Organisation and structural evolution of the rice glutathione S-transferase gene family

Molecular Genetics and Genomics

Volumn 271, Issue 5, 2004, Pages 511-521

  Soranzo, N ^a,b   Sari Gorla, M ^a   Mizzi, L ^a   De Toma, G ^a   Frova, C ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Evolution; Gene families; Genomic organization; Glutathione S transferases

Indexed keywords

GLUTATHIONE TRANSFERASE;

ARABIDOPSIS; COMPARATIVE GENE MAPPING; GENE DUPLICATION; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC DATABASE; GENETIC ORGANIZATION; GENETIC VARIABILITY; GENOME ANALYSIS; MAIZE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PLANT GENETICS; PRIORITY JOURNAL; REVIEW; RICE; SOYBEAN;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE DUPLICATION; GENE EXPRESSION; GENES, PLANT; GLUTATHIONE TRANSFERASE; MULTIGENE FAMILY; ORYZA SATIVA; PHYLOGENY; SOYBEANS; ZEA MAYS;

ARABIDOPSIS; GLYCINE MAX; ORYZA; ZEA MAYS;

EID: 3142677326     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-004-1006-8     Document Type: Review

References (51)

1. Alfenito MR, Souer E, Godman CD, Buell R, Mol J, Koes R, Walbot V (1998) Functional complementation of anthocyanin sequestration in the vacuole by widely divergent glutathione S-transferases. Plant Cell 10:1135-1149
2. Altschul SF, Lipman DJ (1990) Protein database searches for multiple alignments. Proc Natl Acad Sci USA 87:5509-5513
3. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208-219
4. Bartling D, Radzio R, Steiner U, Weiler EW (1993) A glutathione S-transferase with glutathione-peroxidase activity from Arabidopsis thaliana. Eur J Biochem 216:579-586
5. Bilang J, Sturm A (1995) Cloning and characterization of a glutathione S-transferase that can be photolabeled with 5-azido-indole-3-acetic acid. Plant Physiol 109:253-260
6. Board PG, Baker RT, Chelvanayagam G, Jermiin LS (1997) Zeta, a novel class of glutathione transferases in a large range of species from plants to humans. Biochem J 328:929-935
7. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268:78-94
8. Chen M (2002) An integrated physical and genetic map of the rice genome. IRGSP Meeting Report 2002 (available at http://demeter.bio.bn1.gov/Tsukuba02. html)
9. Cummins I, Cole DJ, Edwards R (1999) A role for glutathione transferases functioning as glutathione peroxidases in resistance to multiple herbicides in black-grass. Plant J 18:285-292
10. Davenport RJ (2001) Syngenta finishes, consortium goes on. Science 291:807a
11. Devos KM, Beales J, Nagamura Y, Sasaki T (1999) Arabidopsis-rice: will colinearity allow prediction across the eudicot-monocot divide? Genome Res 9:825-829
12. Dixon DP, Cummins I, Cole DJ, Edwards R (1998) Glutathione mediated detoxification systems in plants. Curr Opin Plant Biol 1:258-266
13. Dixon DP, Cole DJ, Edwards R (2000) Characterisation of a zeta class glutathione transferase form Arabidopsis thaliana with a putative role in tyrosine catabolism. Arch Biochem Biophys 384:407-412
14. Dixon DP, Lapthorn A, Edwards R (2002) Plant glutathione transferases. Genome Biol 3:3004.1-3004.10
15. Droog F (1997) Plant glutathione S-transferases, a tale of Theta and Tau. J Plant Growth Regul 16:95-107
16. Edwards R, Dixon DP, Walbot V (2000) Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health. Trends Plant Sci 5:193-198
17. Feng Q, et al (2002) Sequence analysis of rice chromosome 4. Nature 420:316-320
18. Fernandez-Cañon JM, Peñalva MA (1998) Characterization of a fungal maleylacetoacetate isomerase gene and identification of its human homologue. J Biol Chem 273:328-337
19. Fuerst EP, Gronwald JW (1986) Induction of rapid mechanism of metolachlor in sorghum (Sorgum bicolor) shoots by CGA-92194 and other antidotes. Weed Sci 34:354-361
20. Goff SA, et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100
21. Harushima Y, et al (1998) A high-density rice linkage map with 2275 markers using a single F2 population. Genetics 148:479-494
22. Hatton PJ, Cummins I, Cole DJ, Edwards R (1999) Glutathione transferases involved in herbicide detoxification in the leaves of Setaria faberi (giant foxtail). Physiol Plantarum 105:9-16
23. Hayes JD, Pulford DJ (1995) The glutathione S-transferase supergene family: regulation of GST and the contribution of the isozymes to cancer chemoprotection and drug resistance. Crit Rev Biochem Mol Biol 30:445-600
24. Henikoff S, Henikoff JG (1994) Protein family classification based on searching a database of blocks. Genomics 19:97-107
25. Kampranis SC, Damianova R, Atallah M, Toby G, Kondi G, Tsichlis PN, Makris AM (2000) A novel plant glutathione S-transferase/peroxidase suppresses Bax lethality in yeast. J Biol Chem 275(38): 29207-29216
26. Loyall L, Uchida K, Brown S, Furuya M, Frohnmeyer H (2000) Glutathione and a UV-light induced glutathione S-transferase are involved in signaling to chalcone synthase in cell cultures. Plant Cell 12:1939-1950
27. Marrs KA (1996) The functions and regulation of plant glutathione S-transferases. Annu Rev Plant Physiol Plant Mol Biol 47:127-158
28. Mayer K, et al (2001) Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana. Genome Res 11:1167-1174
29. McGonigle B, Keeler SJ, Lau S-MC, Koeppe MK, O'Keefe DP (2000) A genomics approach to the comprehensive analysis of the glutathione S-transferase gene family in soybean and maize. Plant Physiol 124:1105-1120
30. Mueller LA, Godman CD, Silady RA, Walbot V (2000) AN9, a petunia glutathione S-transferase required for anthocyanin sequestration, is a flavonoid binding protein. Plant Physiol 123:1561-1570
31. Ohno S (1970) Evolution by gene duplication. Springer-Verlag, Berlin-Heidelberg-New York
32. Ohta T (2000) Evolution of gene families. Gene 259:45-52
33. Pickett CB, Lu AY (1989) Glutathione S-transferases: gene structure, regulation, and biological function. Annu Rev Biochem 58:743-764
34. Rossini L, Jepson I, Greenland A, Sari-Gorla M (1996) Characterisation of GST isoforms in three maize inbred lines exhibiting differential sensitivity to alachlor. Plant Physiol 112:1595-1600
35. Rossini L, Frova C, Pè ME, Mizzi L, Sari Gorla M (1998) Alachlor regulation of maize glutathione S-transferase genes. Pestic Biochem Physiol 60:205-211
36. Saji S, Umehara Y, Antonio BA, Yamane H, Tanoue H, Baba T, Aoki H, Ishige N, Wu J, Koike K, Matsumoto T, Sasaki T (2001) A physical map with yeast artificial chromosome (YAC) clones covering 63% of the 12 rice chromosomes. Genome 44:32-37
37. Sakata K, Nagasaki H, Idonuma A, Waki K, Kise M, Sasaki T (1999) A computer program for prediction of gene domain on rice genome sequence. The 2nd Georgia Tech International Conference on Bioinformatics, Abstracts p 78
38. Sakata K, Nagamura Y, Numa H, Antonio BA, Nagasaki H, Idonuma A, Watanabe W, Shimizu Y, Horiuchi I, Matsumoto T, Sasaki T, Higo K (2002) RiceGAAS: an automated annotation system and database for rice genome sequence. Nucleic Acids Res 30:98-102
39. Salse J, Piegu B, Cooke R, Delseny M (2002) Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing genome sequencing project. Nucleic Acid Res 30:2316-2328
40. Sasaki T, Burr B (2000) International Rice Genome Sequencing Project: the effort to completely sequence the rice genome. Curr Opin Plant Biol 3:138-141
41. Sasaki T, et al (2002) The genome sequence and structure of rice chromosome 1. Nature 420:312-316
42. The Rice Chromosome 10 Sequencing Consortium (2003) In-depth view of structure, activity and evolution of rice chromosome 10. Science 300:1566-1569
43. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
44. Wagner A (2001) Birth and death of duplicated genes in completely sequenced eukaryotes. Trends Genet 17:237-239
45. Wagner U, Edwards R, Dixon DP, Mauch F (2002) Probing the diversity of the Arabidopsis glutathione S-transferase gene family. Plant Mol Biol 49:515-532
46. Ware D, Jaiswal P, Ni J, Pan X, Chang K, Clark K, Taytelman L, Schmidt S, Zhao W, Cartinhour S, McCouch S, Stein L (2002) Gramene: a resource for comparative grass genomics. Nucleic Acid Res 30:103-105
47. Wolfe KH, Gouy M, Yang Y-W, Sharp PM, Li W-H (1989) Date of monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci USA 86:6201-6205
48. Wu J, Cramer CL, Hatzios KK (1999) Characterization of two cDNAs encoding glutathione S-transferases in rice and induction of their transcripts by the herbicide safener fenchlorim. Physiol Plantarum 105:102-108
49. Wu J, et al (2002) A comprehensive rice transcript map containing 6591 EST sites. Plant Cell 14:525-535
50. Yu J, et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92
51. Yuan Q, Hill J, Hsiao J, Moffat K, Ouyang S, Cheng Z, Jiang J, Buell CR (2002) Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication an a large chloroplast DNA insertion. Mol Genet Genomics 267:713-720