Evolutionary patterning of hemagglutinin gene sequence of 2009 h1n1 pandemic

Journal of Biomolecular Structure and Dynamics

Volumn 29, Issue 4, 2012, Pages 733-742

  Banerjee, Rachana ^a   Roy, Ayan ^b   Ahmad, Fayaz ^c   Das, Santasabuj ^d   Basak, Surajit ^d  

^a UNIVERSITY OF CALCUTTA   (India)

^b SRM UNIVERSITY   (India)

^c NATIONAL INSTITUTE OF TECHNOLOGY CALICUT   (India)

^d TRIPURA UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

HEMAGGLUTININ; INFLUENZA VIRUS HEMAGGLUTININ; SIALIC ACID;

AMINO ACID SEQUENCE; CHEMISTRY; EVOLUTION; GENETICS; HUMAN; INFLUENZA; INFLUENZA A VIRUS (H1N1); MOLECULAR GENETICS; 2009 H1N1 INFLUENZA; AMINO ACID ANALYSIS; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; EVOLUTIONARY RATE; GENE CLUSTER; GENE SEQUENCE; GENETIC STABILITY; GENETIC VARIABILITY; HEMAGGLUTININ GENE; INFLUENZA VIRUS A H1N1; MOLECULAR EVOLUTION; MOLECULAR INTERACTION; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; RESIDUE ANALYSIS; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; VIRUS GENE; VIRUS TRANSMISSION; VIRUS VIRULENCE;

AMINO ACID SEQUENCE; BIOLOGICAL EVOLUTION; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HEMAGGLUTININS; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; MOLECULAR SEQUENCE DATA;

ORTHOMYXOVIRIDAE; SUIDAE;

EID: 84855181551     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2012.10507411     Document Type: Article

References (58)

1. Reid, A. H., Fanning, T. G., Hultin, J. V., and Taubenbeger, J. K., 1999. Proc Natl Acad Sci USA, 96:1651–1656.
2. Ha, Y., Stevens, D. J., Skehel, J. J., and Wiley, D. C., 2002. EMBO J, 21:865–875.
3. Skehel, J. J., and Wiley, D. C., 2000. Annu Rev Biochem, 69:531–569.
4. Neumann, G., Noda, T., and Kawaoka, Y., 2009. Nature, 459:931–939.
5. Shen, J., Ma, J., and Wang, Q., 2009. PLoS One, 4:e7789
6. Reid, A. H., and et al. 2003. Emerg Infect Dis, 9:1249–1253.
7. Logon, W. P., and Mac, K. D., 1951. Lancet, 1:264–265.
8. Collins, S. D., and Lehmann, J., 1951. Public Health Rep, 66:1487–1516.
9. Salk, J. E., and Suriano, P. C., 1949. Am J Public Health Nations Health, 39:345–355.
10. Killbourne, E. D., and et al. 2002. Proc Natl Acad Sci USA, 99:10748–10752.
11. Viboud, C., Tam, T., Fleming, D., and et al. 2006. Vaccine, 24:6701–6707.
12. Viboud, C., Tam, T., Fleming, D., Miller, M. A., and Simonsen, L., 2006. Emerg Infect Dis, 12:661–668.
13. Krause, J. C., and et al. 2010. J Virol, 84:3127–3130.
14. Wang, T. T., and Palese, P., 2009. Cell, 137:983–985.
15. Neumann, G., Noda, T., and Kawaoka, Y., 2009. Nature, 459:931–939.
16. Peiris, J. S., Poon, L. L., and Guan, Y., 2009. J Clin Virol, 45:169–173.
17. Dawood, F. S., and et al. 2009. N Engl J Med, 360:2605–2615.
18. Fraser, C., and et al. 2009. Science, 324:1557–1561.
19. Wei, C. J., and et al. 2010. Sci Transl Med, 2:24r a21
20. Reid, A. H., Taubenberger, J. K., and Fanning, T. G., 2004. Nat Rev Microbiol, 2:909–914.
21. Taubenberger, J. K., Reid, A. H., Krafft, A., and et al. 1997. Science, 275:1793–1796.
22. Taubenberger, J. K., Reid, A. H., Lourens, R. M., and et al. 2005. Nature, 437:889–893.
23. Smith, G. J. D., Bahl, J., Vijaykrishna, D., and et al. 2009. Proc Nat Acad Sci (USA), 106:11709–11712.
24. Garten, R. J., Davis, C. T., Russell, C. A., and et al. 2009. Science, 325:197–201.
25. Reid, A. H., Janczewski, T. A., Lourens, R. M., Elliot, A. J., Daniels, R. S., and et al. 2003. Emerg Infect Dis, 9:1249–1253.
26. Tumpey, T. M., Maines, T. R., Van Hoeven, N., Glaser, L., Solorzano, A., and et al. 2007. Science, 315:655–659.
27. Srinivasan, A., Viswanathan, K., Raman, R., Chandrasekaran, A., Raguram, S., and et al. 2008. Proc Natl Acad Sci U S A, 105:2800–2805.
28. Stevens, J., Blixt, O., Glaser, L., Taubenberger, J. K., Palese, P., and et al. 2006. J Mol Biol, 355:1143–1155.
29. Padlan, E. A., 2010. Med Hypotheses, 74:240–241.
30. Bush, R. M., Fitch, W. M., Bender, C. A., and Cox, N. J., 1999. Mol Biol Evol, 16:1457–1465.
31. Chen, C. Y., Chang, Y. H., Bau, D. T., Huang, H. J., Tsai, F. J., Tsai, C. H., and Chen, C. Y., 2009. J Biomol Struct Dyn, 27:171–178.
32. Lin, C. H., Chang, T. T., Sun, M. F., Chen, H. Y., Tsai, F. J., Chang, K. L., Fisher, M., and Chen, C. Y., 2011. J Biomol Struct Dyn, 28:471–482.
33. Chang, T. T., Sun, M. F., Chen, H. Y., Tsai, F. J., Fisher, M., Lin, J. G., and Chen, C. Y., 2011. J Biomol Struct Dyn, 28:773–786.
34. Greenacre, M. J., 1984. London:Academic Press.
35. Sabbía, V., Piovani, R., Naya, H., Rodríguez-Maseda, H., Romero, H., and Musto, H., 2007. J Biomol Struct Dyn, 25:55–59.
36. Basak, S., Banerjee, T., Gupta, S. K., and Ghosh, T. C., 2004. J Biomol Struct Dyn, 22:205–214.
37. Banerjee, T., Basak, S., Gupta, S. K., and Ghosh, T. C., 2004. J Biomol Struct Dyn, 22:13–23.
38. Basak, S., and Ghosh, T. C., 2006. FEBS Lett, 580:3895–3899.
39. Prilusky, J., Felder, C. E., Zeev-Ben-Mordehai, T., Rydberg, E. H., Man, O., Beckmann, J. S., Silman, I., and Sussman, J. L., 2005. Bioinformatics, 21:3435–3438.
40. Liang, H., Zhou, W., and Landweber, L. F., 2006. Nucleic Acids Res, 34 (Web Server issue):W382–W384.
41. Gray, G. C., and et al. 2007. Emerging Infectious Diseases, 13:1871–1878.
42. Zimmer, S. M., and Burke, D. S., 2009. N Engl J Med, 361:279–285.
43. Newman, A. P., and et al. 2008. Emerging Infectious Diseases, 14:1470–1472.
44. Shinde, M., and et al. 2009. N Engl J Med, 360:2616–2625.
45. Quinlisk, P., 2009. Emerging Issue:Novel Influenza A (H1N1). In this presentation, Dr. Patricia Quinlisk, State Epidemiologist and Medical Director, Iowa Department of Public Health. discusses the outbreak of influenza A (H1N1) of swine origin. (http://www.public-health.uiowa.edu/icphp/grand_rounds/archive/2009/pdf/050609-Quinlisk.pdf)
46. Vincent, A. L., and et al. 2009. Veterinary Microbiology, 137:51–59.
47. Goh, G. K. M., Dunker, A. K., and Uversky, V. N., 2009. Virology Journal% Vol. 6, 69
48. Brown, C. J., and et al. 2002. J Mol Evol, 55:104–110.
49. Vonderviszt, F., Kanto, S., Aizawa, S., and Namba, K., 1989. J Mol Biol, 209:127–133.
50. Wang, M., Zhang, X., Zhao, H., Wang, Q., and Pan, Y., 2010. Genetica, 138:587–599.
51. Hughes, A. L., and Nei, M., 1988. Nature, 335:167–170.
52. Thomas, M. A., and et al. 2003. Mol Biol Evol, 20:964–968.
53. Vonderviszt, F., Kanto, S., Aizawa, S., and Namba, K., 1989. J Mol Biol, 209:127–133.
54. Wang, M., Zhang, X., Zhao, H., Wang, Q., and Pan, Y., 2010. Genetica, 138:587–599.
55. Hughes, A. L., and Nei, M., 1988. Nature, 335:167–170.
56. Sinha, N. K., Roy, A., Das, B., Das, S., and Basak, S., 2009. Biochem Biophys Res Commun, 390:349–351.
57. Viswanathan, K., Chandrasekaran, A., Srinivasan, A., Raman, R., Sasisekharan, V., and Sasisekharan, R., 2010. Glycoconj J, 27:561–570.
58. Hensley, S. E., and et al. 2009. Science, 326:734–736.