Screening from the world's largest tcm database against h1n1 virus

Journal of Biomolecular Structure and Dynamics

Volumn 28, Issue 5, 2011, Pages 773-786

  Chang, Tung Ti ^a,b   Sun, Mao Feng ^a,b   Chen, Hsin Yi ^c   Tsai, Fuu Jen ^b   Fisher, Mark ^d   Lin, Jaung Geng ^a   Chen, Calvin Yu Chian ^a,c,d,e  

^a CHINA MEDICAL UNIVERSITY   (Taiwan)

^b CHINA MEDICAL UNIVERSITY HOSPITAL   (Taiwan)

^c ASIA UNIVERSITY   (Taiwan)

^d HARVARD MIT DIVISION OF HEALTH SCIENCES AND TECHNOLOGY   (United States)

^e Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

H1N1; Hemagglutinin; Molecular dynamics; Swine influenza virus; Tamiflu; Traditional Chinese medicine (TCM)

Indexed keywords

3 O FERULOYLQUINIC ACID; AMENTOFLAVONE; ANTIVIRUS AGENT; CHINESE DRUG; CHOLIC ACID; CYNARINE; DIGALLIC ACID; ERGOTAMINE; EUGENIIN; GALLOYL OXYPAEONIFLORIN; GLUTINIC ACID; GLYCYRRHIZIC ACID; HELIOTRINE; PICROCROCINIC ACID; PROCYANIDIN C1; ROSMARICINE; ROSMARICINE 14; ROSMARICINE 15; ROSMARINIC ACID; RUTOSIDE; SCHAFTOSIDE; SONGBEISINE; TANGSHENOSIDE I; UNCLASSIFIED DRUG; XYLOPINE 2;

ARTICLE; BINDING SITE; CHINESE MEDICINE; DATA BASE; DRUG SCREENING; DRUG STRUCTURE; INFLUENZA VIRUS A H1N1; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ORTHOMYXOVIRIDAE; SWINE INFLUENZA VIRUS;

EID: 79952209193     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2011.10508605     Document Type: Article

References (73)

1. Skehel, J. J., and Wiley, D. C., 2000. Annu Rev Biochem, 69:531–569.
2. Bullough, P. A., Hughson, F. M., Skehel, J. J., and Wiley, D. C., 1994. Nature, 371:37–43.
3. Wen, W. H., Wang, S. Y., Tsai, K. C., Cheng, Y. S., Yang, A. S., Fang, J. M., and Wong, C. H., 2010. Bioorg Med Chem, 18:4074–4084.
4. Moscona, A., 2009. New Engl J Med, 360:953–956.
5. Chen, H., Cheung, C. L., Tai, H., Zhao, P., Chan, J. F., Cheng, V. C., Chan, K. H., and Yuen, K. Y., 2009. Emerg Infect Dis, 15:1970–1972.
6. Lai, S. C., Peng, W. H., Huang, S. C., Ho, Y. L., Huang, T. H., Lai, Z. R., and Chang, Y. S., 2009. Am J Chin Med, 37:573–588.
7. Tsai, C. H., Pan, T. C., Lai, M. T., Lee, S. C., Chen, M. L., Jheng, J. R., and Chen, W. C., 2009. Urol Int, 82:464–471.
8. Chen, P. J., Hsieh, C. L., Su, K. P., Hou, Y. C., Chiang, H. M., and Sheen, L. Y., 2009. Am J Chin Med, 37:1113–1124.
9. Chang, T. T., Huang, H. J., Lee, K. J., Yu, H. W., Chen, H. Y., Tsai, F. J., Sun, M. F., and Chen, C. Y. C., 2010. J Biomol Struct Dyn, 28:309–321.
10. Chen, C. Y. C., 2009. J Biomol Struct Dyn, 27:271–282.
11. Huang, H. J., Lee, K. J., Yu, H. W., Chen, H. Y., Tsai, F. J., and Chen, C. Y., 2010. J Biomol Struct Dyn, 28:187–200.
12. Huang, H. J., Lee, K. J., Yu, H. W., Chen, C. Y., Hsu, C. H., Chen, H. Y., Tsai, F. J., and Chen, C. Y. C., 2010. J Biomol Struct Dyn, 28:23–37.
13. Chen, C. Y., 2010. J Mol Graph Model, 29:21–31.
14. Huang, H. J., Chen, C. Y., Chen, H. Y., Tsai, F. J., and Chen, C. Y. C., 2010. J Taiwan Inst Chem Eng, 41:352–359.
15. Chen, C. Y., 2010. J Biomol Struct Dyn, 27:627–640.
16. Chen, C. Y. C., 2010. J Taiwan Inst Chem Eng, 41:143–149.
17. Chen, C. Y., Huang, H. J., Tsai, F. J., and Chen, C. Y. C., 2010. J Taiwan Inst Chem Eng, 41:8–15.
18. Chen, C. Y. C., 2009. J Mol Graph Model, 28:261–269.
19. Chen, C. Y., Chang, Y. H., Bau, D. T., Huang, H. J., Tsai, F. J., Tsai, C. H., and Chen, C. Y. C., 2009. J Biomol Struct Dyn, 27:171–178.
20. Chen, C. Y. C., 2009. J Taiwan Inst Chem Eng, 40:155–161.
21. Chen, C. Y. C., 2009. J Taiwan Inst Chem Eng, 40:36–47.
22. Chen, C. Y. C., 2008. J Chin Inst Chem Eng, 39:663–671.
23. Chen, C. Y. C., 2008. J Chin Inst Chem Eng, 39:617–624.
24. Chen, C. Y., Chen, Y. F., Tsai, H. Y., and Wu, C. H., 2008. J Biomol Struct Dyn, 26:57–64.
25. Chen, C. Y. C., Chen, G. W., and Chen, W. Y. C., 2008. J Chin Chem Soc, 55:297–302.
26. Chen, Y. C., 2007. J Chin Chem Soc, 54:653–658.
27. Chen, C. Y., Chang, Y. H., Bau, D. T., Huang, H. J., Tsai, F. J., Tsai, C. H., and Chen, C. Y. C., 2009. Acta Pharmacol Sin, 30:1186–1194.
28. Chen, Y. C., and Chen, K. T., 2007. Acta Pharmacol Sin, 28:2027–2032.
29. Banappagari, S., Ronald, S., and Satyanarayanajois, S. D., 2010. J Biomol Struct Dyn, 28:289–308.
30. Bhargavi, K., Chaitanya, P. K., Ramasree, D., Vasavi, M., Murthy, D. K., and Uma, V., 2010. J Biomol Struct Dyn, 28:379–391.
31. Wiesner, J., Kriz, Z., Kuca, K., Jun, D., and Koca, J., 2010. J Biomol Struct Dyn, 28:393–403.
32. Pugalenthi, G., Kandaswamy, K. K., Suganthan, P. N., Sowdhamini, R., Martinetz, T., and Kolatkar, P. R., 2010. J Biomol Struct Dyn, 28:405–414.
33. Carra, C., and Cucinotta, F. A., 2010. J Biomol Struct Dyn, 27:407–427.
34. Roy, S., and Thakur, A. R., 2010. J Biomol Struct Dyn, 27:443–455.
35. Jin, B., Lee, H. M., and Kim, S. K., 2010. J Biomol Struct Dyn, 27:457–464.
36. Vasilescu, D., Adrian-Scotto, M., Fadiel, A., and Hamza, A., 2010. J Biomol Struct Dyn, 27:465–476.
37. Sklenovsky, P., and Otyepka, M., 2010. J Biomol Struct Dyn, 27:521–539.
38. Sharadadevi, A., and Nagaraj, R., 2010. J Biomol Struct Dyn, 27:541–550.
39. Mehrnejad, F., and Zarei, M., 2010. J Biomol Struct Dyn, 27:551–559.
40. Cao, Z., and Wang, J., 2010. J Biomol Struct Dyn, 27:651–661.
41. Sharma, S., Sonavane, U. B., and Joshi, R. R., 2010. J Biomol Struct Dyn, 27:663–676.
42. Borkar, A., Ghosh, I., and Bhattacharyya, D., 2010. J Biomol Struct Dyn, 27:695–712.
43. De Santis, P., Morosetti, S., and Scipioni, A., 2010. J Biomol Struct Dyn, 27:747–764.
44. Aman, M. J., Karauzum, H., Bowden, M. G., and Nguyen, T. L., 2010. J Biomol Struct Dyn, 28:1–12.
45. Koshy, C., Parthiban, M., and Sowdhamini, R., 2010. J Biomol Struct Dyn, 28:71–83.
46. Nekrasov, A. N., and Zinchenko, A. A., 2010. J Biomol Struct Dyn, 28:85–96.
47. Tao, Y., Rao, Z. H., and Liu, S. Q., 2010. J Biomol Struct Dyn, 28:143–157.
48. Zhang, S. L., and Wang, T. M., 2010. J Biomol Struct Dyn, 28:247–258.
49. Lu, Z. R., Seo, E., Yan, L., Yin, S. J., Si, Y. X., Qian, G. Y., Park, Y. D., and Yang, J. M., 2010. J Biomol Struct Dyn, 28:259–276.
50. Ilda, D., Giovanni, C., and Alessandro, D., 2009. J Biomol Struct Dyn, 27:307–317.
51. Zhang, J. P., 2009. J Biomol Struct Dyn, 27:159–162.
52. Andrianov, A. M., and Anishchenko, I. V., 2009. J Biomol Struct Dyn, 27:179–193.
53. Patargias, G., Martay, H., and Fischer, W. B., 2009. J Biomol Struct Dyn, 27:1–12.
54. Akten, E. D., Cansu, S., and Doruker, P., 2009. J Biomol Struct Dyn, 27:13–25.
55. Hage-Melim, L. I., da Silva, C. H., Semighini, E. P., Taft, C. A., and Sampaio, S. V., 2009. J Biomol Struct Dyn, 27:27–35.
56. Parthiban, M., Rajasekaran, M. B., Ramakumar, S., and Shanmughavel, P., 2009. J Biomol Struct Dyn, 26:535–547.
57. Timofeyeva, N. A., Koval, V. V., Knorre, D. G., Zharkov, D. O., Saparbaev, M. K., Ishchenko, A. A., and Fedorova, O. S., 2009. J Biomol Struct Dyn, 26:637–652.
58. Sille, J., and Remko, M., 2009. J Biomol Struct Dyn, 26:431–444.
59. Andrianov, A. M., 2009. J Biomol Struct Dyn, 26:445–454.
60. Mohan, S., Perry, J. J. P., Poulose, N., Nair, B. G., and Anilkumar, G., 2009. J Biomol Struct Dyn, 26:455–464.
61. Subramaniam, S., Mohmmed, A., and Gupta, D., 2009. J Biomol Struct Dyn, 26:473–479.
62. Liu, J., Stevens, D. J., Haire, L. F., Walker, P. A., Coombs, P. J., Russell, R. J., Gamblin, S. J., and Skehel, J. J., 2009. Proc Natl Acad Sci U S A, 106:17175–17180.
63. Thompson, J. D., Higgins, D. G., and Gibson, T. J., 1994. Nucleic Acids Res, 22:4673–4680.
64. Eswar, N., Webb, B., Marti-Renom, M. A., Madhusudhan, M. S., Eramian, D., Shen, M. Y., Pieper, U., and Sali, A., 2007. Curr Protoc Protein Sci Chapter, 2 Unit 2 9
65. Ramachandran, G. N., Ramakrishnan, C., and Sasisekharan, V., 1963. J Mol Biol, 7:95–99.
66. Eisenberg, D., Luthy, R., and Bowie, J. U., 1997. Methods Enzymol, 277:396–404.
67. Venkatachalam, C. M., Jiang, X., Oldfield, T., and Waldman, M., 2003. J Mol Graph Model, 21:289–307.
68. Bohm, H. J., 1992. J Comput Aided Mol Des, 6:61–78.
69. Lipinski, C. A., Lombardo, F., Dominy, B. W., and Feeney, P. J., 2001. Adv Drug Deliv Rev, 46:3–26.
70. Krammer, A., Kirchhoff, P. D., Jiang, X., Venkatachalam, C. M., and Waldman, M., 2005. J Mol Graph Model, 23:395–407.
71. Muegge, I., 2006. J. Med Chem, 49:5895–5902.
72. Montenegro, H., Gutierrez, M., Romero, L. I., Ortega-Barria, E., Capson, T. L., and Rios, L. C., 2003. Planta Med, 69:677–679.
73. Calabrese, V., Scapagnini, G., Catalano, C., Dinotta, F., Geraci, D., and Morganti, P., 2000. Int J Tissue React, 22:5–13.