-
1
-
-
78650552589
-
Forcing form and function: Biomechanical regulation of tumor evolution
-
doi:10.1016/j.tcb. 2010.08.015
-
Yu, H., Mouw, J. K. & Weaver, V. M. 2010 Forcing form and function: biomechanical regulation of tumor evolution. Trends Cell Biol. 21, 47-56. (doi:10.1016/j.tcb. 2010.08.015)
-
(2010)
Trends Cell Biol
, vol.21
, pp. 47-56
-
-
Yu, H.1
Mouw, J.K.2
Weaver, V.M.3
-
2
-
-
29744458411
-
Mechanisms of mechanotransduction
-
doi:10.1016/j.devcel.2005.12.006
-
Orr, A. W., Helmke, B. P., Blackman, B. R. & Schwartz, M. A. 2006 Mechanisms of mechanotransduction. Dev. Cell 10, 11-20. (doi:10.1016/j.devcel. 2005.12.006)
-
(2006)
Dev. Cell
, vol.10
, pp. 11-20
-
-
Orr, A.W.1
Helmke, B.P.2
Blackman, B.R.3
Schwartz, M.A.4
-
3
-
-
72149113315
-
Combining mechanical and optical approaches to dissect cellular mechanobiology
-
doi:10.1016/j.jbiomech.2009.09.008
-
Sen, S. & Kumar, S. 2010 Combining mechanical and optical approaches to dissect cellular mechanobiology. J. Biomech. 43, 45-54. (doi:10.1016/j. jbiomech.2009.09.008)
-
(2010)
J. Biomech.
, vol.43
, pp. 45-54
-
-
Sen, S.1
Kumar, S.2
-
4
-
-
0028986193
-
NF-κB: A lesson in family values
-
doi:10.1016/0092-8674(95) 90506-5
-
Thanos, D. & Maniatis, T. 1995 NF-κB: a lesson in family values. Cell 80, 529-532. (doi:10.1016/0092-8674(95) 90506-5)
-
(1995)
Cell
, vol.80
, pp. 529-532
-
-
Thanos, D.1
Maniatis, T.2
-
5
-
-
33644914680
-
Molecular mechanisms of the vascular responses to haemodynamic forces
-
doi:10.1111/j.1365-2796. 2006.01624.x
-
Lehoux, S., Castier, Y. & Tedgui, A. 2006 Molecular mechanisms of the vascular responses to haemodynamic forces. J. Intern. Med. 259, 381-392. (doi:10.1111/j.1365-2796. 2006.01624.x)
-
(2006)
J. Intern. Med.
, vol.259
, pp. 381-392
-
-
Lehoux, S.1
Castier, Y.2
Tedgui, A.3
-
6
-
-
34248588469
-
Genetic connections of the actin cytoskeleton and beyond
-
doi:10. 1002/bies.20570
-
Percipalle, P. 2007 Genetic connections of the actin cytoskeleton and beyond. Bioessays 29, 407-411. (doi:10. 1002/bies.20570)
-
(2007)
Bioessays
, vol.29
, pp. 407-411
-
-
Percipalle, P.1
-
7
-
-
4544228141
-
The nuclear envelope lamina network has elasticity and a compressibility limit suggestive of a molecular shock absorber
-
doi:10. 1242/jcs.01357
-
Dahl, K. N., Kahn, S. M., Wilson, K. L. & Discher, D. E. 2004 The nuclear envelope lamina network has elasticity and a compressibility limit suggestive of a molecular shock absorber. J. Cell Sci. 117, 4779-4786. (doi:10. 1242/jcs.01357)
-
(2004)
J. Cell Sci.
, vol.117
, pp. 4779-4786
-
-
Dahl, K.N.1
Kahn, S.M.2
Wilson, K.L.3
Discher, D.E.4
-
8
-
-
34250777112
-
The nuclear envelope and transcriptional control
-
doi:10.1038/nrg2122
-
Akhtar, A. & Gasser, S. M. 2007 The nuclear envelope and transcriptional control. Nat. Rev. Genet. 8, 507-517. (doi:10.1038/nrg2122)
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 507-517
-
-
Akhtar, A.1
Gasser, S.M.2
-
9
-
-
34248391873
-
The nuclear envelope, a key structure in cellular integrity and gene expression
-
doi:10.2174/092986707780598032
-
Verstraeten, V. L., Broers, J. L., Ramaekers, F. C. & Van Steensel, M. A. 2007 The nuclear envelope, a key structure in cellular integrity and gene expression. Curr. Med. Chem. 14, 1231-1248. (doi:10.2174/092986707780598032)
-
(2007)
Curr. Med. Chem.
, vol.14
, pp. 1231-1248
-
-
Verstraeten, V.L.1
Broers, J.L.2
Ramaekers, F.C.3
Van Steensel, M.A.4
-
10
-
-
0141803271
-
Transcription-driven DNA supercoiling and gene expression control
-
doi:10.2741/968
-
Chen, C. C. & Wu, H. Y. 2003 Transcription-driven DNA supercoiling and gene expression control. Front. Biosci. 8, d430-d439. (doi:10.2741/968)
-
(2003)
Front. Biosci.
, vol.8
-
-
Chen, C.C.1
Wu, H.Y.2
-
11
-
-
0028371248
-
Protein tracking-induced supercoiling of DNA: A tool to regulate DNA transactions in vivo?
-
doi:10.1002/bies.950160205
-
Droge, P. 1994 Protein tracking-induced supercoiling of DNA: a tool to regulate DNA transactions in vivo? Bioessays 16, 91-99. (doi:10.1002/bies. 950160205)
-
(1994)
Bioessays
, vol.16
, pp. 91-99
-
-
Droge, P.1
-
12
-
-
38849132828
-
The functional response of upstream DNA to dynamic supercoiling in vivo
-
doi:10.1038/nsmb.1372
-
Kouzine, F., Sanford, S., Elisha-Feil, Z. & Levens, D. 2008 The functional response of upstream DNA to dynamic supercoiling in vivo. Nat. Struct. Mol. Biol. 15, 146-154. (doi:10.1038/nsmb.1372)
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 146-154
-
-
Kouzine, F.1
Sanford, S.2
Elisha-Feil, Z.3
Levens, D.4
-
13
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
doi:10.1126/science.282.5390.902
-
Wang, M. D., Schnitzer, M. J., Yin, H., Landick, R., Gelles, J. & Block, S. M. 1998 Force and velocity measured for single molecules of RNA polymerase. Science 282, 902-907. (doi:10.1126/science.282.5390.902)
-
(1998)
Science
, vol.282
, pp. 902-907
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
-
14
-
-
0037133348
-
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA
-
doi:10.1073/pnas.022638399
-
Brower-Toland, B. D., Smith, C. L., Yeh, R. C., Lis, J. T., Peterson, C. L. & Wang, M. D. 2002 Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc. Natl Acad. Sci. USA 99, 1960-1965. (doi:10.1073/pnas.022638399)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 1960-1965
-
-
Brower-Toland, B.D.1
Smith, C.L.2
Yeh, R.C.3
Lis, J.T.4
Peterson, C.L.5
Wang, M.D.6
-
15
-
-
0030699999
-
Mechanical separation of the complementary strands of DNA
-
doi:10.1073/pnas.94.22.11935
-
Essevaz-Roulet, B., Bockelmann, U. & Heslot, F. 1997 Mechanical separation of the complementary strands of DNA. Proc. Natl Acad. Sci. USA 94, 11 935-11 940. (doi:10.1073/pnas.94.22.11935)
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 11935-11940
-
-
Essevaz-Roulet, B.1
Bockelmann, U.2
Heslot, F.3
-
16
-
-
0030013891
-
Forces on chromosomal DNA during anaphase
-
doi:10.1016/S0006-3495(96)79247-0
-
Jannink, G., Duplantier, B. & Sikorav, J. L. 1996 Forces on chromosomal DNA during anaphase. Biophys. J. 71, 451-465. (doi:10.1016/S0006- 3495(96)79247-0)
-
(1996)
Biophys. J.
, vol.71
, pp. 451-465
-
-
Jannink, G.1
Duplantier, B.2
Sikorav, J.L.3
-
17
-
-
0034047840
-
Ten commandments: Lessons from the enzymology of DNA replication
-
doi:10.1128/JB.182.13.3613-3618.2000
-
Kornberg, A. 2000 Ten commandments: lessons from the enzymology of DNA replication. J. Bacteriol. 182, 3613-3618. (doi:10.1128/JB.182.13.3613-3618. 2000)
-
(2000)
J. Bacteriol.
, vol.182
, pp. 3613-3618
-
-
Kornberg, A.1
-
18
-
-
0041822089
-
Cell biology: Join the crowd
-
doi:10.1038/425027a
-
Ellis, R. J. & Minton, A. P. 2003 Cell biology: join the crowd. Nature 425, 27-28. (doi:10.1038/425027a)
-
(2003)
Nature
, vol.425
, pp. 27-28
-
-
Ellis, R.J.1
Minton, A.P.2
-
19
-
-
77956301271
-
Active gels as a description of the actin-myosin cytoskeleton
-
doi:10.2976/1.3054712
-
Joanny, J. F. & Prost, J. 2009 Active gels as a description of the actin-myosin cytoskeleton. HFSP J. 3, 94-104. (doi:10.2976/1.3054712)
-
(2009)
HFSP J.
, vol.3
, pp. 94-104
-
-
Joanny, J.F.1
Prost, J.2
-
20
-
-
69249100076
-
Power spectrum of out-of-equilibrium forces in living cells: Amplitude and frequency dependence
-
doi:10.1039/b901311c
-
Gallet, F., Arcizet, D., Bohec, P. & Richert, A. 2009 Power spectrum of out-of-equilibrium forces in living cells: amplitude and frequency dependence. Soft Matter 5, 2947-2953. (doi:10.1039/b901311c)
-
(2009)
Soft Matter
, vol.5
, pp. 2947-2953
-
-
Gallet, F.1
Arcizet, D.2
Bohec, P.3
Richert, A.4
-
21
-
-
0034100040
-
Half a century of 'the nuclear matrix'
-
Pederson, T. 2000 Half a century of 'the nuclear matrix'. Mol. Biol. Cell 11, 799-805.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 799-805
-
-
Pederson, T.1
-
22
-
-
32644449429
-
Nuclear actin: To polymerize or not to polymerize
-
doi:10.1083/jcb.200601095
-
Hofmann, W. A. & De Lanerolle, P. 2006 Nuclear actin: to polymerize or not to polymerize. J. Cell Biol. 172, 495-496. (doi:10.1083/jcb.200601095)
-
(2006)
J. Cell Biol.
, vol.172
, pp. 495-496
-
-
Hofmann, W.A.1
De Lanerolle, P.2
-
23
-
-
32644451623
-
Nucleoplasmic β-actin exists in a dynamic equilibrium between low-mobility polymeric species and rapidly diffusing populations
-
doi:10.1083/jcb.200507101
-
Mcdonald, D., Carrero, G., Andrin, C., De Vries, G. & Hendzel, M. J. 2006 Nucleoplasmic β-actin exists in a dynamic equilibrium between low-mobility polymeric species and rapidly diffusing populations. J. Cell Biol. 172, 541-552. (doi:10.1083/jcb.200507101)
-
(2006)
J. Cell Biol.
, vol.172
, pp. 541-552
-
-
Mcdonald, D.1
Carrero, G.2
Andrin, C.3
De Vries, G.4
Hendzel, M.J.5
-
24
-
-
44449142302
-
Nuclear actin dynamics-from form to function
-
doi:10. 1016/j.febslet.2008.04.010
-
Vartiainen, M. K. 2008 Nuclear actin dynamics-from form to function. FEBS Lett. 582, 2033-2040. (doi:10. 1016/j.febslet.2008.04.010)
-
(2008)
FEBS Lett.
, vol.582
, pp. 2033-2040
-
-
Vartiainen, M.K.1
-
25
-
-
0030836598
-
Evidence for the presence of myosin I in the nucleus
-
doi:10.1074/jbc.272. 27.17176
-
Nowak, G., Pestic-Dragovich, L., Hozak, P., Philimonenko, A., Simerly, C., Schatten, G. & De Lanerolle, P. 1997 Evidence for the presence of myosin I in the nucleus. J. Biol. Chem. 272, 17176-17181. (doi:10.1074/jbc.272. 27.17176)
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 17176-17181
-
-
Nowak, G.1
Pestic-Dragovich, L.2
Hozak, P.3
Philimonenko, A.4
Simerly, C.5
Schatten, G.6
De Lanerolle, P.7
-
26
-
-
79958858041
-
The RSC chromatin remodelling ATPase transpocates DNA with high force and small step size
-
doi:10. 1038/emboj.2011.141
-
Sirinakis, G., Clapier, C. R., Gao, Y., Viswanathan, R., Cairns, B. R. & Zhang, Y. L. 2011 The RSC chromatin remodelling ATPase transpocates DNA with high force and small step size. EMBO J. 30, 2364-2372. (doi:10. 1038/emboj.2011.141)
-
(2011)
EMBO J.
, vol.30
, pp. 2364-2372
-
-
Sirinakis, G.1
Clapier, C.R.2
Gao, Y.3
Viswanathan, R.4
Cairns, B.R.5
Zhang, Y.L.6
-
27
-
-
0030867320
-
Driving proteins off DNA using applied tension
-
doi:10.1016/S0006-3495(97)78248-1
-
Marko, J. F. & Siggia, E. D. 1997 Driving proteins off DNA using applied tension. Biophys. J. 73, 2173-2178. (doi:10.1016/S0006-3495(97)78248-1)
-
(1997)
Biophys. J.
, vol.73
, pp. 2173-2178
-
-
Marko, J.F.1
Siggia, E.D.2
-
28
-
-
0035845534
-
Compaction of single DNA molecules induced by binding of integration host factor (IHF)
-
doi:10.1073/pnas.181029198
-
Ali, B. M., Amit, R., Braslavsky, I., Oppenheim, A. B., Gileadi, O. & Stavans, J. 2001 Compaction of single DNA molecules induced by binding of integration host factor (IHF). Proc. Natl Acad. Sci. USA 98, 10 658-10 663. (doi:10.1073/pnas.181029198)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10658-10663
-
-
Ali, B.M.1
Amit, R.2
Braslavsky, I.3
Oppenheim, A.B.4
Gileadi, O.5
Stavans, J.6
-
29
-
-
2342454974
-
Dual architectural roles of HU: Formation of flexible hinges and rigid filaments
-
doi:10.1073/pnas. 0308230101
-
Van Noort, J., Verbrugge, S., Goosen, N., Dekker, C. & Dame, R. T. 2004 Dual architectural roles of HU: formation of flexible hinges and rigid filaments. Proc. Natl Acad. Sci. USA 101, 6969-6974. (doi:10.1073/pnas. 0308230101)
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6969-6974
-
-
Van Noort, J.1
Verbrugge, S.2
Goosen, N.3
Dekker, C.4
Dame, R.T.5
-
30
-
-
7244245362
-
Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6a, and HU reveals their ability to form highly stable DNA-protein complexes
-
doi:10.1021/bi048428o
-
Skoko, D., Wong, B., Johnson, R. C. & Marko, J. F. 2004 Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6a, and HU reveals their ability to form highly stable DNA-protein complexes. Biochemistry 43, 13 867-13 874. (doi:10.1021/bi048428o)
-
(2004)
Biochemistry
, vol.43
, pp. 13867-13874
-
-
Skoko, D.1
Wong, B.2
Johnson, R.C.3
Marko, J.F.4
-
31
-
-
80052258137
-
Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation
-
doi:10.1093/nar/ gkr141
-
Xiao, B., Zhang, H., Johnson, R. C. & Marko, J. F. 2011 Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation. Nucleic Acids Res. 39, 5568-5577. (doi:10.1093/nar/ gkr141)
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5568-5577
-
-
Xiao, B.1
Zhang, H.2
Johnson, R.C.3
Marko, J.F.4
-
32
-
-
19444384194
-
DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway
-
doi:10.1093/ nar/gki565
-
Van den Broek, B., Noom, M. C. & Wuite, G. J. 2005 DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway. Nucleic Acids Res. 33, 2676-2684. (doi:10.1093/ nar/gki565)
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2676-2684
-
-
Van Den Broek, B.1
Noom, M.C.2
Wuite, G.J.3
-
33
-
-
59649116344
-
Counting RAD51 proteins disassembling from nucleoprotein filaments under tension
-
doi:10.1038/ nature07581
-
Van Mameren, J., Modesti, M., Kanaar, R., Wyman, C., Peterman, E. J. & Wuite, G. J. 2009 Counting RAD51 proteins disassembling from nucleoprotein filaments under tension. Nature 457, 745-748. (doi:10.1038/ nature07581)
-
(2009)
Nature
, vol.457
, pp. 745-748
-
-
Van Mameren, J.1
Modesti, M.2
Kanaar, R.3
Wyman, C.4
Peterman, E.J.5
Wuite, G.J.6
-
34
-
-
10044236090
-
Femtonewton force spectroscopy of single extended DNA molecules
-
doi:10.1103/PhysRevLett.84.5014
-
Meiners, J. C. & Quake, S. R. 2000 Femtonewton force spectroscopy of single extended DNA molecules. Phys. Rev. Lett. 84, 5014-5017. (doi:10.1103/PhysRevLett.84.5014)
-
(2000)
Phys. Rev. Lett.
, vol.84
, pp. 5014-5017
-
-
Meiners, J.C.1
Quake, S.R.2
-
35
-
-
0032996355
-
DNA-protein cooperative binding through variable-range elastic coupling
-
doi:10.1016/S0006-3495(99) 77334-0
-
Rudnick, J. & Bruinsma, R. 1999 DNA-protein cooperative binding through variable-range elastic coupling. Biophys. J 76, 1725-1733. (doi:10.1016/S0006-3495(99) 77334-0)
-
(1999)
Biophys. J
, vol.76
, pp. 1725-1733
-
-
Rudnick, J.1
Bruinsma, R.2
-
36
-
-
65549158761
-
Twist- And tension mediated elastic coupling between DNA-binding proteins
-
doi:10.1103/PhysRevLett. 102.178102
-
Koslover, E. F. & Spakowitz, A. J. 2009 Twist- and tension mediated elastic coupling between DNA-binding proteins. Phys. Rev. Lett. 102, 178102. (doi:10.1103/PhysRevLett. 102.178102)
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 178102
-
-
Koslover, E.F.1
Spakowitz, A.J.2
-
37
-
-
0026624977
-
DNA looping
-
doi:10.1146/annurev.bi.61.070192.001215
-
Schleif, R. 1992 DNA looping. Annu. Rev. Biochem. 61, 199-223. (doi:10.1146/annurev.bi.61.070192.001215)
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 199-223
-
-
Schleif, R.1
-
40
-
-
33847100021
-
DNA supercoiling and bacterial gene expression
-
doi:10.3184/ 003685006783238317
-
Dorman, C. J. 2006 DNA supercoiling and bacterial gene expression. Sci. Prog. 89, 151-166. (doi:10.3184/ 003685006783238317)
-
(2006)
Sci. Prog.
, vol.89
, pp. 151-166
-
-
Dorman, C.J.1
-
41
-
-
0030072556
-
Histone-like protein HU as a specific transcriptional regulator: Co-factor role in repression of gal transcription by GAL repressor
-
doi:10.1046/j.1365-2443.1996.d01-236.x
-
Aki, T., Choy, H. E. & Adhya, S. 1996 Histone-like protein HU as a specific transcriptional regulator: co-factor role in repression of gal transcription by GAL repressor. Genes Cells 1, 179-188. (doi:10.1046/j.1365- 2443.1996.d01-236.x)
-
(1996)
Genes Cells
, vol.1
, pp. 179-188
-
-
Aki, T.1
Choy, H.E.2
Adhya, S.3
-
42
-
-
0141482089
-
Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping
-
doi:10. 1073/pnas.2034851100
-
Lia, G., Bensimon, D., Croquette, V., Allemand, J. F., Dunlap, D., Lewis, D. E., Adhya, S. & Finzi, L. 2003 Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping. Proc. Natl Acad. Sci. USA 100, 11 373-11 377. (doi:10. 1073/pnas.2034851100)
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11373-11377
-
-
Lia, G.1
Bensimon, D.2
Croquette, V.3
Allemand, J.F.4
Dunlap, D.5
Lewis, D.E.6
Adhya, S.7
Finzi, L.8
-
43
-
-
21244440748
-
Disruption of protein-mediated DNA looping by tension in the substrate DNA
-
doi:10.1529/biophysj.104.054486
-
Blumberg, S., Tkachenko, A. V. & Meiners, J. C. 2005 Disruption of protein-mediated DNA looping by tension in the substrate DNA. Biophys. J. 88, 1692-1701. (doi:10.1529/biophysj.104.054486)
-
(2005)
Biophys. J.
, vol.88
, pp. 1692-1701
-
-
Blumberg, S.1
Tkachenko, A.V.2
Meiners, J.C.3
-
44
-
-
27944487890
-
Statistics of loop formation along double helix DNAs
-
doi:10.1103/PhysRevE.71.061905
-
Yan, J., Kawamura, R. & Marko, J. F. 2005 Statistics of loop formation along double helix DNAs. Phys. Rev. E 71, 061905. (doi:10.1103/ PhysRevE.71.061905)
-
(2005)
Phys. Rev. E
, vol.71
, pp. 061905
-
-
Yan, J.1
Kawamura, R.2
Marko, J.F.3
-
45
-
-
75849124054
-
Femtonewton entropic forces can control the formation of protein-mediated DNA loops
-
doi:10.1103/PhysRevLett.104.048301
-
Chen, Y. F., Milstein, J. N. & Meiners, J. C. 2010 Femtonewton entropic forces can control the formation of protein-mediated DNA loops. Phys. Rev. Lett. 104, 048301. (doi:10.1103/PhysRevLett.104.048301)
-
(2010)
Phys. Rev. Lett.
, vol.104
, pp. 048301
-
-
Chen, Y.F.1
Milstein, J.N.2
Meiners, J.C.3
-
46
-
-
77954095767
-
Proteinmediated DNA loop formation and breakdown in a fluctuating environment
-
doi:10. 1103/PhysRevLett.104.258103
-
Chen, Y. F., Milstein, J. N. & Meiners, J. C. 2010 Proteinmediated DNA loop formation and breakdown in a fluctuating environment. Phys. Rev. Lett. 104, 258103. (doi:10. 1103/PhysRevLett.104.258103)
-
(2010)
Phys. Rev. Lett.
, vol.104
, pp. 258103
-
-
Chen, Y.F.1
Milstein, J.N.2
Meiners, J.C.3
-
47
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler, S., Eismann, E. R., Kramer, H. & Muller-Hill, B. 1990 The three operators of the lac operon cooperate in repression. EMBO J. 9, 973-979.
-
(1990)
EMBO J.
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Kramer, H.3
Muller-Hill, B.4
-
48
-
-
33845353937
-
Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA
-
doi:10.1529/biophysj.106.088518
-
Gemmen, G. J., Millin, R. & Smith, D. E. 2006 Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA. Biophys. J. 91, 4154-4165. (doi:10.1529/biophysj.106.088518)
-
(2006)
Biophys. J.
, vol.91
, pp. 4154-4165
-
-
Gemmen, G.J.1
Millin, R.2
Smith, D.E.3
-
49
-
-
33746824311
-
Tensiondependent DNA cleavage by restriction endonucleases: Two-site enzymes are 'switched off' at low force
-
doi:10.1073/ pnas.0604463103
-
Gemmen, G. J., Millin, R. & Smith, D. E. 2006 Tensiondependent DNA cleavage by restriction endonucleases: two-site enzymes are 'switched off' at low force. Proc. Natl Acad. Sci. USA 103, 11 555-11 560. (doi:10.1073/ pnas.0604463103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 11555-11560
-
-
Gemmen, G.J.1
Millin, R.2
Smith, D.E.3
-
50
-
-
0344011130
-
Diversity of type II restriction endonucleases that require two DNA recognition sites
-
doi:10.1093/nar/gkg836
-
Mucke, M., Kruger, D. H. & Reuter, M. 2003 Diversity of type II restriction endonucleases that require two DNA recognition sites. Nucleic Acids Res. 31, 6079-6084. (doi:10.1093/nar/gkg836)
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6079-6084
-
-
Mucke, M.1
Kruger, D.H.2
Reuter, M.3
-
51
-
-
0034999881
-
Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites
-
doi:10.1128/MCB.21.11.3830-3839.2001
-
Anderson, J. D. & Widom, J. 2001 Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites. Mol. Cell Biol. 21, 3830-3839. (doi:10.1128/MCB.21.11.3830-3839.2001)
-
(2001)
Mol. Cell Biol.
, vol.21
, pp. 3830-3839
-
-
Anderson, J.D.1
Widom, J.2
-
52
-
-
20444403749
-
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
-
doi:10.1016/j.molcel. 2005.05.003
-
Sekinger, E. A., Moqtaderi, Z. & Struhl, K. 2005 Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol. Cell 18, 735-748. (doi:10.1016/j.molcel. 2005.05.003)
-
(2005)
Mol. Cell
, vol.18
, pp. 735-748
-
-
Sekinger, E.A.1
Moqtaderi, Z.2
Struhl, K.3
-
53
-
-
0039837085
-
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
-
doi:10.1006/jmbi.1999.2686
-
Thastrom, A., Lowary, P. T., Widlund, H. R., Cao, H., Kubista, M. & Widom, J. 1999 Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J. Mol. Biol. 288, 213-229. (doi:10.1006/jmbi.1999.2686)
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 213-229
-
-
Thastrom, A.1
Lowary, P.T.2
Widlund, H.R.3
Cao, H.4
Kubista, M.5
Widom, J.6
-
54
-
-
33747500567
-
A genomic code for nucleosome positioning
-
doi:10.1038/nature04979
-
Segal, E., Fondufe-Mittendorf, Y., Chen, L., Thastrom, A., Field, Y., Moore, I. K., Wang, J. P. & Widom, J. 2006 A genomic code for nucleosome positioning. Nature 442, 772-778. (doi:10.1038/nature04979)
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.P.7
Widom, J.8
-
55
-
-
33846804071
-
Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics
-
doi:10.1091/ mbc.E06-09-0800
-
Yan, J., Maresca, T. J., Skoko, D., Adams, C. D., Xiao, B., Christensen, M. O., Heald, R. & Marko, J. F. 2007 Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics. Mol. Biol. Cell 18, 464-474. (doi:10.1091/ mbc.E06-09-0800)
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 464-474
-
-
Yan, J.1
Maresca, T.J.2
Skoko, D.3
Adams, C.D.4
Xiao, B.5
Christensen, M.O.6
Heald, R.7
Marko, J.F.8
-
56
-
-
67249108373
-
DNA relaxation dynamics as a probe for the intracellular environment
-
doi:10.1073/pnas. 0812723106
-
Fisher, J. K., Ballenger, M., O'Brien, E. T., Haase, J., Superfine, R. & Bloom, K. 2009 DNA relaxation dynamics as a probe for the intracellular environment. Proc. Natl Acad. Sci. USA 106, 9250-9255. (doi:10.1073/pnas. 0812723106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 9250-9255
-
-
Fisher, J.K.1
Ballenger, M.2
O'Brien, E.T.3
Haase, J.4
Superfine, R.5
Bloom, K.6
-
57
-
-
7544242666
-
The dynamic response of upstream DNA to transcription- Generated torsional stress
-
doi:10.1038/nsmb848
-
Kouzine, F., Liu, J., Sanford, S., Chung, H. J. & Levens, D. 2004 The dynamic response of upstream DNA to transcription- generated torsional stress. Nat. Struct. Mol. Biol. 11, 1092-1100. (doi:10.1038/nsmb848)
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1092-1100
-
-
Kouzine, F.1
Liu, J.2
Sanford, S.3
Chung, H.J.4
Levens, D.5
-
58
-
-
3142774839
-
Topological domain structure of the Escherichia coli chromosome
-
doi:10.1101/ gad.1207504
-
Postow, L., Hardy, C. D., Arsuaga, J. & Cozzarelli, N. R. 2004 Topological domain structure of the Escherichia coli chromosome. Genes Dev. 18, 1766-1779. (doi:10.1101/ gad.1207504)
-
(2004)
Genes Dev.
, vol.18
, pp. 1766-1779
-
-
Postow, L.1
Hardy, C.D.2
Arsuaga, J.3
Cozzarelli, N.R.4
-
59
-
-
0343240577
-
Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling
-
doi:10.1073/pnas.78.1.224
-
Sinden, R. R. & Pettijohn, D. E. 1981 Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling. Proc. Natl Acad. Sci. USA 78, 224-228. (doi:10.1073/pnas.78.1.224)
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, pp. 224-228
-
-
Sinden, R.R.1
Pettijohn, D.E.2
-
60
-
-
0024578495
-
DNA supercoiling and prokaryotic transcription
-
doi:10. 1016/0092-8674(89)90574-6
-
Pruss, G. J. & Drlica, K. 1989 DNA supercoiling and prokaryotic transcription. Cell 56, 521-523. (doi:10. 1016/0092-8674(89)90574-6)
-
(1989)
Cell
, vol.56
, pp. 521-523
-
-
Pruss, G.J.1
Drlica, K.2
-
61
-
-
34247517469
-
DNA-protein interactions and bacterial chromosome architecture
-
doi:10.1088/1478-3975/3/4/R01
-
Stavans, J. & Oppenheim, A. 2006 DNA-protein interactions and bacterial chromosome architecture. Phys. Biol. 3, R1-R10. (doi:10.1088/1478- 3975/3/4/R01)
-
(2006)
Phys. Biol.
, vol.3
-
-
Stavans, J.1
Oppenheim, A.2
-
62
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
doi:10.1126/ science.1181369
-
Lieberman-Aiden, E. et al. 2009 Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293. (doi:10.1126/ science.1181369)
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
63
-
-
4344705390
-
A mechanical basis for chromosome function
-
doi:10.1073/pnas.0402724101
-
Kleckner, N., Zickler, D., Jones, G. H., Dekker, J., Padmore, R., Henle, J. & Hutchinson, J. 2004 A mechanical basis for chromosome function. Proc. Natl Acad. Sci. USA 101, 12 592-12 597. (doi:10.1073/pnas.0402724101)
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 12592-12597
-
-
Kleckner, N.1
Zickler, D.2
Jones, G.H.3
Dekker, J.4
Padmore, R.5
Henle, J.6
Hutchinson, J.7
-
64
-
-
34250172721
-
The three-dimensional structure of human interphase chromosomes is related to the transcriptome map
-
doi:10.1128/ MCB.00208-07
-
Goetze, S. et al. 2007 The three-dimensional structure of human interphase chromosomes is related to the transcriptome map. Mol. Cell Biol. 27, 4475-4487. (doi:10.1128/ MCB.00208-07)
-
(2007)
Mol. Cell Biol.
, vol.27
, pp. 4475-4487
-
-
Goetze, S.1
-
65
-
-
36849095645
-
Nuclear architecture: Is it important for genome function and can we prove it?
-
doi:10. 1002/jcb.21521
-
Mateos-Langerak, J., Goetze, S., Leonhardt, H., Cremer, T., Van Driel, R. & Lanctot, C. 2007 Nuclear architecture: is it important for genome function and can we prove it? J. Cell Biochem. 102, 1067-1075. (doi:10. 1002/jcb.21521)
-
(2007)
J. Cell Biochem.
, vol.102
, pp. 1067-1075
-
-
Mateos-Langerak, J.1
Goetze, S.2
Leonhardt, H.3
Cremer, T.4
Van Driel, R.5
Lanctot, C.6
-
66
-
-
79551525710
-
Five challenges to bringing single-molecule force spectroscopy into living cells
-
doi:10.1038/nmeth0211-123
-
Dufrene, Y. F., Evans, E., Engel, A., Helenius, J., Gaub, H. E. & Muller, D. J. 2011 Five challenges to bringing single-molecule force spectroscopy into living cells. Nat. Methods 8, 123-127. (doi:10.1038/nmeth0211- 123)
-
(2011)
Nat. Methods
, vol.8
, pp. 123-127
-
-
Dufrene, Y.F.1
Evans, E.2
Engel, A.3
Helenius, J.4
Gaub, H.E.5
Muller, D.J.6
-
67
-
-
79951971261
-
Moving into the cell: Single-molecule studies of molecular motors in complex environments
-
doi:10.1038/nrm3062
-
Veigel, C. & Schmidt, C. F. 2011 Moving into the cell: single-molecule studies of molecular motors in complex environments. Nat. Rev. Mol. Cell Biol. 12, 163-176. (doi:10.1038/nrm3062)
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 163-176
-
-
Veigel, C.1
Schmidt, C.F.2
-
68
-
-
0031572293
-
Micromanipulation of chromosomes in mitotic vertebrate tissue cells: Tension controls the state of kinetochore movement
-
doi:10.1006/excr.1997.3691
-
Skibbens, R. V. & Salmon, E. D. 1997 Micromanipulation of chromosomes in mitotic vertebrate tissue cells: tension controls the state of kinetochore movement. Exp. Cell Res. 235, 314-324. (doi:10.1006/excr.1997.3691)
-
(1997)
Exp. Cell Res.
, vol.235
, pp. 314-324
-
-
Skibbens, R.V.1
Salmon, E.D.2
-
69
-
-
12844253726
-
Nanoscale operation of a living cell using an atomic force microscope with a nanoneedle
-
doi:10.1021/nl0485399
-
Obataya, I., Nakamura, C., Han, S., Nakamura, N. & Miyake, J. 2005 Nanoscale operation of a living cell using an atomic force microscope with a nanoneedle. Nano Lett. 5, 27-30. (doi:10.1021/nl0485399)
-
(2005)
Nano Lett.
, vol.5
, pp. 27-30
-
-
Obataya, I.1
Nakamura, C.2
Han, S.3
Nakamura, N.4
Miyake, J.5
-
70
-
-
35948943109
-
Penetration of living cell membranes with fortified carbon nanotube tips
-
doi:10.1021/la701878n
-
Vakarelski, I. U., Brown, S. C., Higashitani, K. & Moudgil, B. M. 2007 Penetration of living cell membranes with fortified carbon nanotube tips. Langmuir 23, 10 893-10 896. (doi:10.1021/la701878n)
-
(2007)
Langmuir
, vol.23
, pp. 10893-10896
-
-
Vakarelski, I.U.1
Brown, S.C.2
Higashitani, K.3
Moudgil, B.M.4
-
71
-
-
57149145788
-
Consequences of motor copy number on the intracellular transport of kinesin-1-driven lipid droplets
-
doi:10.1016/j.cell.2008.10.021
-
Shubeita, G. T., Tran, S. L., Xu, J., Vershinin, M., Cermelli, S., Cotton, S. L., Welte, M. A. & Gross, S. P. 2008 Consequences of motor copy number on the intracellular transport of kinesin-1-driven lipid droplets. Cell 135, 1098-1107. (doi:10.1016/j.cell.2008.10.021)
-
(2008)
Cell
, vol.135
, pp. 1098-1107
-
-
Shubeita, G.T.1
Tran, S.L.2
Xu, J.3
Vershinin, M.4
Cermelli, S.5
Cotton, S.L.6
Welte, M.A.7
Gross, S.P.8
-
72
-
-
34249719540
-
Direct observation of nanomechanical properties of chromatin in living cells
-
doi:10.1021/nl070603+
-
De Vries, A. H., Krenn, B. E., Van Driel, R., Subramaniam, V. & Kanger, J. S. 2007 Direct observation of nanomechanical properties of chromatin in living cells. Nano Lett. 7, 1424-1427. (doi:10.1021/nl070603+)
-
(2007)
Nano Lett.
, vol.7
, pp. 1424-1427
-
-
De Vries, A.H.1
Krenn, B.E.2
Van Driel, R.3
Subramaniam, V.4
Kanger, J.S.5
-
73
-
-
78650687023
-
Lighting up the mechanome
-
Lang, M. J. 2007 Lighting up the mechanome. Bridge 37, 11-16.
-
(2007)
Bridge
, vol.37
, pp. 11-16
-
-
Lang, M.J.1
|