메뉴 건너뛰기




Volumn 21, Issue 11, 2001, Pages 3830-3839

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; POLY(DEOXYADENYLATE DEOXYTHYMIDYLATE);

EID: 0034999881     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.21.11.3830-3839.2001     Document Type: Article
Times cited : (129)

References (40)
  • 1
    • 0035815105 scopus 로고    scopus 로고
    • Effects of histone acetylation on the dynamic equilibrium accessibility of nucleosomal DNA target sites
    • Anderson, J. D., P. T. Lowary, and J. Widom. 2001. Effects of histone acetylation on the dynamic equilibrium accessibility of nucleosomal DNA target sites. J. Mol. Biol. 307:977-985.
    • (2001) J. Mol. Biol. , vol.307 , pp. 977-985
    • Anderson, J.D.1    Lowary, P.T.2    Widom, J.3
  • 2
    • 0034598944 scopus 로고    scopus 로고
    • Sequence-and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites
    • Anderson, J. D., and J. Widom. 2000. Sequence-and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites. J. Mol. Biol. 296:979-987.
    • (2000) J. Mol. Biol. , vol.296 , pp. 979-987
    • Anderson, J.D.1    Widom, J.2
  • 3
    • 0028931130 scopus 로고
    • An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes
    • Behe, M. J. 1995. An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes. Nucleic Acids Res. 23:689-695.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 689-695
    • Behe, M.J.1
  • 5
    • 0023665064 scopus 로고
    • Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase
    • Chen, W., S. Tabor, and K. Struhl. 1987. Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase. Cell 50:1047-1055.
    • (1987) Cell , vol.50 , pp. 1047-1055
    • Chen, W.1    Tabor, S.2    Struhl, K.3
  • 6
    • 0033617334 scopus 로고    scopus 로고
    • Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle-and developmentally regulated promoter
    • Cosma, M. P., T. Tanaka, and K. Nasmyth. 1999. Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle-and developmentally regulated promoter. Cell 97:299-311.
    • (1999) Cell , vol.97 , pp. 299-311
    • Cosma, M.P.1    Tanaka, T.2    Nasmyth, K.3
  • 7
    • 0027203669 scopus 로고
    • A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend
    • DiGabriele, A. D., and T. A. Steitz. 1993. A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend. J. Mol. Biol. 231:1024-1039.
    • (1993) J. Mol. Biol. , vol.231 , pp. 1024-1039
    • DiGabriele, A.D.1    Steitz, T.A.2
  • 8
    • 0027220943 scopus 로고
    • Lifetime of the histone octamer studied by continuous-flow quasielastic light scattering-test of a model for nucleosome transcription
    • Feng, H.-P., D. S. Scherl, and J. Widom. 1993. Lifetime of the histone octamer studied by continuous-flow quasielastic light scattering-test of a model for nucleosome transcription. Biochemistry 32:7824-7831.
    • (1993) Biochemistry , vol.32 , pp. 7824-7831
    • Feng, H.-P.1    Scherl, D.S.2    Widom, J.3
  • 9
    • 0029928550 scopus 로고    scopus 로고
    • Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals
    • Flaus, A., K. Luger, S. Tan, and T. J. Richmond. 1996. Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proc. Natl. Acad. Sci. USA 93:1370-1375.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1370-1375
    • Flaus, A.1    Luger, K.2    Tan, S.3    Richmond, T.J.4
  • 10
    • 0026740954 scopus 로고
    • Isolated oligopurine tracts do not significantly affect the binding of DNA to nucleosomes
    • Getts, R. C., and M. J. Behe. 1992. Isolated oligopurine tracts do not significantly affect the binding of DNA to nucleosomes. Biochemistry 31:5380-5385.
    • (1992) Biochemistry , vol.31 , pp. 5380-5385
    • Getts, R.C.1    Behe, M.J.2
  • 11
    • 0033603238 scopus 로고    scopus 로고
    • ATP-dependent nucleosome sliding mediated by the chromatin remodeling complex NURF
    • Hamiche, A., R. Sandaltzopoulos, D. A. Gdula, and C. Wu. 1999. ATP-dependent nucleosome sliding mediated by the chromatin remodeling complex NURF. Cell 97:833-842.
    • (1999) Cell , vol.97 , pp. 833-842
    • Hamiche, A.1    Sandaltzopoulos, R.2    Gdula, D.A.3    Wu, C.4
  • 12
    • 0026094357 scopus 로고
    • The histone core exerts a dominant constraint on the structure of DNA in a nucleasome
    • Hayes, J., J. Bashkin, T. D. Tullius, and A. P. Wolffe. 1991. The histone core exerts a dominant constraint on the structure of DNA in a nucleasome. Biochemistry 30:8434-8440.
    • (1991) Biochemistry , vol.30 , pp. 8434-8440
    • Hayes, J.1    Bashkin, J.2    Tullius, T.D.3    Wolffe, A.P.4
  • 13
    • 0029026719 scopus 로고
    • Poly(dA:DT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
    • Iyer, V., and K. Struhl. 1995. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J. 14: 2570-2579.
    • (1995) EMBO J. , vol.14 , pp. 2570-2579
    • Iyer, V.1    Struhl, K.2
  • 15
    • 0033568312 scopus 로고    scopus 로고
    • ATP-dependent remodeling and acetylation as regulators of chromatin fluidity
    • Kingston, R. E., and G. J. Narlikar. 1999. ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes Dev. 13:2339-2352.
    • (1999) Genes Dev. , vol.13 , pp. 2339-2352
    • Kingston, R.E.1    Narlikar, G.J.2
  • 16
    • 0033603212 scopus 로고    scopus 로고
    • Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer
    • Langst, G., E. J. Bonte, D. F. V. Corona, and P. B. Becker. 1999. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer. Cell 97:843-852.
    • (1999) Cell , vol.97 , pp. 843-852
    • Langst, G.1    Bonte, E.J.2    Corona, D.F.V.3    Becker, P.B.4
  • 17
    • 0025194240 scopus 로고
    • Poly(dA)-poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter
    • Losa, R., S. Omari, and F. Thoma. 1990. Poly(dA)-poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter. Nucleic Acids Res. 18:3495-3502.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3495-3502
    • Losa, R.1    Omari, S.2    Thoma, F.3
  • 18
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
    • Lowary, P. T., and J. Widom. 1998. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J. Mol. Biol. 276:19-42.
    • (1998) J. Mol. Biol. , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 19
    • 0031030691 scopus 로고    scopus 로고
    • Nucleosome packaging and nucleosome positioning of genomic DNA
    • Lowary, P. T., and J. Widom. 1997. Nucleosome packaging and nucleosome positioning of genomic DNA. Proc. Natl. Acad. Sci. USA 94:1183-1188.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1183-1188
    • Lowary, P.T.1    Widom, J.2
  • 20
    • 0031587289 scopus 로고    scopus 로고
    • Characterization of nucleosome core particles containing histone proteins made in bacteria
    • Luger, K., T. J. Rechsteiner, A. J. Flaus, M. M. Y. Waye, and T. J. Richmond. 1997. Characterization of nucleosome core particles containing histone proteins made in bacteria. J. Mol. Biol. 272:301-311.
    • (1997) J. Mol. Biol. , vol.272 , pp. 301-311
    • Luger, K.1    Rechsteiner, T.J.2    Flaus, A.J.3    Waye, M.M.Y.4    Richmond, T.J.5
  • 21
    • 0031587983 scopus 로고    scopus 로고
    • Oligoadenosine tracts favor nucleosome formation
    • Mahloogi, H., and M. J. Behe. 1997. Oligoadenosine tracts favor nucleosome formation. Biochem. Biophys. Res. Commun. 235:663-668.
    • (1997) Biochem. Biophys. Res. Commun. , vol.235 , pp. 663-668
    • Mahloogi, H.1    Behe, M.J.2
  • 22
    • 0033820936 scopus 로고    scopus 로고
    • Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements
    • Mai, X., S. Chou, and K. Struhl. 2000. Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements. Mol. Cell. Biol. 20:6668-6676.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 6668-6676
    • Mai, X.1    Chou, S.2    Struhl, K.3
  • 23
    • 0023513912 scopus 로고
    • The structure of an oligo(dA)-oligo(dT) tract and its biological implications
    • Nelson, H. C., J. T. Finch, B. F. Luisi, and A. Klug. 1987. The structure of an oligo(dA)-oligo(dT) tract and its biological implications. Nature 330:221-226.
    • (1987) Nature , vol.330 , pp. 221-226
    • Nelson, H.C.1    Finch, J.T.2    Luisi, B.F.3    Klug, A.4
  • 24
    • 0034614487 scopus 로고    scopus 로고
    • Sequence-dependent DNA structure: Tetranucleotide conformational maps
    • Packer, M. J., M. P. Dauncey, and C. A. Hunter. 2000. Sequence-dependent DNA structure: tetranucleotide conformational maps. J. Mol. Biol. 295:85-103.
    • (2000) J. Mol. Biol. , vol.295 , pp. 85-103
    • Packer, M.J.1    Dauncey, M.P.2    Hunter, C.A.3
  • 25
    • 0030964249 scopus 로고    scopus 로고
    • Nucleosome mobility and the maintenance of nucleosome positioning
    • Pazin, M. J., P. Bhargava, E. P. Geiduschek, and J. T. Kadonaga. 1997. Nucleosome mobility and the maintenance of nucleosome positioning. Science 276:809-812.
    • (1997) Science , vol.276 , pp. 809-812
    • Pazin, M.J.1    Bhargava, P.2    Geiduschek, E.P.3    Kadonaga, J.T.4
  • 26
    • 0034026193 scopus 로고    scopus 로고
    • Promoter pargeting and chromatin remodeling by the SWI/SNF complex
    • Peterson, C. L., and J. L. Workman. 2000. Promoter pargeting and chromatin remodeling by the SWI/SNF complex. Curr. Opin. Genet. Dev. 10:187-192.
    • (2000) Curr. Opin. Genet. Dev. , vol.10 , pp. 187-192
    • Peterson, C.L.1    Workman, J.L.2
  • 27
    • 0034724562 scopus 로고    scopus 로고
    • Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes
    • Polach, K. J., P. T. Lowary, and J. Widom. 2000. Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes. J. Mol. Biol. 298:211-223.
    • (2000) J. Mol. Biol. , vol.298 , pp. 211-223
    • Polach, K.J.1    Lowary, P.T.2    Widom, J.3
  • 28
    • 0028791330 scopus 로고
    • Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation
    • Polach, K. J., and J. Widom. 1995. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation. J. Mol. Biol. 254:130-149.
    • (1995) J. Mol. Biol. , vol.254 , pp. 130-149
    • Polach, K.J.1    Widom, J.2
  • 29
    • 0033000670 scopus 로고    scopus 로고
    • Restriction enzymes as probes of nucleosome stability
    • Polach, K. J., and J. Widom. 1999. Restriction enzymes as probes of nucleosome stability. Methods Enzymol. 304:278-298.
    • (1999) Methods Enzymol. , vol.304 , pp. 278-298
    • Polach, K.J.1    Widom, J.2
  • 30
    • 0031578809 scopus 로고    scopus 로고
    • Coupled enzymatic assays for the rate and mechanism of DNA site-exposure in a nucleosome
    • Protacio, R. U., K. J. Polach, and J. Widom. 1997. Coupled enzymatic assays for the rate and mechanism of DNA site-exposure in a nucleosome. J. Mol. Biol. 274:708-721.
    • (1997) J. Mol. Biol. , vol.274 , pp. 708-721
    • Protacio, R.U.1    Polach, K.J.2    Widom, J.3
  • 31
    • 0024456709 scopus 로고
    • Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin
    • Satchwell, S. C., and A. A. Travers. 1989. Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin. EMBO J. 8:229-238.
    • (1989) EMBO J. , vol.8 , pp. 229-238
    • Satchwell, S.C.1    Travers, A.A.2
  • 32
    • 0029882454 scopus 로고    scopus 로고
    • Reversible oligonucleosome self-association: Dependence on divalent cations and core histone tail domains
    • Schwarz, P. M., A. Felthauser, T. M. Fletcher, and J. C. Hansen. 1996. Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains. Biochemistry 35:4009-4015.
    • (1996) Biochemistry , vol.35 , pp. 4009-4015
    • Schwarz, P.M.1    Felthauser, A.2    Fletcher, T.M.3    Hansen, J.C.4
  • 33
    • 0034600950 scopus 로고    scopus 로고
    • Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA): Poly(dT) tracts in vim
    • Shimizu, M., T. Mori, T. Sakurai, and H. Shindo. 2000. Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA): poly(dT) tracts in vim. EMBO J. 19:3358-3365.
    • (2000) EMBO J. , vol.19 , pp. 3358-3365
    • Shimizu, M.1    Mori, T.2    Sakurai, T.3    Shindo, H.4
  • 34
    • 0020695571 scopus 로고
    • Structural features of a phased nucleosome core particle
    • Simpson, R. T., and D. W. Stafford. 1983. Structural features of a phased nucleosome core particle. Proc. Natl. Acad. Sci. USA 80:51-55.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 51-55
    • Simpson, R.T.1    Stafford, D.W.2
  • 35
    • 0011031885 scopus 로고
    • Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast
    • Struhl, K. 1985. Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast. Proc. Natl. Acad. Sci. USA 82:8419-8423.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 8419-8423
    • Struhl, K.1
  • 36
    • 0033230583 scopus 로고    scopus 로고
    • Guilt by association: Non-coding RNAs, chromosome-specific proteins and dosage compensation in drosophila
    • Stuckenholz, C., Y. Kageyama, and M. I. Kuroda. 1999. Guilt by association: non-coding RNAs, chromosome-specific proteins and dosage compensation in Drosophila. Trends Genet. 15:454-458.
    • (1999) Trends Genet. , vol.15 , pp. 454-458
    • Stuckenholz, C.1    Kageyama, Y.2    Kuroda, M.I.3
  • 37
    • 0039837085 scopus 로고    scopus 로고
    • Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
    • Thåström, A., P. T. Lowary, H. R. Widlund, H. Cao, M. Kubista, and J. Widom. 1999. Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J. Mol. Biol. 288:213-229.
    • (1999) J. Mol. Biol. , vol.288 , pp. 213-229
    • Thåström, A.1    Lowary, P.T.2    Widlund, H.R.3    Cao, H.4    Kubista, M.5    Widom, J.6
  • 39
    • 0027424469 scopus 로고
    • Twist constraints on linker DNA in the 30-nm chromatin fiber: Implications for nucleosome phasing
    • Yao, J., P. T. Lowary, and J. Widom. 1993. Twist constraints on linker DNA in the 30-nm chromatin fiber: implications for nucleosome phasing. Proc. Natl. Acad. Sci. USA 90:9364-9368.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 9364-9368
    • Yao, J.1    Lowary, P.T.2    Widom, J.3
  • 40
    • 0030297549 scopus 로고    scopus 로고
    • A specialized nucleosome modulates transcription factor access to a C. Glabrata metal responsive promoter
    • Zhu, Z., and D. J. Thiele. 1996. A specialized nucleosome modulates transcription factor access to a C. glabrata metal responsive promoter. Cell 87:459-470.
    • (1996) Cell , vol.87 , pp. 459-470
    • Zhu, Z.1    Thiele, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.