In silico characterization and comparative genomic analysis of the Culex quinquefasciatus glutathione S-transferase (GST) supergene family

Parasitology Research

Volumn 109, Issue 4, 2011, Pages 1165-1177

  Niranjan Reddy, B P ^a,b   Prasad, G B K S ^b   Raghavendra, K ^a  

^a NATIONAL INSTITUTE OF MALARIA RESEARCH   (India)

^b JIWAJI UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER MODEL; CONTROLLED STUDY; CULEX QUINQUEFASCIATUS; CYTOSOL; EXON; GENE; GENE CLUSTER; GENE DUPLICATION; GENE LOCATION; GENE LOSS; GENE SEQUENCE; GENETIC MARKER; GENETIC ORGANIZATION; GENOME ANALYSIS; GLUTATHIONE S TRANSFERASE GENE; INSECT GENETICS; INTRON; MICROSOME; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; CULEX; DATABASES, GENETIC; EVOLUTION, MOLECULAR; EXONS; GENE DUPLICATION; GENOME, INSECT; GENOMICS; GLUTATHIONE TRANSFERASE; INSECT PROTEINS; INSECTICIDE RESISTANCE; INTRONS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; SEQUENCE ALIGNMENT; SOFTWARE;

CULEX PIPIENS QUINQUEFASCIATUS; HEXAPODA;

EID: 83155181742     PISSN: 09320113     EISSN: 14321955     Source Type: Journal    
DOI: 10.1007/s00436-011-2364-x     Document Type: Article

References (68)

1. Agianian B, Tucker PA, Schouten A, Leonard K, Bullard B, Gros P (2003) Structure of a Drosophila sigma class glutathione Stransferase reveals a novel active site topography suited for lipid peroxidation products. J Mol Biol 326:151-165 (Pubitemid 36279365)
2. Arensburger P,Megy K,Waterhouse R, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell C, Campbell KS, Casola C, Castro M, Chandramouliswaran I, Chapman S, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett CM, Guigo R, Haas B, Hammond M, Hansson B, Hemingway J, Hill S, Howarth C, Ignell R, Kennedy RC, Kodira C, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira HF, Nene V, Nguyen N, Pearson M, Pritham E, Puiu D, Qi Y, Ranson H, Ribeiro J, Roberston H, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JMC, UngerMF, Vanlandingham D, Vilella AJ,White O,White J,Wondji C, Wortman JR, Zdobnov E, Birren B, Christensen B, Collins FH, Cornel AJ, Dimopoulos G,Hannick L, Higgs S, Lanzaro G, Lawson D, LeeN,MuskavitchM, Raikhel A, Atkinson P (2010) Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science 330:86-88
3. Betts MJ, Guigo R, Agarwal P, Russell RB (2001) Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution? EMBO J 20:5354-5360 (Pubitemid 32959455)
4. Blackburn AC, Woollatt E, Sutherland GR, Board PG (1998) Characterization and chromosome location of the gene GSTZ1 encoding the human Zeta class glutathione transferase and maleylacetoacetate isomerase. Cytogenet Cell Genet 83:109-114 (Pubitemid 29062707)
5. Board PG, Baker RT, Chelvanayagam G, Jermiin LS (1997) Zeta, a novel class of glutathione transferases in a range of species from plants to humans. Biochem J 328:929-935 (Pubitemid 28005795)
6. Boudet N, Aubourg S, Toffano-Nioche C, Kreis M, Lecharny A (2001) Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila. Genome Res 11:2101-2114 (Pubitemid 33138808)
7. Castillo-Davis CI, Mekhedov SL, Hartl DL, Koonin EV, Kondrashov FA (2002) Selection for short introns in highly expressed genes. Nat Genet 31:415-418 (Pubitemid 35154453)
8. Charif D, Thioulouse J, Lobry JR, Perrière G (2005) Online synonymous codon usage analyses with the ade4 and seqinR packages. Bioinformatics 21:545-547 (Pubitemid 40310244)
9. Chelvanayagam G, Parker MW, Board PG (2001) Fly fishing for GSTs: a unified nomenclature for mammalian and insect glutathione transferases. Chem Biol Interact 133:256-260 (Pubitemid 33591397)
10. Che-Mendoza A, Penilla RP, Rodriguez DA (2009) Insecticide resistance and glutathione S-transferases in mosquitoes: a review. Afr J Biotechnol 8:1386-1397
11. Cho S, Jin SW, Cohen A, Ellis RE (2004) A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode evolution. Genome Res 14:1207-1220 (Pubitemid 39029218)
12. Claudianos C, Ranson H, Johnson RM, Biswas S, Schuler MA, Berenbaum MR, Feyereisen R, Oakeshott JG (2006) A deficit of detoxification enzymes: pesticide sensitivity and environmental response in the honeybee. Insect Mol Biol 15:615-636 (Pubitemid 44652091)
13. Coulombe-Huntington J, Majewski J (2007) Intron loss and gain in Drosophila. Mol Biol Evol 24:2842-2850
14. Csuros M (2005) Likely scenarios of intron evolution. Lect Notes Comput Sci 3678:47
15. DeBry RW, Slade NA (1985) Cladistic analysis of restriction endonuclease cleavage map data within a maximum likelihood framework. Syst Zool 31:21-34
16. Ding Y, Ortelli F, Rossiter LC, Hemingway J, Ranson H (2003) The Anopheles gambiae glutathione transferase supergene family: annotation, phylogeny and expression profiles. BMC Genomics 4:35
17. Ding Y, Hawkes N, Meredith J, Eggleston P, Hemingway J, Ranson H (2005) Characterization of the promoters of Epsilon glutathione transferases in the mosquito Anopheles gambiae and their response to oxidative stress. Biochem J 387:879-888 (Pubitemid 40685725)
18. Dixon DP, Lapthorn A, Edwards R (2002) Plant glutathione transferases. Genome Biol 3(3):Reviews3004
19. Dourado DF, Fernandes PA, Ramos MJ (2008) Mammalian cytosolic glutathione transferases. Curr Protein Pept Sci 9:325-337
20. Enayati AA, Ranson H, Hemingway J (2005) Insect glutathione transferases and insecticide resistance. Insect Mol Biol 14:3-8 (Pubitemid 40218079)
21. Farris JS (1977) Phylogenetic analysis under Dollo's Law. Syst Zool 26:77-88
22. Feyereisen R (2006) Evolution of insect P450. Biochem Soc Trans 34:1252-1255 (Pubitemid 46769032)
23. Gotoh O (1998) Divergent structures of Caenorhabditis elegans cytochrome P450 genes suggest the frequent loss and gain of introns during the evolution of nematodes. Mol Biol Evol 15:1447-1459 (Pubitemid 28511925)
24. Hayes JD, Pulford DJ (1995) The glutathione S-transferase supergene family: regulation of GST and the contribution of the isoenzymes to cancer chemoprotection and drug resistance. Crit Rev Biochem Mol Biol 30:521-600
25. Hemingway J, Field L, Vontas J (2002) An overview of insecticide resistance. Science 298:96-97
26. Hemingway J, Beaty BJ, Rowland M, Scott TW, Sharp BL (2006) The Innovative Vector Control Consortium: improved control of mosquito-borne diseases. Trends Parasitol 22:308-312 (Pubitemid 43946706)
27. Henikoff S, Henikoff JG, Alford WJ, Pietrokovski S (1995) Automated construction and graphical presentation of protein blocks from unaligned sequences. Gene 163:GC17-GC26
28. Huson DH, Steel M (2004) Phylogenetic trees based on gene content. Bioinformatics 20:2044-2049 (Pubitemid 39236556)
29. John HD, Jack FU, Ian JR (2005) Glutathione transferases. Annu Rev Pharmacol Toxicol 45:51-88
30. Kasai S, Komagata O, Okamura T, Tomita Y (2009) Alternative splicing and developmental regulation of glutathione transferases in Culex quinquefasciatus Say. Pestic Biochem Physiol 94:21-29
31. Knudsen AB, Slooff R (1992) Vector-borne disease problems in rapid urbanization: new approaches to vector control. Bull World Health Organ 70:1-6
32. Krauss V, Thummler C, Georgi F, Lehmann J, Stadler PF, Eisenhardt C (2008) Near intron positions are reliable phylogenetic markers: an application to holometabolous insects. Mol Biol Evol 25:821-830
33. Le Quesne WJ (1974) The uniquely evolved character concept and its cladistic application. Syst Zool 23:513-517
34. Lin H, Zhu W, Silva J, Gu X, Buell CR (2006) Intron gain and loss in segmentally duplicated genes in rice. Genome Biol 7:R41
35. Liska DJ (1998) The detoxification enzyme systems. Altern Med Rev 3:187-198 (Pubitemid 128709128)
36. Long M, Thornton K (2001) Gene duplication and evolution. Science 293:1551
37. Long M, Rosenberg C, Gilbert W (1995) Intron phase correlations and the evolution of the intron/exon structure of genes. Proc Natl Acad Sci USA 92:12495-12499 (Pubitemid 26014096)
38. Low WY, Ng HL, Morton CJ, Parker MW, Batterham P, Robin C (2007) Molecular evolution of glutathione S-transferases in the genus Drosophila. Genetics 177:1363
39. Lumjuan N, Stevenson BJ, Prapanthadara L, Somboon P, Brophy PM, Loftus BJ, Severson DW, Ranson H (2007) The Aedes aegypti glutathione transferase family. Insect Biochem Mol Biol 37:1026-1035 (Pubitemid 47333362)
40. Mallet J (1989) The evolution of insecticide resistance: have the insects won? Trends Ecol Evol 4:336-340
41. Mannervik B, Awasthi YC, Board PG, Hayes JD, Di Ilio C, Ketterer B, Listowsky I, Morgenstern R, Muramatsu M, Pearson WR (1992) Nomenclature for human glutathione transferases. Biochem J 282(Pt 1):305-306
42. Morel F, Rauch C, Coles B, Le Ferrec E, Guillouzo A (2002) The human glutathione transferase alpha locus: genomic organization of the gene cluster and functional characterization of the genetic polymorphism in the hGSTA1 promoter. Pharmacogenetics 12:277-286 (Pubitemid 34620655)
43. Muller P, Choua M, Pignatelli P, Etang J, Walker ED, Donnelly MJ, Simard F, Ranson H (2008) Pyrethroid tolerance is associated with elevated expression of antioxidants and agricultural practice in Anopheles arabiensis sampled from an area of cotton fields in Northern Cameroon. Mol Ecol 17:1145-1155 (Pubitemid 351197359)
44. Notredame C, Higgins DG, Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302:205-217
45. Oakeshott JG, Home I, Sutherland TD, Russell RJ (2003) The genomics of insecticide resistance. Genome Biol 4:202
46. Paquette SM, Bak S, Feyereisen R (2000) Intron-exon organization and phylogeny in a large superfamily, the paralogous cytochrome P450 genes of Arabidopsis thaliana. DNA Cell Biol 19:307-317 (Pubitemid 30612528)
47. Pietrokovski S, Henikoff JG, Henikoff S (1996) The Blocks database-a system for protein classification. Nucleic Acids Res 24:197-200 (Pubitemid 26085765)
48. Ranson H, Hemingway J (2005) Glutathione transferases. Compr Mol Insect Sci 635:383-402
49. Ranson H, Claudianos C, Ortelli F, Abgrall C, Hemingway J, Sharakhova MV, Unger MF, Collins FH, Feyereisen R (2002) Evolution of supergene families associated with insecticide resistance. Science 298:179-181
50. Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV (2003) Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr Biol 13:1512-1517 (Pubitemid 37078407)
51. Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV (2005) Analysis of evolution of exon-intron structure of eukaryotic genes. Brief Bioinform 6:118-134 (Pubitemid 40872279)
52. Rokas A, Holland PWH (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459
53. Roy SW, Gilbert W (2005) Resolution of a deep animal divergence by the pattern of intron conservation. Proc Natl Acad Sci USA 102:4403-4408 (Pubitemid 40397124)
54. Roy SW, Penny D (2007) Intron length distributions and gene prediction. Nucleic Acids Res 35(14):4737-4742 (Pubitemid 47250345)
55. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
56. Sakarya O, Kosik KS, Oakley TH (2008) Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony. Bioinformatics 24:606-612 (Pubitemid 351321203)
57. Sanchez D, Ganfornina MD, Gutierrez G, Marin A (2003) Exon-intron structure and evolution of the Lipocalin gene family. Mol Biol Evol 20:775-783 (Pubitemid 36539014)
58. Saxena A, Hanukoglu I, Strautnieks SS, Thompson RJ, Gardiner RM, Hanukoglu A (1998) Gene structure of the human amiloridesensitive epithelial sodium channel beta subunit. Biochem Biophys Res Commun 252:208-213 (Pubitemid 28534652)
59. Sheehan D, Meade G, Foley VM, Dowd CA (2001) Structure, function and evolution of glutathione transferases: implications for classification of non-mammalian members of an ancient enzyme superfamily. Biochem J 360:1-16 (Pubitemid 33081943)
60. Soranzo N, Sari Gorla M, Mizzi L, De Toma G, Frova C (2004) Organisation and structural evolution of the rice glutathione Stransferase gene family. Mol Genet Genomics 271:511-521 (Pubitemid 38916394)
61. Stephen R, Gibbs RA, Weinstock GM, Beeman RW, Lorenzen MD, Lord JC, Oppert BS (2008) The genome of the model beetle and pest Tribolium castaneum. Nature 452:949-955 (Pubitemid 351589612)
62. Tadepally H, Burger G, Aubry M (2008) Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains. BMC Evol Biol 8:176
63. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
64. Thomas JH (2006) Concerted evolution of two novel protein families in Caenorhabditis species. Genetics 172(4):2269-2281
65. Walters KB, Grant P, Johnson DLE (2009) Evolution of the GST omega gene family in 12 Drosophila species. J Hered 100:742-753
66. Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591 (Pubitemid 47236688)
67. Zaim M, Guillet P (2002) Alternative insecticides: an urgent need. Trends Parasitol 18:161-163 (Pubitemid 34606843)
68. Zheng J, Rogozin IB, Koonin EV, Przytycka TM (2007) Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation. Mol Biol Evol 24:2583-2592 (Pubitemid 350060463)