-
1
-
-
0037169328
-
FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases
-
Aussel, L., Barre, F.X., Aroyo, M., Stasiak, A., Stasiak, A.Z., and Sherratt, D. 2002. FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases. Cell 108: 195-205.
-
(2002)
Cell
, vol.108
, pp. 195-205
-
-
Aussel, L.1
Barre, F.X.2
Aroyo, M.3
Stasiak, A.4
Stasiak, A.Z.5
Sherratt, D.6
-
2
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein J.A., Khodursky, A.B., Lin, P.H., Lin-Chao, S., and Cohen, S.N. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. 99: 9697-9702.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
3
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett III, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., et al. 1997. The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
4
-
-
0023117639
-
Use of site-specific recombination as a probe of DNA structure and metabolism in vivo
-
Bliska, J.B. and Cozzarelli, N.R. 1987. Use of site-specific recombination as a probe of DNA structure and metabolism in vivo. J. Mol. Biol. 194: 205-218.
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 205-218
-
-
Bliska, J.B.1
Cozzarelli, N.R.2
-
5
-
-
3042845898
-
The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure
-
in press
-
Case, R., Chang, Y., Smith, S., Gore, J., Cozzarelli, N., and Bustamante, C. 2004. The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure. Science (in press).
-
(2004)
Science
-
-
Case, R.1
Chang, Y.2
Smith, S.3
Gore, J.4
Cozzarelli, N.5
Bustamante, C.6
-
6
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
Champoux, J.J. 2001. DNA topoisomerases: Structure, function, and mechanism. Annu. ReV. Biochem. 70: 369-413.
-
(2001)
Annu. ReV. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
8
-
-
0016018740
-
Electron microscopic studies on the folded chromosome of Escherichia coli
-
Delius, H. and Worcel, A. 1974. Electron microscopic studies on the folded chromosome of Escherichia coli. Cold Spring Harb. Symp. Quant. Biol. 38: 53-58.
-
(1974)
Cold Spring Harb. Symp. Quant. Biol.
, vol.38
, pp. 53-58
-
-
Delius, H.1
Worcel, A.2
-
9
-
-
1542618333
-
Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome
-
Deng, S., Stein, R.A., and Higgins, N.P. 2004. Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome. Proc. Natl. Acad. Sci. 101: 3398-3403.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 3398-3403
-
-
Deng, S.1
Stein, R.A.2
Higgins, N.P.3
-
11
-
-
0037249352
-
Temporal regulation of topoisomerase IV activity in E. coli
-
Espeli, O., Levine, C., Hassing, H., and Marians, K.J. 2003. Temporal regulation of topoisomerase IV activity in E. coli. Mol. Cell 11: 189-201.
-
(2003)
Mol. Cell
, vol.11
, pp. 189-201
-
-
Espeli, O.1
Levine, C.2
Hassing, H.3
Marians, K.J.4
-
12
-
-
0023014127
-
Complete enzymatic replication of plasmids containing the origin of the Escherichia coli chromosome
-
Funnell, B.E., Baker, T.A., and Komberg, A. 1986. Complete enzymatic replication of plasmids containing the origin of the Escherichia coli chromosome. J. Biol. Chem. 261: 5616-5624.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 5616-5624
-
-
Funnell, B.E.1
Baker, T.A.2
Komberg, A.3
-
13
-
-
0017043747
-
Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase
-
Gellert, M., O'Dea, M.H., Itoh, T., and Tomizawa, J. 1976. Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase. Proc. Natl. Acad. Sci. 73: 4474-4478.
-
(1976)
Proc. Natl. Acad. Sci.
, vol.73
, pp. 4474-4478
-
-
Gellert, M.1
O'Dea, M.H.2
Itoh, T.3
Tomizawa, J.4
-
14
-
-
0001373485
-
Nalidixic acid resistance: A second genetic character involved in DNA gyrase activity
-
Gellert, M., Mizuuchi, K., O'Dea, M.H., Itoh, T., and Tomizawa, J.I. 1977. Nalidixic acid resistance: A second genetic character involved in DNA gyrase activity. Proc. Natl. Acad. Sci. 74: 4772-4776.
-
(1977)
Proc. Natl. Acad. Sci.
, vol.74
, pp. 4772-4776
-
-
Gellert, M.1
Mizuuchi, K.2
O'Dea, M.H.3
Itoh, T.4
Tomizawa, J.I.5
-
15
-
-
0010697814
-
Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease
-
Heitman, J., Zinder, N.D., and Model, P. 1989. Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease. Proc. Natl. Acad. Sci. 86: 2281-2285.
-
(1989)
Proc. Natl. Acad. Sci.
, vol.86
, pp. 2281-2285
-
-
Heitman, J.1
Zinder, N.D.2
Model, P.3
-
16
-
-
0029863159
-
Surveying a supercoil domain by using the γδ resolution system in Salmonella typhimurium
-
Higgins, N.P., Yang, X., Fu, Q., and Roth, J.R. 1996. Surveying a supercoil domain by using the γδ resolution system in Salmonella typhimurium. J. Bacteriol. 178: 2825-2835.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2825-2835
-
-
Higgins, N.P.1
Yang, X.2
Fu, Q.3
Roth, J.R.4
-
17
-
-
0024603181
-
Chromosome partitioning in Escherichia coli: Novel mutants producing anucleate cells
-
Hiraga, S., Niki, H., Ogura, T., Ichinose, C., Mori, H., Ezaki, B., and Jaffe, A. 1989. Chromosome partitioning in Escherichia coli: Novel mutants producing anucleate cells. J. Bacteriol. 171: 1496-1505.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 1496-1505
-
-
Hiraga, S.1
Niki, H.2
Ogura, T.3
Ichinose, C.4
Mori, H.5
Ezaki, B.6
Jaffe, A.7
-
18
-
-
0034652329
-
Closing the ring: Links between SMC proteins and chromosome partitioning, condensation, and supercoiling
-
Holmes, V.F. and Cozzarelli, N.R. 2000. Closing the ring: Links between SMC proteins and chromosome partitioning, condensation, and supercoiling. Proc. Natl. Acad. Sci. 97: 1322-1324.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 1322-1324
-
-
Holmes, V.F.1
Cozzarelli, N.R.2
-
19
-
-
0017045430
-
Electron microscopy of membrane-free folded chromosomes from Escherichia coli
-
Kavenoff, R. and Bowen, B.C. 1976. Electron microscopy of membrane-free folded chromosomes from Escherichia coli. Chromosoma 59: 89-101.
-
(1976)
Chromosoma
, vol.59
, pp. 89-101
-
-
Kavenoff, R.1
Bowen, B.C.2
-
20
-
-
0017235595
-
Electron microscopy of membrane-associated folded chromosomes of Escherichia coli
-
Kavenoff, R. and Ryder, O.A. 1976. Electron microscopy of membrane-associated folded chromosomes of Escherichia coli. Chromosoma 55: 13-25.
-
(1976)
Chromosoma
, vol.55
, pp. 13-25
-
-
Kavenoff, R.1
Ryder, O.A.2
-
21
-
-
0142172058
-
Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management
-
Khodursky, A.B., Bernstein, J.A., Peter, B.J., Rhodius, V., Wendisch, V.F., and Zimmer, D.P. 2003. Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol. Biol. 224: 61-78.
-
(2003)
Methods Mol. Biol.
, vol.224
, pp. 61-78
-
-
Khodursky, A.B.1
Bernstein, J.A.2
Peter, B.J.3
Rhodius, V.4
Wendisch, V.F.5
Zimmer, D.P.6
-
22
-
-
0034284411
-
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome
-
Kong, H., Lin, L.F., Porter, N., Stickel, S., Byrd, D., Posfai, J., and Roberts, R.J. 2000. Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids Res. 28: 3216-3223.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3216-3223
-
-
Kong, H.1
Lin, L.F.2
Porter, N.3
Stickel, S.4
Byrd, D.5
Posfai, J.6
Roberts, R.J.7
-
23
-
-
0036776765
-
Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo
-
Lindow, J.C., Britton, R.A., and Grossman, A.D. 2002. Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo. J. Bacteriol. 184: 5317-5322.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5317-5322
-
-
Lindow, J.C.1
Britton, R.A.2
Grossman, A.D.3
-
24
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu, L.F. and Wang, J.C. 1987. Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. 84: 7024-7027.
-
(1987)
Proc. Natl. Acad. Sci.
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
25
-
-
0027467896
-
Anchoring of DNA to the bacterial cytoplasmic membrane through cotranscriptional synthesis of polypeptides encoding membrane proteins or proteins for export: A mechanism of plasmid hypernegative supercoiling in mutants deficient in DNA topoisomerase I
-
Lynch, A.S. and Wang, J.C. 1993. Anchoring of DNA to the bacterial cytoplasmic membrane through cotranscriptional synthesis of polypeptides encoding membrane proteins or proteins for export: A mechanism of plasmid hypernegative supercoiling in mutants deficient in DNA topoisomerase I. J. Bacteriol. 175: 1645-1655.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 1645-1655
-
-
Lynch, A.S.1
Wang, J.C.2
-
26
-
-
0032928724
-
Phage Mu transposition immunity reflects supercoil domain structure of the chromosome
-
Manna, D. and Higgins, N.P. 1999. Phage Mu transposition immunity reflects supercoil domain structure of the chromosome. Mol. Microbiol. 32: 595-606.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 595-606
-
-
Manna, D.1
Higgins, N.P.2
-
27
-
-
0026069582
-
The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli
-
Niki, H., Jaffe, A., Imamura, R., Ogura, T., and Hiraga, S. 1991. The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli. EMBO J. 10: 183-193.
-
(1991)
EMBO J.
, vol.10
, pp. 183-193
-
-
Niki, H.1
Jaffe, A.2
Imamura, R.3
Ogura, T.4
Hiraga, S.5
-
29
-
-
0037180450
-
Mitotic chromosomes are chromatin networks without a mechanically contiguous protein scaffold
-
Poirier, M.G. and Marko, J.F. 2002. Mitotic chromosomes are chromatin networks without a mechanically contiguous protein scaffold. Proc. Natl. Acad. Sci. 99: 15393-15397.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 15393-15397
-
-
Poirier, M.G.1
Marko, J.F.2
-
30
-
-
0024578495
-
DNA supercoiling and prokaryotic transcription
-
Pruss, G.J. and Drlica, K. 1989. DNA supercoiling and prokaryotic transcription. Cell 56: 521-523.
-
(1989)
Cell
, vol.56
, pp. 521-523
-
-
Pruss, G.J.1
Drlica, K.2
-
31
-
-
0034652090
-
Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I
-
Sawitzke, J.A. and Austin, S. 2000. Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I. Proc. Natl. Acad. Sci. 97: 1671-1676.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 1671-1676
-
-
Sawitzke, J.A.1
Austin, S.2
-
32
-
-
0035077726
-
Transcription induces a supercoil domain barrier in bacteriophage Mu
-
Scheirer, K.E. and Higgins, N.P. 2001. Transcription induces a supercoil domain barrier in bacteriophage Mu. Biochimie 83: 155-159.
-
(2001)
Biochimie
, vol.83
, pp. 155-159
-
-
Scheirer, K.E.1
Higgins, N.P.2
-
33
-
-
3142665836
-
A topological view of the replicon
-
Schvartzman, J.B. and Stasiak, A. 2004. A topological view of the replicon. EMBO Rep. 5: 256-261.
-
(2004)
EMBO Rep.
, vol.5
, pp. 256-261
-
-
Schvartzman, J.B.1
Stasiak, A.2
-
34
-
-
0041853574
-
Bacterial chromosome dynamics
-
Sherratt, D.J. 2003. Bacterial chromosome dynamics. Science 301: 780-785.
-
(2003)
Science
, vol.301
, pp. 780-785
-
-
Sherratt, D.J.1
-
35
-
-
0343240577
-
Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling
-
Sinden, R.R. and Pettijohn, D.E. 1981. Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling. Proc. Natl. Acad. Sci. 78: 224-228.
-
(1981)
Proc. Natl. Acad. Sci.
, vol.78
, pp. 224-228
-
-
Sinden, R.R.1
Pettijohn, D.E.2
-
36
-
-
0018962604
-
Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: Analogous measurements in insect and human cells
-
Sinden, R.R., Carlson, J.O., and Pettijohn, D.E. 1980. Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: Analogous measurements in insect and human cells. Cell 21: 773-783.
-
(1980)
Cell
, vol.21
, pp. 773-783
-
-
Sinden, R.R.1
Carlson, J.O.2
Pettijohn, D.E.3
-
37
-
-
0000457477
-
The architecture of a functional chromosome
-
Trun, N.J. and Marko, J. 1998. The architecture of a functional chromosome. ASM News 64: 276-283.
-
(1998)
ASM News
, vol.64
, pp. 276-283
-
-
Trun, N.J.1
Marko, J.2
-
38
-
-
0001436335
-
Unlinking of DNA by topoisomerases during DNA replication
-
(ed. D.M. Lilley). Springer-Verlag, Berlin
-
Ullsperger, C., Vologodskii, A.V., and Cozzarelli, N.R. 1995. Unlinking of DNA by topoisomerases during DNA replication. In Nucleic Acids and molecular biology (ed. D.M. Lilley), pp. 115-142. Springer-Verlag, Berlin.
-
(1995)
Nucleic Acids and Molecular Biology
, pp. 115-142
-
-
Ullsperger, C.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
39
-
-
0027171352
-
Monte Carlo analysis of the conformation of DNA catenanes
-
Vologodskii, A.V. and Cozzarelli, N.R. 1993. Monte Carlo analysis of the conformation of DNA catenanes. J. Mol. Biol. 232: 1130-1140.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 1130-1140
-
-
Vologodskii, A.V.1
Cozzarelli, N.R.2
-
40
-
-
0015506478
-
On the structure of the folded chromosome of Escherichia coli
-
Worcel, A. and Burgi, E. 1972. On the structure of the folded chromosome of Escherichia coli. J. Mol. Biol. 71: 127-147.
-
(1972)
J. Mol. Biol.
, vol.71
, pp. 127-147
-
-
Worcel, A.1
Burgi, E.2
-
41
-
-
0034705144
-
An efficient recombination system for chromosome engineering in Escherichia coli
-
Yu, D., Ellis, H.M., Lee, E.C., Jenkins, N.A., Copeland, N.G., and Court, D.L. 2000. An efficient recombination system for chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. 97: 5978-5983.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 5978-5983
-
-
Yu, D.1
Ellis, H.M.2
Lee, E.C.3
Jenkins, N.A.4
Copeland, N.G.5
Court, D.L.6
-
42
-
-
0025647116
-
Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
-
Zechiedrich, E.L. and Osheroff, N. 1990. Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. EMBO J. 9: 4555-4562.
-
(1990)
EMBO J.
, vol.9
, pp. 4555-4562
-
-
Zechiedrich, E.L.1
Osheroff, N.2
-
43
-
-
0030771373
-
Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli
-
Zechiedrich, E.L., Khodursky, A.B., and Cozzarelli, N.R. 1997. Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli. Genes & Dev. 11: 2580-2592.
-
(1997)
Genes & Dev.
, vol.11
, pp. 2580-2592
-
-
Zechiedrich, E.L.1
Khodursky, A.B.2
Cozzarelli, N.R.3
|