메뉴 건너뛰기




Volumn 153, Issue 9, 2007, Pages 3009-3022

Transcriptional linkage of Haloferax volcanii proteasomal genes with non-proteasomal gene neighbours including RNase P, MOSC domain and SAM-methyltransferase homologues

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; METHYLTRANSFERASE; MOLYBDENUM COFACTOR SULFURASE C TERMINAL PROTEIN; NUCLEOTIDASE; PROTEASOME; PROTEASOME ACTIVATING NUCLEOTIDASE A; PROTEASOME ACTIVATING NUCLEOTIDASE B; PROTEIN POP5; RIBONUCLEASE P; S ADENOSYLMETHIONINE; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 34948861713     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2007/008177-0     Document Type: Article
Times cited : (7)

References (29)
  • 2
    • 0037154431 scopus 로고    scopus 로고
    • MOSC domains: Ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including molybdenum cofactor sulfurases
    • Anantharaman, V. & Aravind, L. (2002). MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including molybdenum cofactor sulfurases. FEMS Microbiol Lett 207, 55-61.
    • (2002) FEMS Microbiol Lett , vol.207 , pp. 55-61
    • Anantharaman, V.1    Aravind, L.2
  • 3
    • 34948822724 scopus 로고    scopus 로고
    • Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Smith, J. A., Seidman, J. G. & Struhl, K. (1987). Preparation and analysis of RNA. In Current Protocols in Molecular Biology, pp. 4.0.1-4.10.11. New York: Green Publishing Associates and Wiley-Interscience.
    • Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Smith, J. A., Seidman, J. G. & Struhl, K. (1987). Preparation and analysis of RNA. In Current Protocols in Molecular Biology, pp. 4.0.1-4.10.11. New York: Green Publishing Associates and Wiley-Interscience.
  • 4
    • 0034077514 scopus 로고    scopus 로고
    • Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?
    • Baliga, N. S., Goo, Y. A., Ng, W. V., Hood, L., Daniels, C. J. & DasSarma, S. (2000). Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? Mol Microbiol 36, 1184-1185.
    • (2000) Mol Microbiol , vol.36 , pp. 1184-1185
    • Baliga, N.S.1    Goo, Y.A.2    Ng, W.V.3    Hood, L.4    Daniels, C.J.5    DasSarma, S.6
  • 5
    • 0035067057 scopus 로고    scopus 로고
    • Mechanism and regulation of transcription in archaea
    • Bell, S. D. & Jackson, S. P. (2001). Mechanism and regulation of transcription in archaea. Curr Opin Microbiol 4, 208-213.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 208-213
    • Bell, S.D.1    Jackson, S.P.2
  • 6
    • 0033769733 scopus 로고    scopus 로고
    • PAN, the proteasome-activating nucleotidase from archaebacteria, is a protein-unfolding molecular chaperone
    • Benaroudj, N. & Goldberg, A. L. (2000). PAN, the proteasome-activating nucleotidase from archaebacteria, is a protein-unfolding molecular chaperone. Nat Cell Biol 2, 833-839.
    • (2000) Nat Cell Biol , vol.2 , pp. 833-839
    • Benaroudj, N.1    Goldberg, A.L.2
  • 7
    • 0029879480 scopus 로고    scopus 로고
    • Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection
    • Danner, S. & Soppa, J. (1996). Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection. Mol Microbiol 19, 1265-1276.
    • (1996) Mol Microbiol , vol.19 , pp. 1265-1276
    • Danner, S.1    Soppa, J.2
  • 9
    • 0642377468 scopus 로고    scopus 로고
    • Genes within genes within bacteria
    • Ellis, J. C. & Brown, J. W. (2003). Genes within genes within bacteria. Trends Biochem Sci 28, 521-523.
    • (2003) Trends Biochem Sci , vol.28 , pp. 521-523
    • Ellis, J.C.1    Brown, J.W.2
  • 10
    • 34248399625 scopus 로고    scopus 로고
    • Facciotti, M. T., Reiss, D. J., Pan, M., Kaur, A., Vuthoori, M., Bonneau, R., Shannon, P., Srivastava, A., Donohoe, S. M. & other authors (2007). General transcription factor specified global gene regulation in archaea. Proc Natl Acad Sci U S A 104, 4630-4635.
    • Facciotti, M. T., Reiss, D. J., Pan, M., Kaur, A., Vuthoori, M., Bonneau, R., Shannon, P., Srivastava, A., Donohoe, S. M. & other authors (2007). General transcription factor specified global gene regulation in archaea. Proc Natl Acad Sci U S A 104, 4630-4635.
  • 11
    • 27744463780 scopus 로고    scopus 로고
    • CBS domains: Structure, function, and pathology in human proteins
    • Ignoul, S. & Eggermont, J. (2005). CBS domains: structure, function, and pathology in human proteins. Am J Physiol Cell Physiol 289, C1369-C1378.
    • (2005) Am J Physiol Cell Physiol , vol.289
    • Ignoul, S.1    Eggermont, J.2
  • 12
    • 0024398664 scopus 로고
    • Sequence of the D-aspartyl/L-isoaspartyl protein methyltransferase from human erythrocytes. Common sequence motifs for protein, DNA, RNA, and small molecule S-adenosylmethionine-dependent methyltransferases
    • Ingrosso, D., Fowler, A. V., Bleibaum, J. & Clarke, S. (1989). Sequence of the D-aspartyl/L-isoaspartyl protein methyltransferase from human erythrocytes. Common sequence motifs for protein, DNA, RNA, and small molecule S-adenosylmethionine-dependent methyltransferases. J Biol Chem 264, 20131-20139.
    • (1989) J Biol Chem , vol.264 , pp. 20131-20139
    • Ingrosso, D.1    Fowler, A.V.2    Bleibaum, J.3    Clarke, S.4
  • 13
    • 0037214430 scopus 로고    scopus 로고
    • Subunit topology of two 20S proteasomes from Haloferax volcanii
    • Kaczowka, S. J. & Maupin-Furlow, J. A. (2003). Subunit topology of two 20S proteasomes from Haloferax volcanii. J Bacteriol 185, 165-174.
    • (2003) J Bacteriol , vol.185 , pp. 165-174
    • Kaczowka, S.J.1    Maupin-Furlow, J.A.2
  • 14
    • 0034745504 scopus 로고    scopus 로고
    • Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
    • Koonin, E. V., Wolf, Y. I. & Aravind, L. (2001). Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res 11, 240-252.
    • (2001) Genome Res , vol.11 , pp. 240-252
    • Koonin, E.V.1    Wolf, Y.I.2    Aravind, L.3
  • 15
    • 0345255620 scopus 로고    scopus 로고
    • A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs
    • Li, Y. & Altman, S. (2003). A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs. Proc Natl Acad Sci U S A 100, 13213-13218.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 13213-13218
    • Li, Y.1    Altman, S.2
  • 16
    • 0028810102 scopus 로고
    • A proteasome from the methanogenic archaeon Methanosarcina thermophila
    • Maupin-Furlow, J. A. & Ferry, J. G. (1995). A proteasome from the methanogenic archaeon Methanosarcina thermophila. J Biol Chem 270, 28617-28622.
    • (1995) J Biol Chem , vol.270 , pp. 28617-28622
    • Maupin-Furlow, J.A.1    Ferry, J.G.2
  • 19
    • 34250398425 scopus 로고
    • Halobacterium volcanii spec. nov., a Dead Sea Halobacterium with a moderate salt requirement
    • Mullakhanbhai, M. F. & Larsen, H. (1975). Halobacterium volcanii spec. nov., a Dead Sea Halobacterium with a moderate salt requirement. Arch Microbiol 104, 207-214.
    • (1975) Arch Microbiol , vol.104 , pp. 207-214
    • Mullakhanbhai, M.F.1    Larsen, H.2
  • 20
    • 0013694657 scopus 로고
    • Isolation of genomic and plasmid DNAs from Halobacterium halobium
    • New York: Cold Spring Harbor Laboratory Press
    • Ng, W.-L., Yang, C.-F., Halladay, J. T., Arora, P. & DasSarma, S. (1995). Isolation of genomic and plasmid DNAs from Halobacterium halobium. In Archaea: a Laboratory Manual, pp. 179-184. New York: Cold Spring Harbor Laboratory Press.
    • (1995) Archaea: A Laboratory Manual , pp. 179-184
    • Ng, W.-L.1    Yang, C.-F.2    Halladay, J.T.3    Arora, P.4    DasSarma, S.5
  • 21
    • 0001882075 scopus 로고
    • A rapid procedure for the isolation of RNA from Haloferax volcanii
    • Plainview, NY: Cold Spring Harbor Laboratory Press
    • Nieuwlandt D. T., Palmer, J. R., Armbruster, D. W., Kuo, Y. P., Oda, W. & Daniels, C. J. (1995). A rapid procedure for the isolation of RNA from Haloferax volcanii. In Archaea: a Laboratory Manual, pp. 161-162. Plainview, NY: Cold Spring Harbor Laboratory Press.
    • (1995) Archaea: A Laboratory Manual , pp. 161-162
    • Nieuwlandt, D.T.1    Palmer, J.R.2    Armbruster, D.W.3    Kuo, Y.P.4    Oda, W.5    Daniels, C.J.6
  • 22
    • 0028800939 scopus 로고
    • Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate
    • Piersen, C. E., Prince, M. A., Augustine, M. L., Dodson, M. L. & Lloyd, R. S. (1995). Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate. J Biol Chem 270, 23475-23484.
    • (1995) J Biol Chem , vol.270 , pp. 23475-23484
    • Piersen, C.E.1    Prince, M.A.2    Augustine, M.L.3    Dodson, M.L.4    Lloyd, R.S.5
  • 23
    • 7744243704 scopus 로고    scopus 로고
    • Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii
    • Reuter, C. J., Kaczowka, S. J. & Maupin-Furlow, J. A. (2004). Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii. J Bacteriol 186, 7763-7772.
    • (2004) J Bacteriol , vol.186 , pp. 7763-7772
    • Reuter, C.J.1    Kaczowka, S.J.2    Maupin-Furlow, J.A.3
  • 24
    • 33749234748 scopus 로고    scopus 로고
    • Proteasomes and their associated ATPases: A destructive combination
    • Smith, D. M., Benaroudj, N. & Goldberg, A. (2006). Proteasomes and their associated ATPases: a destructive combination. J Struct Biol 156, 72-83.
    • (2006) J Struct Biol , vol.156 , pp. 72-83
    • Smith, D.M.1    Benaroudj, N.2    Goldberg, A.3
  • 25
    • 33645083475 scopus 로고    scopus 로고
    • Translation initiation with GUC codon in the archaeon Halobacterium salinarum: Implications for translation of leaderless mRNA and strict correlation between translation initiation and presence of mRNA
    • Srinivasan, G., Krebs, M.P. & RajBhandary, U.L. (2006). Translation initiation with GUC codon in the archaeon Halobacterium salinarum: implications for translation of leaderless mRNA and strict correlation between translation initiation and presence of mRNA. Mol Microbiol 59, 1013-1024.
    • (2006) Mol Microbiol , vol.59 , pp. 1013-1024
    • Srinivasan, G.1    Krebs, M.P.2    RajBhandary, U.L.3
  • 26
    • 0041496232 scopus 로고    scopus 로고
    • Regulation of repair by the 26S proteasome
    • Sweder, K. & Madura, K. (2002). Regulation of repair by the 26S proteasome. J Biomed Biotechnol 2, 94-105.
    • (2002) J Biomed Biotechnol , vol.2 , pp. 94-105
    • Sweder, K.1    Madura, K.2
  • 27
    • 33750831489 scopus 로고    scopus 로고
    • Functional reconstitution and characterization of Pyrococcus furiosus RNase P
    • Tsai, H. Y., Pulukkunat D. K., Woznick W. K. & Gopalan, V. (2006). Functional reconstitution and characterization of Pyrococcus furiosus RNase P. Proc Natl Acad Sci U S A 103, 16147-16152.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 16147-16152
    • Tsai, H.Y.1    Pulukkunat, D.K.2    Woznick, W.K.3    Gopalan, V.4
  • 28
    • 11144263684 scopus 로고    scopus 로고
    • Cellular ubiquitination and proteasomal functions positively modulate mammalian nucleotide excision repair
    • Wang, O. E., Wani, M. A., Chen, J., Zhu, O., Wani, G., El Mahdy, M. A. & Wani, A. A. (2005). Cellular ubiquitination and proteasomal functions positively modulate mammalian nucleotide excision repair. Mol Carcinog 42, 53-64.
    • (2005) Mol Carcinog , vol.42 , pp. 53-64
    • Wang, O.E.1    Wani, M.A.2    Chen, J.3    Zhu, O.4    Wani, G.5    El Mahdy, M.A.6    Wani, A.A.7
  • 29
    • 0032836107 scopus 로고    scopus 로고
    • Halophilic 20S proteasomes of the archaeon Haloferax volcanii: Purification, characterization and gene sequence analysis
    • Wilson, H. L., Aldrich, H. C. & Maupin-Furlow, J. A. (1999). Halophilic 20S proteasomes of the archaeon Haloferax volcanii: purification, characterization and gene sequence analysis. J Bacteriol 181, 5814-5824.
    • (1999) J Bacteriol , vol.181 , pp. 5814-5824
    • Wilson, H.L.1    Aldrich, H.C.2    Maupin-Furlow, J.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.