CR Mitochondrial origins. Proc Natl Acad Sci USA. 82:1985;4443-4447.
8. Gray MW The evolutionary origins of organelles. Trends Genet. 5:1989;294-299.
9. Brown WM, George M, Wilson AC Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA. 76:1979;1967-1971.
10. Martin AP, Naylor GJP, Palumbi SR Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature. 357:1992;153-155.
11. Ramirez V, Savoie P, Morais R Molecular characterization and evolution of a duck mitochondrial genome. J Mol Evol. 37:1993;296-310.
12. Khrapko K, Coller HA, Andre PC., Li X, Hanekamp JS, Thilly WG Mitochondrial mutational spectra in human cells and tissues. Proc Natl Acad Sci USA. 94:1997;13798-13803.
13. Dowton M, Austin AD Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera. J Mol Evol. 41:1995;958-965.
14. Vaidya AB, Arasu P Tandemly arranged gene clusters of malarial parasites that are highly conserved and transcribed. Molec Biochem Parasitol. 22:1987;249-257.
15. Joseph JT, Aldritt SM, Unnasch T, Puijalon O, Wirth DF Characterization of a conserved extrachromosomal element isolated from the avian malarial parasite Plasmodium gallinaceum. Mol Cell Biol. 9(9):1989;3621-3629.
16. Vaidya AB, Akella R, Suplick K. Sequences similar to genes for two mitochondrial proteins and portions of ribosomal RNA in tandemly arrayed 6-kilobase-pair DNA of a malarial parasite. Mol Biochem Parasitol 1989;35:97-108. Corrigendum Mol Biochem Parasitol 1990;39:295-296.
17. Vaidya AB, Akella R, Suplick K. Sequences similar to genes for two mitochondrial proteins and portions of ribosomal RNA in tandemly arrayed 6-kilobase-pair DNA of a malarial parasite. Mol Biochem Parasitol 1989;35:97-108. Corrigendum Mol Biochem Parasitol 1990;39:295-296.
18. Aldritt SM, Joseph JT, Wirth DF Sequence identification of cytochrome b in Plasmodium gallinaceum. Mol Cell Biol. 9(9):1989;3614-3620.
19. Feagin JE The six-kb element of Plasmodium falciparum encodes mitochondrial cytochrome genes. Mol Biochem Parasitol. 52:1992;145-148.
20. Vaidya AB, Lashgari MS, Pologe LG, Morrisey J Structural features of Plasmodium cytochrome b that may underlie susceptibility to eight-aminoquinolines and hydroxynaphthoquinones. Mol Biochem Parasitol. 58:1992;1)33-42.
21. Lim PKC, Kita K, Tan SK et al. Mitochondrial cytochrome c oxidase III (COIII) gene of Plasmodium vivax. Jpn J Parasitol. 44:1995;40-43.
22. Lim PKC, Watanabe Y, Tan SK et al. Cytochrome c oxidase III (COIII) gene of Plasmodium vivax: complete coding sequence and its expression in the erythrocytic stages of the parasite. Kisechugaku Zasshi. 45:1996;373-383.
23. Ossorio PN, Sibley LD, Boothroyd JC Mitochondrial-like DNA sequences flanked by direct and inverted repeats in the nuclear genome of Toxoplasma gondii. J Mol Biol. 222:1991;525-536.
24. Kairo A, Fairlamb AH, Gobright E, Nene V A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins. EMBO. 14(4):1994;898-905.
25. Jasmer DP, Reduker DW, Goof WL, Stiller D, McGuire TC DNA probes distinguish geographical isolates and identify an novel DNA molecule of Babesia bovis. J Parasitol. 76:1990;834-841.
26. Hotzel I, Kabakoff R, Ozaki LS Small extrachromosomal nucleic acid segments in protozoan parasites. Vet Parasitol. 57:1995;57-60.
27. McCutchan TF, Dame JB, Miller LHl, Barnwell J Evolutionary relatedness of Plasmodium species as determined by the structure of DNA. Science. 225:1984;808-811.
28. Escalante AA, Ayala FJ Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes. Proc Natl Acad Sci USA. 92:1995;5793-5797.
29. Escalante AA, Ayala FJ Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proc Nat Acad Sci USA. 91(24):1994;11373-11377.
30. Waters AP, Higgins DG, McCutchan TF Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts. Proc Natl Acad Sci USA. 88:1991;3140-3144.
31. Fry M, Pudney M Site of action of the antimalarial hydroxynaphthoquinone, 2-[trans-4(4′-chlorophenyl)cyclohexyl]-3-hydroxy-1,4-naphthoquinone (566C80). Biochem Pharmacol. 43:1992;1545-1553.
32. Srivastava IK, Rottenberg H, Vaidya AB Atovaquone, a broad spectrum antiparasitic drug, collapses mitochondrial membrane potential in a malarial parasite. J Biol Chem. 272:1997;3961-3966.
33. Vaidya AB Mitochondrial physiology as a target for atovaquone and other antimalarials. Sherman IW Malaria: Parasite Biology, Pathogenesis, and Protection. Chapter 25. 1998;355-368 ASM Press, Washington DC.
34. Kiatfuengfoo R, Suthiphongchai T, Prapunwattana P, Yuthavong Y Mitochondria as the site of action of tetracycline on Plasmodium falciparum. Mol Biochem Parasitol. 34:1989;109-116.
35. Fang X, Kaslow DC, Adams JH, Miller LH Cloning of the Plasmodium vivax Duffy receptor. Mol Biochem Parasitol. 44:1991;125-132.
36. Sanger F, Nicklen S, Coulson AR DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA. 74:1977;5463-5467.
37. Feagin JE The extrachromosomal DNAs of Apicomplexan parasites. Annu Rev Microbiol. 48:1994;81-104.
38. Suplick K, Morrisey J, Vaidya AB Complex transcription from the extrachromosomal DNA encoding mitochondrial functions of Plasmodium yoelii. Mol Cell Biol. 10(12):1990;6381-6388.
39. Vaidya AB, Morrisey J, Plowe CV, Kaslow SC, Wellems TE Unidirectional dominance of cytoplasmic inheritance in two genetic crosses of Plasmodium falciparum. Mol Cell Biol. 13:1993;7349-7357.
40. Feagin JE, Werner E, Gardner MJ, Williamson DH, Wilson RJM Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences. Nucleic Acids Res. 20:1992;879-889.
41. di-Rago JP, Perea X, Colson AM DNA sequence analysis of diuron-resistant mutations in the mitochondrial cytochrome b gene of Saccharomyces cerevisiae. FEBS Lett. 208:1986;208-210.
42. Saul A, Battistutta D Codon usage in Plasmodium falciparum. Mol Biochem Parasitol. 27:1988;35-42.
43. Fry M, Beesley JE Mitochondria of mammalian Plasmodium species. Parasitology. 52:1991;17-26.
44. Sherman IW Biochemistry of Plasmodium (malarial parasites). Microbiol Rev. 43:1979;453-495.
45. Murgola EJ, Hizaki KA, Goringer HU, Dahlberg AE Mutant 16S ribosomal RNA:a codon-specific translational suppresser. Proc Natl Acad Sci USA. 85:1988;4162-4165.
46. Preiser PR, Wilson RJM, Moore PW et al. Recombination associated with replication of malarial mitochondrial DNA. EMBO J. 15:1997;684-693.
47. Divo AA, Geary TG, Jensen JB Oxygen- and time-dependent effects of antibiotics and selected mitochondrial inhibitors on Plasmodium falciparum in culture. Antimicrob Agents Chemo. 27:1985;21-27.
48. Ginsburg H, Divo AA, Geary TG, Boltand MT, Jensen JB Effects of mitochondrial inhibitors on intraerythrocytic Plasmodium falciparum in in vitro cultures. J Protozool. 33:1986;121-125.