-
1
-
-
63649113699
-
Origin and function of ubiquitin-like proteins
-
Hochstrasser M. Origin and function of ubiquitin-like proteins. Nature 2009, 458:422-429.
-
(2009)
Nature
, vol.458
, pp. 422-429
-
-
Hochstrasser, M.1
-
2
-
-
57149115173
-
Discovery of cellular regulation by protein degradation
-
Varshavsky A. Discovery of cellular regulation by protein degradation. J. Biol. Chem. 2008, 283:34469-34489.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 34469-34489
-
-
Varshavsky, A.1
-
3
-
-
77953108542
-
The diversity of ubiquitin recognition: hot spots and varied specificity
-
Winget J.M., Mayor T. The diversity of ubiquitin recognition: hot spots and varied specificity. Mol. Cell 2010, 38:627-635.
-
(2010)
Mol. Cell
, vol.38
, pp. 627-635
-
-
Winget, J.M.1
Mayor, T.2
-
4
-
-
0037515652
-
Structural studies of molybdopterin synthase provide insights into its catalytic mechanism
-
Rudolph M.J., Wuebbens M.M., Turque O., Rajagopalan K.V., Schindelin H. Structural studies of molybdopterin synthase provide insights into its catalytic mechanism. J. Biol. Chem. 2003, 278:14514-14522.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 14514-14522
-
-
Rudolph, M.J.1
Wuebbens, M.M.2
Turque, O.3
Rajagopalan, K.V.4
Schindelin, H.5
-
5
-
-
0035167185
-
Crystal structure of molybdopterin synthase and its evolutionary relationship to ubiquitin activation
-
Rudolph M.J., Wuebbens M.M., Rajagopalan K.V., Schindelin H. Crystal structure of molybdopterin synthase and its evolutionary relationship to ubiquitin activation. Nat. Struct. Biol. 2001, 8:42-46.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 42-46
-
-
Rudolph, M.J.1
Wuebbens, M.M.2
Rajagopalan, K.V.3
Schindelin, H.4
-
6
-
-
0033033183
-
The proteasome
-
Bochtler M., Ditzel L., Groll M., Hartmann C., Huber R. The proteasome. Annu. Rev. Biophys. Biomol. Struct. 1999, 28:295-317.
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 295-317
-
-
Bochtler, M.1
Ditzel, L.2
Groll, M.3
Hartmann, C.4
Huber, R.5
-
7
-
-
21144447324
-
Molecular machines for protein degradation
-
Groll M., Bochtler M., Brandstetter H., Clausen T., Huber R. Molecular machines for protein degradation. Chembiochem 2005, 6:222-256.
-
(2005)
Chembiochem
, vol.6
, pp. 222-256
-
-
Groll, M.1
Bochtler, M.2
Brandstetter, H.3
Clausen, T.4
Huber, R.5
-
8
-
-
0029861143
-
The N-end rule: functions, mysteries, uses
-
Varshavsky A. The N-end rule: functions, mysteries, uses. Proc. Natl. Acad. Sci. USA 1996, 93:12142-12149.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 12142-12149
-
-
Varshavsky, A.1
-
9
-
-
57149114713
-
The N-end rule at atomic resolution
-
Varshavsky A. The N-end rule at atomic resolution. Nat. Struct. Mol. Biol. 2008, 15:1238-1240.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1238-1240
-
-
Varshavsky, A.1
-
10
-
-
56449118262
-
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis
-
Pearce M.J., Mintseris J., Ferreyra J., Gygi S.P., Darwin K.H. Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science 2008, 322:1104-1107.
-
(2008)
Science
, vol.322
, pp. 1104-1107
-
-
Pearce, M.J.1
Mintseris, J.2
Ferreyra, J.3
Gygi, S.P.4
Darwin, K.H.5
-
11
-
-
67649391054
-
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis
-
Darwin K.H. Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis. Nat. Rev. Microbiol. 2009, 7:485-491.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 485-491
-
-
Darwin, K.H.1
-
12
-
-
73849149089
-
Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii
-
Humbard M.A., Miranda H.V., Lim J.M., Krause D.J., Pritz J.R., Zhou G., Chen S., Wells L., Maupin-Furlow J.A. Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii. Nature 2010, 463:54-60.
-
(2010)
Nature
, vol.463
, pp. 54-60
-
-
Humbard, M.A.1
Miranda, H.V.2
Lim, J.M.3
Krause, D.J.4
Pritz, J.R.5
Zhou, G.6
Chen, S.7
Wells, L.8
Maupin-Furlow, J.A.9
-
13
-
-
0027213027
-
Ubiquitin found in the archaebacterium Thermoplasma acidophilum
-
Wolf S., Lottspeich F., Baumeister W. Ubiquitin found in the archaebacterium Thermoplasma acidophilum. FEBS Lett. 1993, 326:42-44.
-
(1993)
FEBS Lett.
, vol.326
, pp. 42-44
-
-
Wolf, S.1
Lottspeich, F.2
Baumeister, W.3
-
15
-
-
78549254832
-
Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation
-
Wang T., Darwin K.H., Li H. Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation. Nat. Struct. Mol. Biol. 2010, 17:1352-1357.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1352-1357
-
-
Wang, T.1
Darwin, K.H.2
Li, H.3
-
18
-
-
77957805791
-
Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases
-
Choi W.S., Jeong B.C., Joo Y.J., Lee M.R., Kim J., Eck M.J., Song H.K. Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases. Nat. Struct. Mol. Biol. 2010, 17:1175-1181.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1175-1181
-
-
Choi, W.S.1
Jeong, B.C.2
Joo, Y.J.3
Lee, M.R.4
Kim, J.5
Eck, M.J.6
Song, H.K.7
-
19
-
-
78549285675
-
" Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates
-
Burns K.E., Cerda-Maira F.A., Wang T., Li H., Bishai W.R., Darwin K.H. " Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates. Mol. Cell 2010, 39:821-827.
-
(2010)
Mol. Cell
, vol.39
, pp. 821-827
-
-
Burns, K.E.1
Cerda-Maira, F.A.2
Wang, T.3
Li, H.4
Bishai, W.R.5
Darwin, K.H.6
-
20
-
-
67349193285
-
Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes
-
Striebel F., Imkamp F., Sutter M., Steiner M., Mamedov A., Weber-Ban E. Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes. Nat. Struct. Mol. Biol. 2009, 16:647-651.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 647-651
-
-
Striebel, F.1
Imkamp, F.2
Sutter, M.3
Steiner, M.4
Mamedov, A.5
Weber-Ban, E.6
-
21
-
-
70349467724
-
A distinct structural region of the prokaryotic ubiquitin-like protein (Pup) is recognized by the N-terminal domain of the proteasomal ATPase Mpa
-
Sutter M., Striebel F., Damberger F.F., Allain F.H., Weber-Ban E. A distinct structural region of the prokaryotic ubiquitin-like protein (Pup) is recognized by the N-terminal domain of the proteasomal ATPase Mpa. FEBS Lett. 2009, 583:3151-3157.
-
(2009)
FEBS Lett.
, vol.583
, pp. 3151-3157
-
-
Sutter, M.1
Striebel, F.2
Damberger, F.F.3
Allain, F.H.4
Weber-Ban, E.5
-
22
-
-
33847108004
-
Structural basis of SspB-tail recognition by the zinc binding domain of ClpX
-
Park E.Y., Lee B.G., Hong S.B., Kim H.W., Jeon H., Song H.K. Structural basis of SspB-tail recognition by the zinc binding domain of ClpX. J. Mol. Biol. 2007, 367:514-526.
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 514-526
-
-
Park, E.Y.1
Lee, B.G.2
Hong, S.B.3
Kim, H.W.4
Jeon, H.5
Song, H.K.6
-
23
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinoski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 1997, 276:307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinoski, Z.1
Minor, W.2
-
24
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., McCoy A.J., Moriarty N.W., Oeffner R., Read R.J., Richardson D.C., Richardson J.S., Terwilliger T.C., Zwart P.H. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:213-221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
25
-
-
37349110736
-
ARP/wARP and molecular replacement: the next generation
-
Cohen S.X., Ben Jelloul M., Long F., Vagin A., Knipscheer P., Lebbink J., Sixma T.K., Lamzin V.S., Murshudov G.N., Perrakis A. ARP/wARP and molecular replacement: the next generation. Acta Crystallogr. D Biol. Crystallogr. 2008, 64:49-60.
-
(2008)
Acta Crystallogr. D Biol. Crystallogr.
, vol.64
, pp. 49-60
-
-
Cohen, S.X.1
Ben Jelloul, M.2
Long, F.3
Vagin, A.4
Knipscheer, P.5
Lebbink, J.6
Sixma, T.K.7
Lamzin, V.S.8
Murshudov, G.N.9
Perrakis, A.10
-
27
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
Brunger A.T. Version 1.2 of the crystallography and NMR system. Nat. Protoc. 2007, 2:2728-2733.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
28
-
-
0000243829
-
Procheck - a program to check the stereochemical quality of protein structures
-
Laskowski R.A., Macarthur M.W., Moss D.S., Thornton J.M. Procheck - a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993, 26:283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
29
-
-
70149094758
-
Pup, a prokaryotic ubiquitin-like protein, is an intrinsically disordered protein
-
Liao S., Shang Q., Zhang X., Zhang J., Xu C., Tu X. Pup, a prokaryotic ubiquitin-like protein, is an intrinsically disordered protein. Biochem. J. 2009, 422:207-215.
-
(2009)
Biochem. J.
, vol.422
, pp. 207-215
-
-
Liao, S.1
Shang, Q.2
Zhang, X.3
Zhang, J.4
Xu, C.5
Tu, X.6
-
30
-
-
68949184714
-
Prokaryotic ubiquitin-like protein pup is intrinsically disordered
-
Chen X., Solomon W.C., Kang Y., Cerda-Maira F., Darwin K.H., Walters K.J. Prokaryotic ubiquitin-like protein pup is intrinsically disordered. J. Mol. Biol. 2009, 392:208-217.
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 208-217
-
-
Chen, X.1
Solomon, W.C.2
Kang, Y.3
Cerda-Maira, F.4
Darwin, K.H.5
Walters, K.J.6
-
31
-
-
0035170874
-
Solution structure of ThiS and implications for the evolutionary roots of ubiquitin
-
Wang C., Xi J., Begley T.P., Nicholson L.K. Solution structure of ThiS and implications for the evolutionary roots of ubiquitin. Nat. Struct. Biol. 2001, 8:47-51.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 47-51
-
-
Wang, C.1
Xi, J.2
Begley, T.P.3
Nicholson, L.K.4
-
32
-
-
78249260025
-
Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis
-
Archaea
-
K.S. Makarova, E.V. Koonin, Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis, Archaea 2010.
-
(2010)
-
-
Makarova, K.S.1
Koonin, E.V.2
-
33
-
-
14644414892
-
Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target
-
Valafar H., Mayer K.L., Bougault C.M., LeBlond P.D., Jenney F.E., Brereton P.S., Adams M.W., Prestegard J.H. Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target. J. Struct. Func. Genom. 2004, 5:241-254.
-
(2004)
J. Struct. Func. Genom.
, vol.5
, pp. 241-254
-
-
Valafar, H.1
Mayer, K.L.2
Bougault, C.M.3
LeBlond, P.D.4
Jenney, F.E.5
Brereton, P.S.6
Adams, M.W.7
Prestegard, J.H.8
-
34
-
-
44649101850
-
Atypical ubiquitin chains: new molecular signals. 'Protein modifications: beyond the usual suspects' review series
-
Ikeda F., Dikic I. Atypical ubiquitin chains: new molecular signals. 'Protein modifications: beyond the usual suspects' review series. EMBO Rep. 2008, 9:536-542.
-
(2008)
EMBO Rep.
, vol.9
, pp. 536-542
-
-
Ikeda, F.1
Dikic, I.2
-
35
-
-
20144373683
-
Lys6-modified ubiquitin inhibits ubiquitin-dependent protein degradation
-
Shang F., Deng G., Liu Q., Guo W., Haas A.L., Crosas B., Finley D., Taylor A. Lys6-modified ubiquitin inhibits ubiquitin-dependent protein degradation. J. Biol. Chem. 2005, 280:20365-20374.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 20365-20374
-
-
Shang, F.1
Deng, G.2
Liu, Q.3
Guo, W.4
Haas, A.L.5
Crosas, B.6
Finley, D.7
Taylor, A.8
-
36
-
-
33744950091
-
Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation
-
Cripps D., Thomas S.N., Jeng Y., Yang F., Davies P., Yang A.J. Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation. J. Biol. Chem. 2006, 281:10825-10838.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 10825-10838
-
-
Cripps, D.1
Thomas, S.N.2
Jeng, Y.3
Yang, F.4
Davies, P.5
Yang, A.J.6
-
37
-
-
1042278177
-
Mass spectrometric and mutational analyses reveal Lys-6-linked polyubiquitin chains catalyzed by BRCA1-BARD1 ubiquitin ligase
-
Nishikawa H., Ooka S., Sato K., Arima K., Okamoto J., Klevit R.E., Fukuda M., Ohta T. Mass spectrometric and mutational analyses reveal Lys-6-linked polyubiquitin chains catalyzed by BRCA1-BARD1 ubiquitin ligase. J. Biol. Chem. 2004, 279:3916-3924.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 3916-3924
-
-
Nishikawa, H.1
Ooka, S.2
Sato, K.3
Arima, K.4
Okamoto, J.5
Klevit, R.E.6
Fukuda, M.7
Ohta, T.8
-
40
-
-
79251595632
-
Weber-Ban Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins
-
Ranjan F.F., Damberger M., Sutter F.H., Allain E., Weber-Ban Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins. J. Mol. Biol. 2011, 405:1040-1055.
-
(2011)
J. Mol. Biol.
, vol.405
, pp. 1040-1055
-
-
Ranjan, F.F.1
Damberger, M.2
Sutter, F.H.3
Allain, E.4
|