메뉴 건너뛰기




Volumn 804, Issue , 2012, Pages 35-55

From bacterial to microbial ecosystems (Metagenomics)

Author keywords

Binning; Gene finding; Metadata; Metagenomic assembly; Metagenomics; Microbial ecology; Pyrosequencing; Sample complexity; Shotgun sequencing

Indexed keywords

BACTERIAL DNA;

EID: 84855896297     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-361-5_3     Document Type: Article
Times cited : (22)

References (105)
  • 1
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: Application of genomics to uncultured microorganisms
    • DOI 10.1128/MMBR.68.4.669-685.2004
    • Handelsman J. (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev, 68 (4):669-685. (Pubitemid 39628532)
    • (2004) Microbiology and Molecular Biology Reviews , vol.68 , Issue.4 , pp. 669-685
    • Handelsman, J.1
  • 3
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Sanger F, Nicklen S, Coulson AR. (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A, 74 (12):5463-5467.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , Issue.12 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 5
    • 64849115804 scopus 로고    scopus 로고
    • Digital PCR provides sensitive and absolute calibration for high throughput sequencing
    • White RA, 3rd, et al. (2009) Digital PCR provides sensitive and absolute calibration for high throughput sequencing. BMC Genomics, 10:116.
    • (2009) BMC Genomics , vol.10 , pp. 116
    • White Iii, R.A.1
  • 6
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
    • Rusch DB, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol, 5(3):e77.
    • (2007) PLoS Biol , vol.5 , Issue.3
    • Rusch, D.B.1
  • 7
    • 33947235074 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families
    • Yooseph S, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol, 5(3):e16.
    • (2007) PLoS Biol , vol.5 , Issue.3
    • Yooseph, S.1
  • 9
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong EF, et al. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science, 311 (5760):496-503.
    • (2006) Science , vol.311 , Issue.5760 , pp. 496-503
    • Delong, E.F.1
  • 10
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Beja O, et al. (2000) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science, 289(5486):1902-1906.
    • (2000) Science , vol.289 , Issue.5486 , pp. 1902-1906
    • Beja, O.1
  • 11
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
    • Konstantinidis KT, et al. (2009) Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Appl Environ Microbiol, 75 (16):5345-5355.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.16 , pp. 5345-5355
    • Konstantinidis, K.T.1
  • 13
    • 34547129847 scopus 로고    scopus 로고
    • Development of the human infant intestinal microbiota
    • Palmer C, et al. (2007) Development of the human infant intestinal microbiota. PLoS Biol, 5(7):e177.
    • (2007) PLoS Biol , vol.5 , Issue.7
    • Palmer, C.1
  • 14
    • 69949111703 scopus 로고    scopus 로고
    • The core gut microbiome, energy balance and obesity
    • Turnbaugh PJ, Gordon JI. (2009) The core gut microbiome, energy balance and obesity. J Physiol, 587(Pt 17):4153-4158.
    • (2009) J Physiol , Issue.PART 17 , pp. 4153-4158
    • Turnbaugh, P.J.1    Gordon, J.I.2
  • 15
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh PJ, et al. (2009) A core gut microbiome in obese and lean twins. Nature, 457(7228):480-484.
    • (2009) Nature , vol.457 , Issue.7228 , pp. 480-484
    • Turnbaugh, P.J.1
  • 16
    • 52949115612 scopus 로고    scopus 로고
    • Microbiology: Metagenomics
    • Hugenholtz P, Tyson GW. (2008) Microbiology: metagenomics. Nature, 455 (7212):481-483.
    • (2008) Nature , vol.455 , Issue.7212 , pp. 481-483
    • Hugenholtz, P.1    Tyson, G.W.2
  • 17
    • 40249095175 scopus 로고    scopus 로고
    • Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology
    • DOI 10.1038/ismej.2008.10, PII ISMEJ200810
    • Binga EK, Lasken RS, Neufeld JD. (2008) Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. ISME J, 2 (3):233-241. (Pubitemid 351334272)
    • (2008) ISME Journal , vol.2 , Issue.3 , pp. 233-241
    • Binga, E.K.1    Lasken, R.S.2    Neufeld, J.D.3
  • 18
    • 77955570845 scopus 로고    scopus 로고
    • Hydroxyapatitemediated separation of dsDNA, ssDNA and RNA genotypes from natural viral assemblages and metagenomic library construction
    • Pfannkoch C, et al. (2010) Hydroxyapatitemediated separation of dsDNA, ssDNA and RNA genotypes from natural viral assemblages and metagenomic library construction. Appl Environ Microbiol, 76 (15):5039-5045.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.15 , pp. 5039-5045
    • Pfannkoch, C.1
  • 19
    • 84855896008 scopus 로고    scopus 로고
    • Optimizing the extraction of prokaryotes from soils for highthroughput metagenomic sequencing
    • Submitted
    • Williamson KE, et al. Optimizing the extraction of prokaryotes from soils for highthroughput metagenomic sequencing. Appl Environ Microbiol, Submitted.
    • Appl Environ Microbiol
    • Williamson, K.E.1
  • 20
    • 0036092095 scopus 로고    scopus 로고
    • Quantification, base composition, and fate of extracellular DNA in marine sediments
    • Dell'Anno A, Bompadre S, Danovaro R. (2002) Quantification, base composition, and fate of extracellular DNA in marine sediments. Limnol Oceanogr, 47(3):899-905. (Pubitemid 34527296)
    • (2002) Limnology and Oceanography , vol.47 , Issue.3 , pp. 899-905
    • Dell'Anno, A.1    Bompadre, S.2    Danovaro, R.3
  • 23
    • 65749105400 scopus 로고    scopus 로고
    • A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts
    • Warnecke F, Hess M. (2009) A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts. J Biotechnol, 142 (1):91-95.
    • (2009) J Biotechnol , vol.142 , Issue.1 , pp. 91-95
    • Warnecke, F.1    Hess, M.2
  • 24
    • 66149130975 scopus 로고    scopus 로고
    • Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
    • Shi Y, Tyson GW, DeLong EF. (2009) Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature, 459(7244):266-269.
    • (2009) Nature , vol.459 , Issue.7244 , pp. 266-269
    • Shi, Y.1    Tyson, G.W.2    Delong, E.F.3
  • 25
    • 80055120631 scopus 로고    scopus 로고
    • Analyzing gene expression from marine microbial communities using environmental transcriptomics
    • Poretsky RS, et al. (2009) Analyzing gene expression from marine microbial communities using environmental transcriptomics. J Vis Exp, (24).
    • (2009) J Vis Exp , Issue.24
    • Poretsky, R.S.1
  • 26
    • 52449114817 scopus 로고    scopus 로고
    • Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
    • Gilbert JA, et al. (2008) Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS ONE, 3(8):e3042.
    • (2008) PLoS ONE , vol.3 , Issue.8
    • Gilbert, J.A.1
  • 27
    • 1642523441 scopus 로고    scopus 로고
    • Soil washing improves the recovery of total community DNA from polluted and high organic content sediments
    • DOI 10.1016/j.mimet.2003.10.006
    • Fortin N, et al. (2004) Soil washing improves the recovery of total community DNA from polluted and high organic content sediments. J Microbiol Methods, 56(2):181-191. (Pubitemid 38117177)
    • (2004) Journal of Microbiological Methods , vol.56 , Issue.2 , pp. 181-191
    • Fortin, N.1    Beaumier, D.2    Lee, K.3    Greer, C.W.4
  • 30
    • 53649107122 scopus 로고    scopus 로고
    • Functional metagenomic profiling of nine biomes
    • Dinsdale EA, et al. (2008) Functional metagenomic profiling of nine biomes. Nature, 455(7214):830.
    • (2008) Nature , vol.455 , Issue.7214 , pp. 830
    • Dinsdale, E.A.1
  • 32
    • 84855896006 scopus 로고    scopus 로고
    • Products and solutions: System workflow. (2009) [http://www.454.com/ productssolutions/how-it-works/index.asp].
    • (2009)
  • 33
    • 84855896005 scopus 로고    scopus 로고
    • Products and solutions: Multi span paired end reads. (2009) [http://www.454.com/products-solutions/experimental-designoptions/ multi-span-paired-end-reads.asp].
    • (2009)
  • 36
    • 44449119442 scopus 로고    scopus 로고
    • Metagenomics: Exploring unseen communities
    • Blow N. (2008) Metagenomics: exploring unseen communities. Nature, 453 (7195):687-690.
    • (2008) Nature , vol.453 , Issue.7195 , pp. 687-690
    • Blow, N.1
  • 37
    • 84855865925 scopus 로고    scopus 로고
    • Publications and resources. (2009) [http://www.454.com/publications-and- resources].
    • (2009)
  • 38
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis ER. (2008) The impact of next-generation sequencing technology on genetics. Trends Genet, 24(3):133-141.
    • (2008) Trends Genet , vol.24 , Issue.3 , pp. 133-141
    • Mardis, E.R.1
  • 40
    • 35748976529 scopus 로고    scopus 로고
    • Get the most out of your metagenome: Computational analysis of environmental sequence data
    • DOI 10.1016/j.mib.2007.09.001, PII S1369527407001233, Antimicrobials/Genomics
    • Raes J, Foerstner KU, Bork P. (2007) Get the most out of your metagenome: computational analysis of environmental sequence data. Curr Opin Microbiol, 10(5):490-498. (Pubitemid 350052690)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.5 , pp. 490-498
    • Raes, J.1    Foerstner, K.U.2    Bork, P.3
  • 41
    • 0033214628 scopus 로고    scopus 로고
    • Heuristic approach to deriving models for gene finding
    • DOI 10.1093/nar/27.19.3911
    • Besemer J, Borodovsky M. (1999) Heuristic approach to deriving models for gene finding. Nucleic Acids Res, 27 (19):3911-3920. (Pubitemid 29454440)
    • (1999) Nucleic Acids Research , vol.27 , Issue.19 , pp. 3911-3920
    • Besemer, J.1    Borodovsky, M.2
  • 42
    • 0035399931 scopus 로고    scopus 로고
    • Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes
    • DOI 10.1016/S0966-842X(01)02079-0, PII S0966842X01020790
    • Karlin S. (2001) Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes. Trends Microbiol, 9 (7):335-343. (Pubitemid 32575278)
    • (2001) Trends in Microbiology , vol.9 , Issue.7 , pp. 335-343
    • Karlin, S.1
  • 43
    • 33750976398 scopus 로고    scopus 로고
    • MetaGene: Prokaryotic gene finding from environmental genome shotgun sequences
    • DOI 10.1093/nar/gkl723
    • Noguchi H, Park J, Takagi T. (2006) Meta-Gene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res, 34(19):5623-5630. (Pubitemid 44742449)
    • (2006) Nucleic Acids Research , vol.34 , Issue.19 , pp. 5623-5630
    • Noguchi, H.1    Park, J.2    Takagi, T.3
  • 44
    • 44649090674 scopus 로고    scopus 로고
    • Gene prediction in metagenomic fragments: A large scale machine learning approach
    • Hoff KJ, et al. (2008) Gene prediction in metagenomic fragments: a large scale machine learning approach. BMC Bioinformatics, 9:217.
    • (2008) BMC Bioinformatics , vol.9 , pp. 217
    • Hoff, K.J.1
  • 46
    • 42949114833 scopus 로고    scopus 로고
    • Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
    • Yooseph S, Li W, Sutton G. (2008) Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering. BMC Bioinformatics, 9:182.
    • (2008) BMC Bioinformatics , vol.9 , pp. 182
    • Yooseph, S.1    Li, W.2    Sutton, G.3
  • 50
    • 56249098614 scopus 로고    scopus 로고
    • The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    • Bowler C, et al. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456 (7219):239-244.
    • (2008) Nature , vol.456 , Issue.7219 , pp. 239-244
    • Bowler, C.1
  • 53
    • 47249139915 scopus 로고    scopus 로고
    • CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
    • Chatterji S, et al. (2008) CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads. Res Comput Mol Biol, 17-28.
    • (2008) Res Comput Mol Biol , pp. 17-28
    • Chatterji, S.1
  • 55
    • 69549135124 scopus 로고    scopus 로고
    • Phymm and PhymmBL: Metagenomic phylogenetic classification with interpolated Markov models
    • Brady A, Salzberg SL. (2009) Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat Methods, 6(9):673-676.
    • (2009) Nat Methods , vol.6 , Issue.9 , pp. 673-676
    • Brady, A.1    Salzberg, S.L.2
  • 56
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul S, et al. (1990) Basic local alignment search tool. J Mol Biol, 215(3):403-410.
    • (1990) J Mol Biol , vol.215 , Issue.3 , pp. 403-410
    • Altschul, S.1
  • 58
    • 0035133496 scopus 로고    scopus 로고
    • Fitting multivariate models to community data: A comment on distance-based redundancy analysis
    • McArdle B, Anderson M. (2001) Fitting multivariate models to community data: a comment on distance-based redundancy analysis. Ecology, 82(1):290-297. (Pubitemid 32106404)
    • (2001) Ecology , vol.82 , Issue.1 , pp. 290-297
    • McArdle, B.H.1    Anderson, M.J.2
  • 59
    • 33845900991 scopus 로고    scopus 로고
    • Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables
    • Zapala MA, Schork NJ. Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables. Proc Natl Acad Sci U S A, 103(51):19430-19435.
    • Proc Natl Acad Sci USA , vol.103 , Issue.51 , pp. 19430-19435
    • Zapala, M.A.1    Schork, N.J.2
  • 60
    • 60849095134 scopus 로고    scopus 로고
    • Quantifying environmental adaptation of metabolic pathways in metagenomics
    • Gianoulis TA, et al. (2009) Quantifying environmental adaptation of metabolic pathways in metagenomics. Proc Natl Acad Sci U S A, 106(5):1374-1379.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.5 , pp. 1374-1379
    • Gianoulis, T.A.1
  • 61
    • 54949137701 scopus 로고    scopus 로고
    • MetaSim: A sequencing simulator for genomics and metagenomics
    • Richter DC, et al. (2008) MetaSim: a sequencing simulator for genomics and metagenomics. PLoS One, 3(10):e3373.
    • (2008) PLoS One , vol.3 , Issue.10
    • Richter, D.C.1
  • 64
    • 26844447711 scopus 로고    scopus 로고
    • Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community
    • DOI 10.1128/AEM.71.10.6319-6324.2005
    • Tyson GW, et al. (2005) Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Appl Environ Microbiol, 71(10):6319-6324. (Pubitemid 41456932)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.10 , pp. 6319-6324
    • Tyson, G.W.1    Lo, I.2    Baker, B.J.3    Allen, E.E.4    Hugenholtz, P.5    Banfield, J.F.6
  • 66
    • 84855865926 scopus 로고    scopus 로고
    • Genomes OnLine Database: Metagenome Projects
    • Genomes OnLine Database: Metagenome Projects. (2009) [http://www. genomesonline.org/gold.cgi?want=Metagenomes].
    • (2009)
  • 67
    • 39149124249 scopus 로고    scopus 로고
    • Metagenomics of the deep Mediterranean, a warm bathypelagic habitat
    • Martin-Cuadrado AB, et al. (2007) Metagenomics of the deep Mediterranean, a warm bathypelagic habitat. PLoS ONE, 2(9):e914.
    • (2007) PLoS ONE , vol.2 , Issue.9
    • Martin-Cuadrado, A.B.1
  • 68
    • 40149098974 scopus 로고    scopus 로고
    • Microbial ecology of four coral atolls in the Northern Line Islands
    • Dinsdale EA, et al. (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE, 3(2):e1584.
    • (2008) PLoS ONE , vol.3 , Issue.2
    • Dinsdale, E.A.1
  • 70
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Beja O, et al. (2000) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science, 289(5486):1902-1906.
    • (2000) Science , vol.289 , Issue.5486 , pp. 1902-1906
    • Beja, O.1
  • 72
    • 70349286423 scopus 로고    scopus 로고
    • Soil genomics
    • Singh BK, et al. (2009) Soil genomics. Nat Rev Micro, 7(10):756.
    • (2009) Nat Rev Micro , vol.7 , Issue.10 , pp. 756
    • Singh, B.K.1
  • 74
    • 23944525404 scopus 로고    scopus 로고
    • Microbiology: Computational improvements reveal great bacterial diversity and high toxicity in soil
    • DOI 10.1126/science.1112665
    • Gans J, Wolinsky M, Dunbar J. (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science, 309(5739):1387-1390. (Pubitemid 41209368)
    • (2005) Science , vol.309 , Issue.5739 , pp. 1387-1390
    • Gans, J.1    Wolinsky, M.2    Dunbar, J.3
  • 75
    • 63049092891 scopus 로고    scopus 로고
    • TerraGenome: A consortium for the sequencing of a soil metagenome
    • Vogel TM, et al. (2009) TerraGenome: a consortium for the sequencing of a soil metagenome. Nat Rev Micro, 7(4):252.
    • (2009) Nat Rev Micro , vol.7 , Issue.4 , pp. 252
    • Vogel, T.M.1
  • 76
    • 70349292555 scopus 로고    scopus 로고
    • To sequence or not to sequence the whole-soil metagenome?
    • Baveye PC. (2009) To sequence or not to sequence the whole-soil metagenome? Nat Rev Micro, 7(10):756.
    • (2009) Nat Rev Micro , vol.7 , Issue.10 , pp. 756
    • Baveye, P.C.1
  • 80
    • 60749121732 scopus 로고    scopus 로고
    • Phylogenetic diversity of Acidobacteria in a former agricultural soil
    • Kielak A, et al. (2009) Phylogenetic diversity of Acidobacteria in a former agricultural soil. ISME J, 3(3):378-382.
    • (2009) ISME J , vol.3 , Issue.3 , pp. 378-382
    • Kielak, A.1
  • 83
    • 53949095625 scopus 로고    scopus 로고
    • The metagenomics of disease-suppressive soils - Experiences from the METACONTROL project
    • van Elsas JD, et al. (2008) The metagenomics of disease-suppressive soils - experiences from the METACONTROL project. Trends Biotechnol, 26(11):591-601.
    • (2008) Trends Biotechnol , vol.26 , Issue.11 , pp. 591-601
    • Van Elsas, J.D.1
  • 84
    • 65549136340 scopus 로고    scopus 로고
    • Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase
    • Pang H, et al. (2009) Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase. Curr Microbiol, 58 (4):404-408.
    • (2009) Curr Microbiol , vol.58 , Issue.4 , pp. 404-408
    • Pang, H.1
  • 85
    • 31144458334 scopus 로고    scopus 로고
    • Sampling the antibiotic resistome
    • DOI 10.1126/science.1120800
    • D'Costa VM, et al. (2006) Sampling the antibiotic resistome. Science, 311 (5759):374-377. (Pubitemid 43132661)
    • (2006) Science , vol.311 , Issue.5759 , pp. 374-377
    • D'Costa, V.M.1    McGrann, K.M.2    Hughes, D.W.3    Wright, G.D.4
  • 86
    • 35748929920 scopus 로고    scopus 로고
    • Expanding the soil antibiotic resistome: exploring environmental diversity
    • DOI 10.1016/j.mib.2007.08.009, PII S136952740700121X, Antimicrobials/Genomics
    • D'Costa VM, Griffiths E, Wright GD. (2007) Expanding the soil antibiotic resistome: exploring environmental diversity. Curr Opin Microbiol, 10(5):481-489. (Pubitemid 350052688)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.5 , pp. 481-489
    • D'Costa, V.M.1    Griffiths, E.2    Wright, G.D.3
  • 87
    • 70350530826 scopus 로고    scopus 로고
    • Identifying natural product biosynthetic genes from a soil metagenome by using T7 phage selection
    • Zhang K, et al. (2009) Identifying natural product biosynthetic genes from a soil metagenome by using T7 phage selection. Chembiochem, 10(16):2599-2606.
    • (2009) Chembiochem , vol.10 , Issue.16 , pp. 2599-2606
    • Zhang, K.1
  • 88
    • 67349208005 scopus 로고    scopus 로고
    • A new approach to retrieve full lengths of functional genes from soil by PCR-DGGE and metagenome walking
    • Morimoto S, Fujii T. (2009) A new approach to retrieve full lengths of functional genes from soil by PCR-DGGE and metagenome walking. Appl Microbiol Biotechnol, 83 (2):389-396.
    • (2009) Appl Microbiol Biotechnol , vol.83 , Issue.2 , pp. 389-396
    • Morimoto, S.1    Fujii, T.2
  • 89
    • 67651249844 scopus 로고    scopus 로고
    • Isolation and characterization of a novel lysine racemase from a soil metagenomic library
    • Chen IC, et al. (2009) Isolation and characterization of a novel lysine racemase from a soil metagenomic library. Appl Environ Microbiol, 75(15):5161-5166.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.15 , pp. 5161-5166
    • Chen, I.C.1
  • 96
    • 38449088143 scopus 로고    scopus 로고
    • Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
    • Kurokawa K, et al. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res, 14(4):169-181.
    • (2007) DNA Res , vol.14 , Issue.4 , pp. 169-181
    • Kurokawa, K.1
  • 97
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464:59-67.
    • (2010) Nature , vol.464 , pp. 59-67
    • Qin, J.1
  • 98
    • 65449134335 scopus 로고    scopus 로고
    • Assembling the marine metagenome, one cell at a time
    • Woyke T, et al. (2009) Assembling the marine metagenome, one cell at a time. PLoS ONE, 4(4):e5299.
    • (2009) PLoS ONE , vol.4 , Issue.4
    • Woyke, T.1
  • 99
    • 35748983784 scopus 로고    scopus 로고
    • Single-cell genomic sequencing using Multiple Displacement Amplification
    • DOI 10.1016/j.mib.2007.08.005, PII S1369527407001191, Antimicrobials/Genomics
    • Lasken RS. (2007) Single-cell genomic sequencing using multiple displacement amplification. Curr Opin Microbiol, 10 (5):510-516. (Pubitemid 350052686)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.5 , pp. 510-516
    • Lasken, R.S.1
  • 100
    • 58149234737 scopus 로고    scopus 로고
    • Real-time DNA sequencing from single polymerase molecules
    • Eid J, et al. (2009) Real-time DNA sequencing from single polymerase molecules. Science, 323(5910):133-138.
    • (2009) Science , vol.323 , Issue.5910 , pp. 133-138
    • Eid, J.1
  • 101
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez V, Teal TK, Schmidt TM. (2009)Systematic artifacts in metagenomes from complex microbial communities. ISME J, 3(11):1314-1317.
    • (2009) ISME J , vol.3 , Issue.11 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 102
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: Pyrosequencing errors lead to artificial inflation of diversity estimates
    • Kunin V, et al. (2010) Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates. Environ Microbiol, 12(1):118-123.
    • (2010) Environ Microbiol , vol.12 , Issue.1 , pp. 118-123
    • Kunin, V.1
  • 103
    • 69549138144 scopus 로고    scopus 로고
    • Metagenomics vs Moore's Law
    • Editorial
    • Editorial. (2009) Metagenomics vs Moore's Law. Nat Methods, 6(9):623.
    • (2009) Nat Methods , vol.6 , Issue.9 , pp. 623
  • 104
    • 73949090104 scopus 로고    scopus 로고
    • Applications of ultra-high-throughput sequencing
    • Humana Press, Clifton, NJ
    • Fox S, Filichkin S, Mockler TC. (2009) Applications of Ultra-High-Throughput Sequencing. In Methods Molecular Biology, Humana Press, Clifton, NJ, 79-108.
    • (2009) Methods Molecular Biology , pp. 79-108
    • Fox, S.1    Filichkin, S.2    Mockler, T.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.