-
2
-
-
77957189436
-
ERAD ubiquitin ligases: Multifunctional tools for protein quality control and waste disposal in the endoplasmic reticulum
-
Mehnert, M., Sommer, T. & Jarosch, E. ERAD ubiquitin ligases: multifunctional tools for protein quality control and waste disposal in the endoplasmic reticulum. Bioessays 32, 905-913(2010).
-
(2010)
Bioessays
, vol.32
, pp. 905-913
-
-
Mehnert, M.1
Sommer, T.2
Jarosch, E.3
-
3
-
-
77957169824
-
Role of a ribosomeassociated E3 ubiquitin ligase in protein quality control
-
Bengtson, M. H. & Joazeiro, C. A. Role of a ribosomeassociated E3 ubiquitin ligase in protein quality control. Nature 467, 470-473(2010).
-
(2010)
Nature
, vol.467
, pp. 470-473
-
-
Bengtson, M.H.1
Joazeiro, C.A.2
-
4
-
-
79955982521
-
Structure, function and mechanism of the anaphase promoting complex (APC/C)
-
Barford, D. Structure, function and mechanism of the anaphase promoting complex (APC/C). Q. Rev. Biophys. 44, 153-190(2011).
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 153-190
-
-
Barford, D.1
-
5
-
-
70549100903
-
Regulation of cell death by the ubiquitin-proteasome system
-
Bader, M. & Steller, H. Regulation of cell death by the ubiquitin-proteasome system. Curr. Opin. Cell Biol. 21, 878-884(2009).
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, pp. 878-884
-
-
Bader, M.1
Steller, H.2
-
6
-
-
78649492271
-
The ubiquitous role of ubiquitin in the DNA damage response
-
Al Hakim, A. et al. The ubiquitous role of ubiquitin in the DNA damage response. DNA Repair (Amst.) 9, 1229-1240(2010).
-
(2010)
DNA Repair (Amst.)
, vol.9
, pp. 1229-1240
-
-
Al Hakim, A.1
-
7
-
-
0033525086
-
The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation
-
DOI 10.1074/jbc.274.6.3363
-
Kisselev, A. F., Akopian, T. N., Woo, K. M. & Goldberg, A. L. The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation. J. Biol. Chem. 274, 3363-3371(1999). (Pubitemid 29077173)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.6
, pp. 3363-3371
-
-
Kisselev, A.F.1
Akopian, T.N.2
Woo, K.M.3
Goldberg, A.L.4
-
8
-
-
33746786326
-
Proteasome-mediated protein processing by bidirectional degradation initiated from an internal site
-
DOI 10.1038/nsmb1122, PII NSMB1122
-
Piwko, W. & Jentsch, S. Proteasome-mediated protein processing by bidirectional degradation initiated from an internal site. Nature Struct. Mol. Biol. 13, 691-697(2006). (Pubitemid 44175161)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.8
, pp. 691-697
-
-
Piwko, W.1
Jentsch, S.2
-
9
-
-
50149086108
-
Diversity of degradation signals in the ubiquitin-proteasome system
-
Ravid, T. & Hochstrasser, M. Diversity of degradation signals in the ubiquitin-proteasome system. Nature Rev. Mol. Cell Biol. 9, 679-690(2008).
-
(2008)
Nature Rev. Mol. Cell Biol.
, vol.9
, pp. 679-690
-
-
Ravid, T.1
Hochstrasser, M.2
-
10
-
-
79960683356
-
The N-end rule pathway and regulation by proteolysis
-
Varshavsky, A. The N-end rule pathway and regulation by proteolysis. Protein Sci. 20, 1298-1345(2011).
-
(2011)
Protein Sci.
, vol.20
, pp. 1298-1345
-
-
Varshavsky, A.1
-
11
-
-
63649113699
-
Origin and function of ubiquitin-like proteins
-
Hochstrasser, M. Origin and function of ubiquitin-like proteins. Nature 458, 422-429(2009).
-
(2009)
Nature
, vol.458
, pp. 422-429
-
-
Hochstrasser, M.1
-
12
-
-
56449118262
-
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis
-
Pearce, M. J., Mintseris, J., Ferreyra, J., Gygi, S. P. & Darwin, K. H. Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science 322, 1104-1107(2008).
-
(2008)
Science
, vol.322
, pp. 1104-1107
-
-
Pearce, M.J.1
Mintseris, J.2
Ferreyra, J.3
Gygi, S.P.4
Darwin, K.H.5
-
13
-
-
77951527421
-
Pupylation versus ubiquitylation: Tagging for proteasome-dependent degradation
-
Burns, K. E. & Darwin, K. H. Pupylation versus ubiquitylation: tagging for proteasome-dependent degradation. Cell. Microbiol. 12, 424-431(2010).
-
(2010)
Cell. Microbiol.
, vol.12
, pp. 424-431
-
-
Burns, K.E.1
Darwin, K.H.2
-
14
-
-
73849149089
-
Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii
-
Humbard, M. A. et al. Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii. Nature 463, 54-60(2010).
-
(2010)
Nature
, vol.463
, pp. 54-60
-
-
Humbard, M.A.1
-
15
-
-
79952729890
-
E1-and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea
-
Miranda, H. V. et al. E1-and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea. Proc. Natl Acad. Sci. USA 108, 4417-4422(2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 4417-4422
-
-
Miranda, H.V.1
-
16
-
-
0032488846
-
The proteasome: Paradigm of a self-compartmentalizing protease
-
DOI 10.1016/S0092-8674(00)80929-0
-
Baumeister, W., Walz, J., Zuhl, F. & Seemuller, E. The proteasome: paradigm of a self-compartmentalizing protease. Cell 92, 367-380(1998). (Pubitemid 28093014)
-
(1998)
Cell
, vol.92
, Issue.3
, pp. 367-380
-
-
Baumeister, W.1
Walz, J.2
Zuhl, F.3
Seemuller, E.4
-
17
-
-
33749234748
-
Proteasomes and their associated ATPases: A destructive combination
-
DOI 10.1016/j.jsb.2006.04.012, PII S1047847706001547, AAA + Proteins
-
Smith, D. M., Benaroudj, N. & Goldberg, A. Proteasomes and their associated ATPases: a destructive combination. J. Struct. Biol. 156, 72-83(2006). (Pubitemid 44486067)
-
(2006)
Journal of Structural Biology
, vol.156
, Issue.1
, pp. 72-83
-
-
Smith, D.M.1
Benaroudj, N.2
Goldberg, A.3
-
18
-
-
33646910002
-
20S proteasomes have the potential to keep substrates in store for continual degradation
-
DOI 10.1074/jbc.M511951200
-
Sharon, M. et al. 20S proteasomes have the potential to keep substrates in store for continual degradation. J. Biol. Chem. 281, 9569-9575(2006). (Pubitemid 43864675)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.14
, pp. 9569-9575
-
-
Sharon, M.1
Witt, S.2
Felderer, K.3
Rockel, B.4
Baumeister, W.5
Robinson, C.V.6
-
19
-
-
77957970501
-
The proteasome antechamber maintains substrates in an unfolded state
-
Ruschak, A. M., Religa, T. L., Breuer, S., Witt, S. & Kay, L. E. The proteasome antechamber maintains substrates in an unfolded state. Nature 467, 868-871(2010).
-
(2010)
Nature
, vol.467
, pp. 868-871
-
-
Ruschak, A.M.1
Religa, T.L.2
Breuer, S.3
Witt, S.4
Kay, L.E.5
-
20
-
-
33748581658
-
Proteasomes from Structure to Function: Perspectives from Archaea
-
DOI 10.1016/S0070-2153(06)75005-0, PII S0070215306750050
-
Maupin-Furlow, J. A. et al. Proteasomes from structure to function: perspectives from Archaea. Curr. Top. Dev. Biol. 75, 125-169(2006). (Pubitemid 44375084)
-
(2006)
Current Topics in Developmental Biology
, vol.75
, pp. 125-169
-
-
Maupin-Furlow, J.A.1
Humbard, M.A.2
Kirkland, P.A.3
Li, W.4
Reuter, C.J.5
Wright, A.J.6
Zhou, G.7
-
22
-
-
67549150995
-
α-acetylation and protein levels as well as growth rate and stress responses of Haloferax volcanii
-
α-acetylation and protein levels as well as growth rate and stress responses of Haloferax volcanii. J. Bacteriol. 191, 3794-3803(2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3794-3803
-
-
Humbard, M.A.1
Zhou, G.2
Maupin-Furlow, J.A.3
-
23
-
-
0034681428
-
Nα-acetylation and proteolytic activity of the yeast 20 S proteasome
-
DOI 10.1074/jbc.275.7.4635
-
Kimura, Y. et al. Nα-acetylation and proteolytic activity of the yeast 20 S proteasome. J. Biol. Chem. 275, 4635-4639(2000). (Pubitemid 30108848)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.7
, pp. 4635-4639
-
-
Kimura, Y.1
Takaoka, M.2
Tanaka, S.3
Sassa, H.4
Tanaka, K.5
Polevoda, B.6
Sherman, F.7
Hirano, H.8
-
24
-
-
0043192299
-
The pore of activated 20S proteasomes has an ordered 7-fold symmetric conformation
-
DOI 10.1093/emboj/cdg436
-
Forster, A., Whitby, F. G. & Hill, C. P. The pore of activated 20S proteasomes has an ordered 7-fold symmetric conformation. EMBO J. 22, 4356-4364(2003). (Pubitemid 37087190)
-
(2003)
EMBO Journal
, vol.22
, Issue.17
, pp. 4356-4364
-
-
Forster, A.1
Whitby, F.G.2
Hill, C.P.3
-
25
-
-
0030897031
-
Structure of 20S proteasome from yeast at 2.4 A resolution
-
DOI 10.1038/386463a0
-
Groll, M. et al. Structure of 20S proteasome from yeast at 2.4 Å resolution. Nature 386, 463-471(1997). (Pubitemid 27164066)
-
(1997)
Nature
, vol.386
, Issue.6624
, pp. 463-471
-
-
Groll, M.1
Ditzel, L.2
Lowe, J.3
Stock, D.4
Bochtler, M.5
Bartunik, H.D.6
Huber, R.7
-
26
-
-
0036191586
-
Structure determination of the constitutive 20S proteasome from bovine liver at 2.75 A resolution
-
Unno, M. et al. Structure determination of the constitutive 20S proteasome from bovine liver at 2.75 Å resolution. J. Biochem. 131, 171-173(2002). (Pubitemid 34194350)
-
(2002)
Journal of Biochemistry
, vol.131
, Issue.2
, pp. 171-173
-
-
Unno, M.1
Mizushima, T.2
Morimoto, Y.3
Tomisugi, Y.4
Tanaka, K.5
Yasuoka, N.6
Tsukihara, T.7
-
27
-
-
0035070672
-
The substrate translocation channel of the proteasome
-
DOI 10.1016/S0300-9084(01)01242-1
-
Kohler, A. et al. The substrate translocation channel of the proteasome. Biochimie 83, 325-332(2001). (Pubitemid 32293653)
-
(2001)
Biochimie
, vol.83
, Issue.3-4
, pp. 325-332
-
-
Kohler, A.1
Bajorek, M.2
Groll, M.3
Moroder, L.4
Rubin, D.M.5
Huber, R.6
Glickman, M.H.7
Finley, D.8
-
28
-
-
77950497745
-
Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR
-
Religa, T. L., Sprangers, R. & Kay, L. E. Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR. Science 328, 98-102(2010).
-
(2010)
Science
, vol.328
, pp. 98-102
-
-
Religa, T.L.1
Sprangers, R.2
Kay, L.E.3
-
29
-
-
0037436376
-
Investigations on the maturation and regulation of archaebacterial proteasomes
-
DOI 10.1016/S0022-2836(03)00080-9
-
Groll, M., Brandstetter, H., Bartunik, H., Bourenkow, G. & Huber, R. Investigations on the maturation and regulation of archaebacterial proteasomes. J. Mol. Biol. 327, 75-83(2003). (Pubitemid 36293303)
-
(2003)
Journal of Molecular Biology
, vol.327
, Issue.1
, pp. 75-83
-
-
Groll, M.1
Brandstetter, H.2
Bartunik, H.3
Bourenkow, G.4
Huber, R.5
-
30
-
-
33645053287
-
Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate
-
Hu, G. et al. Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate. Mol. Microbiol. 59, 1417-1428(2006).
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1417-1428
-
-
Hu, G.1
-
31
-
-
0029042511
-
Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 Å resolution
-
Lowe, J. et al. Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 Å resolution. Science 268, 533-539(1995).
-
(1995)
Science
, vol.268
, pp. 533-539
-
-
Lowe, J.1
-
32
-
-
42949096020
-
Mechanism of Gate Opening in the 20S Proteasome by the Proteasomal ATPases
-
DOI 10.1016/j.molcel.2008.03.004, PII S1097276508001755
-
Rabl, J. et al. Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases. Mol. Cell 30, 360-368(2008). (Pubitemid 351615314)
-
(2008)
Molecular Cell
, vol.30
, Issue.3
, pp. 360-368
-
-
Rabl, J.1
Smith, D.M.2
Yu, Y.3
Chang, S.-C.4
Goldberg, A.L.5
Cheng, Y.6
-
33
-
-
76349089770
-
Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions
-
Yu, Y. et al. Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions. EMBO J. 29, 692-702(2010).
-
(2010)
EMBO J.
, vol.29
, pp. 692-702
-
-
Yu, Y.1
-
34
-
-
33645073409
-
Mycobacterium tuberculosis prcBA genes encode a gated proteasome with broad oligopeptide specificity
-
Lin, G. et al. Mycobacterium tuberculosis prcBA genes encode a gated proteasome with broad oligopeptide specificity. Mol. Microbiol. 59, 1405-1416(2006).
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1405-1416
-
-
Lin, G.1
-
35
-
-
77953620707
-
Structural basis for the assembly and gate closure mechanisms of the Mycobacterium tuberculosis 20S proteasome
-
Li, D. et al. Structural basis for the assembly and gate closure mechanisms of the Mycobacterium tuberculosis 20S proteasome. EMBO J. 29, 2037-2047(2010).
-
(2010)
EMBO J.
, vol.29
, pp. 2037-2047
-
-
Li, D.1
-
36
-
-
65649091692
-
Structural insights into the regulatory particle of the proteasome from Methanocaldococcus jannaschii
-
Zhang, F. et al. Structural insights into the regulatory particle of the proteasome from Methanocaldococcus jannaschii. Mol. Cell 34, 473-484(2009).
-
(2009)
Mol. Cell
, vol.34
, pp. 473-484
-
-
Zhang, F.1
-
37
-
-
0037248908
-
ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation
-
DOI 10.1016/S1097-2765(02)00775-X
-
Benaroudj, N., Zwickl, P., Seemuller, E., Baumeister, W. & Goldberg, A. L. ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation. Mol. Cell 11, 69-78(2003). (Pubitemid 36126591)
-
(2003)
Molecular Cell
, vol.11
, Issue.1
, pp. 69-78
-
-
Benaroudj, N.1
Zwickl, P.2
Seemuller, E.3
Baumeister, W.4
Goldberg, A.L.5
-
38
-
-
34548274872
-
Docking of the Proteasomal ATPases' Carboxyl Termini in the 20S Proteasome's α Ring Opens the Gate for Substrate Entry
-
DOI 10.1016/j.molcel.2007.06.033, PII S1097276507004455
-
Smith, D. M. et al. Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's α ring opens the gate for substrate entry. Mol. Cell 27, 731-744(2007). (Pubitemid 47333222)
-
(2007)
Molecular Cell
, vol.27
, Issue.5
, pp. 731-744
-
-
Smith, D.M.1
Chang, S.-C.2
Park, S.3
Finley, D.4
Cheng, Y.5
Goldberg, A.L.6
-
39
-
-
79955932041
-
Order of the proteasomal ATPases and eukaryotic proteasome assembly
-
Tomko, R. J. Jr & Hochstrasser, M. Order of the proteasomal ATPases and eukaryotic proteasome assembly. Cell Biochem. Biophys. 60, 13-20(2011).
-
(2011)
Cell Biochem. Biophys.
, vol.60
, pp. 13-20
-
-
Tomko Jr., R.J.1
Hochstrasser, M.2
-
40
-
-
78649289427
-
ATP-dependent steps in the binding of ubiquitin conjugates to the 26S proteasome that commit to degradation
-
Peth, A., Uchiki, T. & Goldberg, A. L. ATP-dependent steps in the binding of ubiquitin conjugates to the 26S proteasome that commit to degradation. Mol. Cell 40, 671-681(2010).
-
(2010)
Mol. Cell
, vol.40
, pp. 671-681
-
-
Peth, A.1
Uchiki, T.2
Goldberg, A.L.3
-
41
-
-
79955470830
-
Trimming of ubiquitin chains by proteasomeassociated deubiquitinating enzymes
-
Lee, M. J., Lee, B. H., Hanna, J., King, R. W. & Finley, D. Trimming of ubiquitin chains by proteasomeassociated deubiquitinating enzymes. Mol. Cell. Proteomics 10, R110.003871(2011).
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Lee, M.J.1
Lee, B.H.2
Hanna, J.3
King, R.W.4
Finley, D.5
-
42
-
-
80053299005
-
Cdc48: A power machine in protein degradation
-
Stolz, A., Hilt, W., Buchberger, A. & Wolf, D. H. Cdc48: a power machine in protein degradation. Trends Biochem. Sci. 36, 515-523(2011).
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 515-523
-
-
Stolz, A.1
Hilt, W.2
Buchberger, A.3
Wolf, D.H.4
-
43
-
-
77950524360
-
The mycobacterial Mpa-proteasome unfolds and degrades pupylated substrates by engaging Pup's N-terminus
-
Striebel, F., Hunkeler, M., Summer, H. & Weber-Ban, E. The mycobacterial Mpa-proteasome unfolds and degrades pupylated substrates by engaging Pup's N-terminus. EMBO J. 29, 1262-1271(2010).
-
(2010)
EMBO J.
, vol.29
, pp. 1262-1271
-
-
Striebel, F.1
Hunkeler, M.2
Summer, H.3
Weber-Ban, E.4
-
44
-
-
70349770896
-
Structural insights on the Mycobacterium tuberculosis proteasomal ATPase Mpa
-
Wang, T. et al. Structural insights on the Mycobacterium tuberculosis proteasomal ATPase Mpa. Structure 17, 1377-1385(2009).
-
(2009)
Structure
, vol.17
, pp. 1377-1385
-
-
Wang, T.1
-
45
-
-
0033543648
-
An archaebacterial ATPase, homologous to ATPases in the eukaryotic 26 S proteasome, activates protein breakdown by 20 S proteasomes
-
Zwickl, P., Ng, D., Woo, K. M., Klenk, H. P. & Goldberg, A. L. An archaebacterial ATPase, homologous to ATPases in the eukaryotic 26 S proteasome, activates protein breakdown by 20 S proteasomes. J. Biol. Chem. 274, 26008-26014(1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 26008-26014
-
-
Zwickl, P.1
Ng, D.2
Woo, K.M.3
Klenk, H.P.4
Goldberg, A.L.5
-
46
-
-
70350334392
-
The nanny model for IDPs
-
Tsvetkov, P., Reuven, N. & Shaul, Y. The nanny model for IDPs. Nature Chem. Biol. 5, 778-781(2009).
-
(2009)
Nature Chem. Biol.
, vol.5
, pp. 778-781
-
-
Tsvetkov, P.1
Reuven, N.2
Shaul, Y.3
-
47
-
-
28444452611
-
ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins
-
DOI 10.1016/j.molcel.2005.10.019, PII S1097276505017144
-
Smith, D. M. et al. ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Mol. Cell 20, 687-698(2005). (Pubitemid 41740691)
-
(2005)
Molecular Cell
, vol.20
, Issue.5
, pp. 687-698
-
-
Smith, D.M.1
Kafri, G.2
Cheng, Y.3
Ng, D.4
Walz, T.5
Goldberg, A.L.6
-
48
-
-
69249123282
-
Architecture and molecular mechanism of PAN, the archaeal proteasome regulatory ATPase
-
Medalia, N. et al. Architecture and molecular mechanism of PAN, the archaeal proteasome regulatory ATPase. J. Biol. Chem. 284, 22952-22960(2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22952-22960
-
-
Medalia, N.1
-
49
-
-
0028533610
-
Critical elements in proteasome assembly
-
Zwickl, P., Kleinz, J. & Baumeister, W. Critical elements in proteasome assembly. Nature Struct. Biol. 1, 765-770(1994).
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 765-770
-
-
Zwickl, P.1
Kleinz, J.2
Baumeister, W.3
-
50
-
-
0344687318
-
Crystal structures of the Rhodococcus proteasome with and without its pro-peptides: Implications for the role of the pro-peptide in proteasome assembly
-
DOI 10.1016/j.jmb.2003.08.029
-
Kwon, Y. D., Nagy, I., Adams, P. D., Baumeister, W. & Jap, B. K. Crystal structures of the Rhodococcus proteasome with and without its pro-peptides: implications for the role of the pro-peptide in proteasome assembly. J. Mol. Biol. 335, 233-245(2004). (Pubitemid 37494975)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.1
, pp. 233-245
-
-
Kwon, Y.D.1
Nagy, I.2
Adams, P.D.3
Baumeister, W.4
Jap, B.K.5
-
51
-
-
78049264771
-
The 26S proteasome: Assembly and function of a destructive machine
-
Gallastegui, N. & Groll, M. The 26S proteasome: assembly and function of a destructive machine. Trends Biochem. Sci. 35, 634-642(2010).
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 634-642
-
-
Gallastegui, N.1
Groll, M.2
-
52
-
-
79953150421
-
Not4 E3 ligase contributes to proteasome assembly and functional integrity in part through Ecm29
-
Panasenko, O. O. & Collart, M. A. Not4 E3 ligase contributes to proteasome assembly and functional integrity in part through Ecm29. Mol. Cell. Biol. 31, 1610-1623(2011).
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1610-1623
-
-
Panasenko, O.O.1
Collart, M.A.2
-
53
-
-
0031918337
-
Biochemical characterization of the 20S proteasome from the methanoarchaeon Methanosarcina thermophila
-
Maupin-Furlow, J. A., Aldrich, H. C. & Ferry, J. G. Biochemical characterization of the 20S proteasome from the methanoarchaeon Methanosarcina thermophila. J. Bacteriol. 180, 1480-1487(1998). (Pubitemid 28125733)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.6
, pp. 1480-1487
-
-
Maupin-Furlow, J.A.1
Aldrich, H.C.2
Ferry, J.G.3
-
54
-
-
0037214430
-
Subunit topology of two 20S proteasomes from Haloferax volcanii
-
DOI 10.1128/JB.185.1.165-174.2003
-
Kaczowka, S. J. & Maupin-Furlow, J. A. Subunit topology of two 20S proteasomes from Haloferax volcanii. J. Bacteriol. 185, 165-174(2003). (Pubitemid 36008834)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.1
, pp. 165-174
-
-
Kaczowka, S.J.1
Maupin-Furlow, J.A.2
-
55
-
-
85027955696
-
A conserved 20S proteasome assembly factor requires a C-terminal HbYX motif for proteasomal precursor binding
-
Kusmierczyk, A. R., Kunjappu, M. J., Kim, R. Y. & Hochstrasser, M. A conserved 20S proteasome assembly factor requires a C-terminal HbYX motif for proteasomal precursor binding. Nature Struct. Mol. Biol. 18, 622-629(2011).
-
(2011)
Nature Struct. Mol. Biol.
, vol.18
, pp. 622-629
-
-
Kusmierczyk, A.R.1
Kunjappu, M.J.2
Kim, R.Y.3
Hochstrasser, M.4
-
56
-
-
66449131251
-
Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases
-
Djuranovic, S. et al. Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases. Mol. Cell 34, 580-590(2009).
-
(2009)
Mol. Cell
, vol.34
, pp. 580-590
-
-
Djuranovic, S.1
-
57
-
-
78549254832
-
Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation
-
Wang, T., Darwin, K. H. & Li, H. Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation. Nature Struct. Mol. Biol. 17, 1352-1357(2010).
-
(2010)
Nature Struct. Mol. Biol.
, vol.17
, pp. 1352-1357
-
-
Wang, T.1
Darwin, K.H.2
Li, H.3
-
58
-
-
78650450552
-
Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution
-
Bohn, S. et al. Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution. Proc. Natl Acad. Sci. USA 107, 20992-20997(2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 20992-20997
-
-
Bohn, S.1
-
59
-
-
65649123769
-
Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from Methanocaldococcus jannaschii
-
Zhang, F. et al. Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from Methanocaldococcus jannaschii. Mol. Cell 34, 485-496(2009).
-
(2009)
Mol. Cell
, vol.34
, pp. 485-496
-
-
Zhang, F.1
-
60
-
-
79959389010
-
AAA+ proteases: ATP-fueled machines of protein destruction
-
Sauer, R. T. & Baker, T. A. AAA+ proteases: ATP-fueled machines of protein destruction. Annu. Rev. Biochem. 80, 587-612(2011).
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 587-612
-
-
Sauer, R.T.1
Baker, T.A.2
-
61
-
-
67749095289
-
Insights into the molecular architecture of the 26S proteasome
-
Nickell, S. et al. Insights into the molecular architecture of the 26S proteasome. Proc. Natl Acad. Sci. USA 106, 11943-11947(2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11943-11947
-
-
Nickell, S.1
-
62
-
-
84855199977
-
Proteasomal AAA-ATPases: Structure and function
-
23 Jul, doi:10.1016/j.bbamcr.2011.07.009
-
Bar-Nun, S. & Glickman, M. H. Proteasomal AAA-ATPases: structure and function. Biochim. Biophys. Acta 23 Jul. 2011 (doi:10.1016/j.bbamcr.2011.07.009) .
-
(2011)
Biochim. Biophys. Acta
-
-
Bar-Nun, S.1
Glickman, M.H.2
-
63
-
-
79951707743
-
ATP binds to proteasomal ATPases in pairs with distinct functional effects, implying an ordered reaction cycle
-
Smith, D. M., Fraga, H., Reis, C., Kafri, G. & Goldberg, A. L. ATP binds to proteasomal ATPases in pairs with distinct functional effects, implying an ordered reaction cycle. Cell 144, 526-538(2011).
-
(2011)
Cell
, vol.144
, pp. 526-538
-
-
Smith, D.M.1
Fraga, H.2
Reis, C.3
Kafri, G.4
Goldberg, A.L.5
-
64
-
-
0037135539
-
The C-terminal tails of HslU ATPase act as a molecular switch for activation of HslV peptidase
-
DOI 10.1074/jbc.M202793200
-
Seong, I. S. et al. The C-terminal tails of HslU ATPase act as a molecular switch for activation of HslV peptidase. J. Biol. Chem. 277, 25976-25982(2002). (Pubitemid 34967079)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.29
, pp. 25976-25982
-
-
Seong, I.S.1
Kang, M.S.2
Choi, M.K.3
Lee, J.W.4
Koh, O.J.5
Wang, J.6
Eom, S.H.7
Chung, C.H.8
-
65
-
-
0035184442
-
Nucleotide-dependent conformational changes in a protease-associated ATPase HslU
-
DOI 10.1016/S0969-2126(01)00670-0, PII S0969212601006700
-
Wang, J. et al. Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU. Structure 9, 1107-1116(2001). (Pubitemid 33092112)
-
(2001)
Structure
, vol.9
, Issue.11
, pp. 1107-1116
-
-
Wang, J.1
Song, J.J.2
Seong, I.S.3
Franklin, M.C.4
Kamtekar, S.5
Eom, S.H.6
Chung, C.H.7
-
66
-
-
77951945222
-
Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: Implications for proteasome structure and assembly
-
Tomko, R. J. Jr, Funakoshi, M., Schneider, K., Wang, J. & Hochstrasser, M. Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly. Mol. Cell 38, 393-403(2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 393-403
-
-
Tomko Jr., R.J.1
Funakoshi, M.2
Schneider, K.3
Wang, J.4
Hochstrasser, M.5
-
67
-
-
0141987892
-
Proteasome-mediated degradation of p21 via N-terminal ubiquitinylation
-
DOI 10.1016/S0092-8674(03)00755-4
-
Bloom, J., Amador, V., Bartolini, F., DeMartino, G. & Pagano, M. Proteasome-mediated degradation of p21 via N-terminal ubiquitinylation. Cell 115, 71-82(2003). (Pubitemid 37255319)
-
(2003)
Cell
, vol.115
, Issue.1
, pp. 71-82
-
-
Bloom, J.1
Amador, V.2
Bartolini, F.3
DeMartino, G.4
Pagano, M.5
-
68
-
-
63049125531
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
-
Xu, P. et al. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137, 133-145(2009).
-
(2009)
Cell
, vol.137
, pp. 133-145
-
-
Xu, P.1
-
69
-
-
67650064603
-
Linear polyubiquitination: A new regulator of NF-κB activation
-
Iwai, K. & Tokunaga, F. Linear polyubiquitination: a new regulator of NF-κB activation. EMBO Rep. 10, 706-713(2009).
-
(2009)
EMBO Rep.
, vol.10
, pp. 706-713
-
-
Iwai, K.1
Tokunaga, F.2
-
70
-
-
0030772933
-
Targeting of substrates to the 26S proteasome
-
Pickart, C. M. Targeting of substrates to the 26S proteasome. FASEB J. 11, 1055-1066(1997). (Pubitemid 27481430)
-
(1997)
FASEB Journal
, vol.11
, Issue.13
, pp. 1055-1066
-
-
Pickart, C.M.1
-
71
-
-
0028847989
-
A ubiquitin mutant with specific defects in DNA repair and multiubiquitination
-
Spence, J., Sadis, S., Haas, A. L. & Finley, D. A ubiquitin mutant with specific defects in DNA repair and multiubiquitination. Mol. Cell. Biol. 15, 1265-1273(1995).
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 1265-1273
-
-
Spence, J.1
Sadis, S.2
Haas, A.L.3
Finley, D.4
-
72
-
-
33749346301
-
Modification of proteins by ubiquitin and ubiquitin-like proteins
-
Kerscher, O., Felberbaum, R. & Hochstrasser, M. Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu. Rev. Cell Dev. Biol. 22, 159-180(2006).
-
(2006)
Annu. Rev. Cell Dev. Biol.
, vol.22
, pp. 159-180
-
-
Kerscher, O.1
Felberbaum, R.2
Hochstrasser, M.3
-
73
-
-
80053067622
-
The dual role of ubiquitin-like protein Urm1 as a protein modifier and sulfur carrier
-
Wang, F., Liu, M., Qiu, R. & Ji, C. The dual role of ubiquitin-like protein Urm1 as a protein modifier and sulfur carrier. Protein Cell 2, 612-619(2011).
-
(2011)
Protein Cell
, vol.2
, pp. 612-619
-
-
Wang, F.1
Liu, M.2
Qiu, R.3
Ji, C.4
-
74
-
-
39749117978
-
Operational definition of intrinsically unstructured protein sequences based on susceptibility to the 20S proteasome
-
DOI 10.1002/prot.21614
-
Tsvetkov, P. et al. Operational definition of intrinsically unstructured protein sequences based on susceptibility to the 20S proteasome. Proteins 70, 1357-1366(2008). (Pubitemid 351304095)
-
(2008)
Proteins: Structure, Function and Genetics
, vol.70
, Issue.4
, pp. 1357-1366
-
-
Tsvetkov, P.1
Asher, G.2
Paz, A.3
Reuven, N.4
Sussman, J.L.5
Silman, I.6
Shaul, Y.7
-
75
-
-
59649115172
-
Proteasomes can degrade a significant proportion of cellular proteins independent of ubiquitination
-
Baugh, J. M., Viktorova, E. G. & Pilipenko, E. V. Proteasomes can degrade a significant proportion of cellular proteins independent of ubiquitination. J. Mol. Biol. 386, 814-827(2009).
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 814-827
-
-
Baugh, J.M.1
Viktorova, E.G.2
Pilipenko, E.V.3
-
76
-
-
13244275245
-
A mechanism of ubiquitin-independent proteasomal degradation of the tumor suppressors p53 and p73
-
DOI 10.1101/gad.319905
-
Asher, G., Tsvetkov, P., Kahana, C. & Shaul, Y. A mechanism of ubiquitin-independent proteasomal degradation of the tumor suppressors p53 and p73. Genes Dev. 19, 316-321(2005). (Pubitemid 40189294)
-
(2005)
Genes and Development
, vol.19
, Issue.3
, pp. 316-321
-
-
Asher, G.1
Tsvetkov, P.2
Kahana, C.3
Shaul, Y.4
-
77
-
-
79956188690
-
Identification, assay, and functional analysis of the antizyme inhibitor family
-
Kahana, C. Identification, assay, and functional analysis of the antizyme inhibitor family. Methods Mol. Biol. 720, 269-278(2011).
-
(2011)
Methods Mol. Biol.
, vol.720
, pp. 269-278
-
-
Kahana, C.1
-
78
-
-
67649391054
-
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis
-
Darwin, K. H. Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis. Nature Rev. Microbiol. 7, 485-491(2009).
-
(2009)
Nature Rev. Microbiol.
, vol.7
, pp. 485-491
-
-
Darwin, K.H.1
-
79
-
-
70149094758
-
Pup, a prokaryotic ubiquitin-like protein, is an intrinsically disordered protein
-
Liao, S. et al. Pup, a prokaryotic ubiquitin-like protein, is an intrinsically disordered protein. Biochem. J. 422, 207-215(2009).
-
(2009)
Biochem. J.
, vol.422
, pp. 207-215
-
-
Liao, S.1
-
80
-
-
68949184714
-
Prokaryotic ubiquitin-like protein pup is intrinsically disordered
-
Chen, X. et al. Prokaryotic ubiquitin-like protein pup is intrinsically disordered. J. Mol. Biol. 392, 208-217(2009).
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 208-217
-
-
Chen, X.1
-
81
-
-
75149113560
-
Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo
-
Imkamp, F. et al. Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo. Mol. Microbiol. 75, 744-754(2010).
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 744-754
-
-
Imkamp, F.1
-
82
-
-
67349193285
-
Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes
-
Striebel, F. et al. Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes. Nature Struct. Mol. Biol. 16, 647-651(2009).
-
(2009)
Nature Struct. Mol. Biol.
, vol.16
, pp. 647-651
-
-
Striebel, F.1
-
83
-
-
77956162428
-
Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis
-
Cerda-Maira, F. A. et al. Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis. Mol. Microbiol. 77, 1123-1135(2010).
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1123-1135
-
-
Cerda-Maira, F.A.1
-
84
-
-
77952559910
-
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate
-
Sutter, M., Damberger, F. F., Imkamp, F., Allain, F. H. & Weber-Ban, E. Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate. J. Am. Chem. Soc. 132, 5610-5612(2010).
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 5610-5612
-
-
Sutter, M.1
Damberger, F.F.2
Imkamp, F.3
Allain, F.H.4
Weber-Ban, E.5
-
85
-
-
78549285675
-
"Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates
-
Burns, K. E. et al. "Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates. Mol. Cell 39, 821-827(2010).
-
(2010)
Mol. Cell
, vol.39
, pp. 821-827
-
-
Burns, K.E.1
-
86
-
-
77957231199
-
Dop functions as a depupylase in the prokaryotic ubiquitin-like modification pathway
-
Imkamp, F. et al. Dop functions as a depupylase in the prokaryotic ubiquitin-like modification pathway. EMBO Rep. 11, 791-797(2010).
-
(2010)
EMBO Rep.
, vol.11
, pp. 791-797
-
-
Imkamp, F.1
-
87
-
-
77952575956
-
Prokaryotic ubiquitin-like protein provides a two-part degron to Mycobacterium proteasome substrates
-
Burns, K. E., Pearce, M. J. & Darwin, K. H. Prokaryotic ubiquitin-like protein provides a two-part degron to Mycobacterium proteasome substrates. J. Bacteriol. 192, 2933-2935(2010).
-
(2010)
J. Bacteriol.
, vol.192
, pp. 2933-2935
-
-
Burns, K.E.1
Pearce, M.J.2
Darwin, K.H.3
-
88
-
-
79961022536
-
Reconstitution of the Mycobacterium tuberculosis pupylation pathway in Escherichia coli
-
Cerda-Maira, F. A. et al. Reconstitution of the Mycobacterium tuberculosis pupylation pathway in Escherichia coli. EMBO Rep. 12, 863-870(2011).
-
(2011)
EMBO Rep.
, vol.12
, pp. 863-870
-
-
Cerda-Maira, F.A.1
-
89
-
-
33747219426
-
The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like β-grasp domains
-
Iyer, L. M., Burroughs, A. M. & Aravind, L. The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like β-grasp domains. Genome Biol. 7, R60(2006).
-
(2006)
Genome Biol.
, vol.7
-
-
Iyer, L.M.1
Burroughs, A.M.2
Aravind, L.3
-
90
-
-
34548154812
-
Small but versatile: The extraordinary functional and structural diversity of the β-grasp fold
-
Burroughs, A. M., Balaji, S., Iyer, L. M. & Aravind, L. Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold. Biol. Direct. 2, 18(2007).
-
(2007)
Biol. Direct.
, vol.2
, pp. 18
-
-
Burroughs, A.M.1
Balaji, S.2
Iyer, L.M.3
Aravind, L.4
-
91
-
-
66149175454
-
Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation
-
Burroughs, A. M., Iyer, L. M. & Aravind, L. Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation. Proteins 75, 895-910(2009).
-
(2009)
Proteins
, vol.75
, pp. 895-910
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
92
-
-
79959214387
-
Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system
-
Burroughs, A. M., Iyer, L. M. & Aravind, L. Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system. Mol. Biosyst. 7, 2261-2277(2011).
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 2261-2277
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
93
-
-
19344364762
-
JAMM: A metalloprotease-like zinc site in the proteasome and signalosome
-
Ambroggio, X. I., Rees, D. C. & Deshaies, R. J. JAMM: a metalloprotease-like zinc site in the proteasome and signalosome. PLoS Biol. 2, e2(2004).
-
(2004)
PLoS Biol.
, vol.2
-
-
Ambroggio, X.I.1
Rees, D.C.2
Deshaies, R.J.3
-
94
-
-
0141706654
-
Structure of the Jab1/MPN domain and its implications for proteasome function
-
DOI 10.1021/bi035033g
-
Tran, H. J., Allen, M. D., Löwe, J. & Bycroft, M. Structure of the Jab1/MPN domain and its implications for proteasome function. Biochemistry 42, 11460-11465(2003). (Pubitemid 37205740)
-
(2003)
Biochemistry
, vol.42
, Issue.39
, pp. 11460-11465
-
-
Tran, H.J.T.T.1
Allen, M.D.2
Lowe, J.3
Bycroft, M.4
-
95
-
-
78249260025
-
Archaeal ubiquitin-like proteins: Functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis
-
Makarova, K. S. & Koonin, E. V. Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis. Archaea 2010, 710303(2010).
-
(2010)
Archaea
, vol.2010
, pp. 710303
-
-
Makarova, K.S.1
Koonin, E.V.2
-
96
-
-
79251595632
-
Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins
-
Ranjan, N., Damberger, F. F., Sutter, M., Allain, F. H. & Weber-Ban, E. Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins. J. Mol. Biol. 405, 1040-1055(2010).
-
(2010)
J. Mol. Biol.
, vol.405
, pp. 1040-1055
-
-
Ranjan, N.1
Damberger, F.F.2
Sutter, M.3
Allain, F.H.4
Weber-Ban, E.5
-
97
-
-
79551497252
-
Crystal structure of ubiquitin-like small archaeal modifier protein 1 (SAMP1) from Haloferax volcanii
-
Jeong, Y. J., Jeong, B. C. & Song, H. K. Crystal structure of ubiquitin-like small archaeal modifier protein 1 (SAMP1) from Haloferax volcanii. Biochem. Biophys. Res. Commun. 405, 112-117(2011).
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.405
, pp. 112-117
-
-
Jeong, Y.J.1
Jeong, B.C.2
Song, H.K.3
-
98
-
-
33748937557
-
A new side to ubiquitin
-
DOI 10.1016/j.tibs.2006.07.009, PII S0968000406002052
-
Raiborg, C., Slagsvold, T. & Stenmark, H. A new side to ubiquitin. Trends Biochem. Sci. 31, 541-544(2006). (Pubitemid 44436936)
-
(2006)
Trends in Biochemical Sciences
, vol.31
, Issue.10
, pp. 541-544
-
-
Raiborg, C.1
Slagsvold, T.2
Stenmark, H.3
-
99
-
-
79955598535
-
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
-
Nunoura, T. et al. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res. 39, 3204-3223(2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3204-3223
-
-
Nunoura, T.1
-
100
-
-
63649086487
-
Targeting the ubiquitin system in cancer therapy
-
Hoeller, D. & Dikic, I. Targeting the ubiquitin system in cancer therapy. Nature 458, 438-444(2009).
-
(2009)
Nature
, vol.458
, pp. 438-444
-
-
Hoeller, D.1
Dikic, I.2
-
101
-
-
0034266540
-
Proteasomes in the archaea: From structure to function
-
Maupin-Furlow, J. A., Wilson, H. L., Kaczowka, S. J. & Ou, M. S. Proteasomes in the archaea: from structure to function. Front. Biosci. 5, D837-D865(2000).
-
(2000)
Front. Biosci.
, vol.5
-
-
Maupin-Furlow, J.A.1
Wilson, H.L.2
Kaczowka, S.J.3
Ou, M.S.4
-
102
-
-
0034745504
-
Prediction of the archeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
DOI 10.1101/gr.162001
-
Koonin, E. V., Wolf, Y. I. & Aravind, L. Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res. 11, 240-252(2001). (Pubitemid 32166533)
-
(2001)
Genome Research
, vol.11
, Issue.2
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
103
-
-
34948861713
-
Transcriptional linkage of Haloferax volcanii proteasomal genes with non-proteasomal gene neighbours including RNase P, MOSC domain and SAM-methyltransferase homologues
-
DOI 10.1099/mic.0.2007/008177-0
-
Gil, M. A., Sherwood, K. E. & Maupin-Furlow, J. A. Transcriptional linkage of Haloferax volcanii proteasomal genes with non-proteasomal gene neighbours including RNase P, MOSC domain and SAM-methyltransferase homologues. Microbiology 153, 3009-3022(2007). (Pubitemid 47517062)
-
(2007)
Microbiology
, vol.153
, Issue.9
, pp. 3009-3022
-
-
Gil, M.A.1
Sherwood, K.E.2
Maupin-Furlow, J.A.3
-
104
-
-
0032549642
-
Proteasome function is dispensable under normal but not under heat shock conditions in Thermoplasma acidophiulum
-
DOI 10.1016/S0014-5793(98)00205-1, PII S0014579398002051
-
Ruepp, A., Eckerskorn, C., Bogyo, M. & Baumeister, W. Proteasome function is dispensable under normal but not under heat shock conditions in Thermoplasma acidophilum. FEBS Lett. 425, 87-90(1998). (Pubitemid 28149746)
-
(1998)
FEBS Letters
, vol.425
, Issue.1
, pp. 87-90
-
-
Ruepp, A.1
Eckerskorn, C.2
Bogyo, M.3
Baumeister, W.4
-
105
-
-
10444253995
-
Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins
-
DOI 10.1128/AEM.70.12.7530-7538.2004
-
Reuter, C. J. & Maupin-Furlow, J. A. Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins. Appl. Environ. Microbiol. 70, 7530-7538(2004). (Pubitemid 39643820)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.12
, pp. 7530-7538
-
-
Reuter, C.J.1
Maupin-Furlow, J.A.2
-
106
-
-
57349109341
-
Proteasomal components required for cell growth and stress responses in the haloarchaeon Haloferax volcanii
-
Zhou, G., Kowalczyk, D., Humbard, M. A., Rohatgi, S. & Maupin-Furlow, J. A. Proteasomal components required for cell growth and stress responses in the haloarchaeon Haloferax volcanii. J. Bacteriol. 190, 8096-8105(2008).
-
(2008)
J. Bacteriol.
, vol.190
, pp. 8096-8105
-
-
Zhou, G.1
Kowalczyk, D.2
Humbard, M.A.3
Rohatgi, S.4
Maupin-Furlow, J.A.5
-
107
-
-
37549052487
-
Genetic and proteomic analyses of a proteasome-activating nucleotidase A mutant of the haloarchaeon Haloferax volcanii
-
Kirkland, P. A., Gil, M. A., Karadzic, I. M. & Maupin-Furlow, J. A. Genetic and proteomic analyses of a proteasome-activating nucleotidase A mutant of the haloarchaeon Haloferax volcanii. J. Bacteriol. 190, 193-205(2008).
-
(2008)
J. Bacteriol.
, vol.190
, pp. 193-205
-
-
Kirkland, P.A.1
Gil, M.A.2
Karadzic, I.M.3
Maupin-Furlow, J.A.4
-
108
-
-
34447549162
-
Effect of proteasome inhibitor clasto-lactacystin-β-lactone on the proteome of the haloarchaeon Haloferax volcanii
-
DOI 10.1099/mic.0.2007/005769-0
-
Kirkland, P. A., Reuter, C. J. & Maupin-Furlow, J. A. Effect of proteasome inhibitor clasto-lactacystin-β-lactone on the proteome of the haloarchaeon Haloferax volcanii. Microbiology 153, 2271-2280(2007). (Pubitemid 47074080)
-
(2007)
Microbiology
, vol.153
, Issue.7
, pp. 2271-2280
-
-
Kirkland, P.A.1
Reuter, C.J.2
Maupin-Furlow, J.A.3
-
109
-
-
63849192439
-
Stabilization of an archaeal DNA-sliding clamp protein, PCNA, by proteasome-activating nucleotidase gene knockout in Haloferax volcanii
-
Kirkland, P. A. & Maupin-Furlow, J. A. Stabilization of an archaeal DNA-sliding clamp protein, PCNA, by proteasome-activating nucleotidase gene knockout in Haloferax volcanii. FEMS Microbiol. Lett. 294, 32-36(2009).
-
(2009)
FEMS Microbiol. Lett.
, vol.294
, pp. 32-36
-
-
Kirkland, P.A.1
Maupin-Furlow, J.A.2
-
110
-
-
0032836107
-
Halophilic 20S proteasomes of the archaeon Haloferax volcanii: Purification, characterization, and gene sequence analysis
-
Wilson, H. L., Aldrich, H. C. & Maupin-Furlow, J. Halophilic 20S proteasomes of the archaeon Haloferax volcanii: purification, characterization, and gene sequence analysis. J. Bacteriol. 181, 5814-5824(1999). (Pubitemid 29437155)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.18
, pp. 5814-5824
-
-
Wilson, H.L.1
Aldrich, H.C.2
Maupin-Furlow, J.3
-
111
-
-
77956998240
-
Phosphorylation and methylation of proteasomal proteins of the haloarcheon Haloferax volcanii
-
Humbard, M. A., Reuter, C. J., Zuobi-Hasona, K., Zhou, G. & Maupin-Furlow, J. A. Phosphorylation and methylation of proteasomal proteins of the haloarcheon Haloferax volcanii. Archaea 2010, 481725(2010).
-
(2010)
Archaea
, vol.2010
, pp. 481725
-
-
Humbard, M.A.1
Reuter, C.J.2
Zuobi-Hasona, K.3
Zhou, G.4
Maupin-Furlow, J.A.5
-
112
-
-
7744243704
-
Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii
-
DOI 10.1128/JB.186.22.7763-7772.2004
-
Reuter, C. J., Kaczowka, S. J. & Maupin-Furlow, J. A. Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii. J. Bacteriol. 186, 7763-7772(2004). (Pubitemid 39463743)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.22
, pp. 7763-7772
-
-
Reuter, C.J.1
Kaczowka, S.J.2
Maupin-Furlow, J.A.3
-
113
-
-
33846202873
-
Role of the β1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic Archaeon Pyrococcus furiosus
-
DOI 10.1128/JB.01382-06
-
Madding, L. S. et al. Role of the β1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 189, 583-590(2007). (Pubitemid 46106390)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.2
, pp. 583-590
-
-
Madding, L.S.1
Michel, J.K.2
Shockley, K.R.3
Conners, S.B.4
Epting, K.L.5
Johnson, M.R.6
Kelly, R.M.7
-
114
-
-
33750464206
-
Posttranslational modication of the 20S proteasomal proteins of the archaeon Haloferax volcanii
-
DOI 10.1128/JB.00943-06
-
Humbard, M. A., Stevens, S. M. Jr & Maupin-Furlow, J. A. Posttranslational modification of the 20S proteasomal proteins of the archaeon Haloferax volcanii. J. Bacteriol. 188, 7521-7530(2006). (Pubitemid 44646251)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.21
, pp. 7521-7530
-
-
Humbard, M.A.1
Stevens Jr., S.M.2
Maupin-Furlow, J.A.3
-
115
-
-
79952142375
-
Role of the ubiquitin-like protein Urm1 as a noncanonical lysine-directed protein modifier
-
Van der Veen, A. G. et al. Role of the ubiquitin-like protein Urm1 as a noncanonical lysine-directed protein modifier. Proc. Natl Acad. Sci. USA 108, 1763-1770(2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 1763-1770
-
-
Van Der Veen, A.G.1
-
116
-
-
33750083296
-
Enzymatic activation of sulfur for incorporation into biomolecules in prokaryotes
-
DOI 10.1111/j.1574-6976.2006.00036.x
-
Kessler, D. Enzymatic activation of sulfur for incorporation into biomolecules in prokaryotes. FEMS Microbiol. Rev. 30, 825-840(2006). (Pubitemid 44583791)
-
(2006)
FEMS Microbiology Reviews
, vol.30
, Issue.6
, pp. 825-840
-
-
Kessler, D.1
-
117
-
-
64549106859
-
Controlled destruction: AAA+ ATPases in protein degradation from bacteria to eukaryotes
-
Striebel, F., Kress, W. & Weber-Ban, E. Controlled destruction: AAA+ ATPases in protein degradation from bacteria to eukaryotes. Curr. Opin. Struct. Biol. 19, 209-217(2009).
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 209-217
-
-
Striebel, F.1
Kress, W.2
Weber-Ban, E.3
-
118
-
-
34250307901
-
Ubiquitination without E3
-
DOI 10.1016/j.molcel.2007.06.003, PII S1097276507003668
-
Sorkin, A. Ubiquitination without E3. Mol. Cell 26, 771-773(2007). (Pubitemid 46921013)
-
(2007)
Molecular Cell
, vol.26
, Issue.6
, pp. 771-773
-
-
Sorkin, A.1
-
119
-
-
44749085669
-
Thymoproteasome: Probable role in generating positively selecting peptides
-
Murata, S., Takahama, Y. & Tanaka, K. Thymoproteasome: probable role in generating positively selecting peptides. Curr. Opin. Immunol. 20, 192-196(2008).
-
(2008)
Curr. Opin. Immunol.
, vol.20
, pp. 192-196
-
-
Murata, S.1
Takahama, Y.2
Tanaka, K.3
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