-
2
-
-
0000457477
-
Architecture of the bacterial chromosome
-
Trun, N. J. and Marko, J. F. (1998) Architecture of the bacterial chromosome. ASM Press, 64(5), 276-283.
-
(1998)
ASM Press
, vol.64
, Issue.5
, pp. 276-283
-
-
Trun, N.J.1
Marko, J.F.2
-
3
-
-
18444412915
-
Measuring chromosome dynamics on different time scales using resolvases with varying half-lives
-
Stein, R. A., Deng, S. and Higgins, N. P. (2005) Measuring chromosome dynamics on different time scales using resolvases with varying half-lives. Mol. Microbiol., 56, 1049-1061.
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 1049-1061
-
-
Stein, R.A.1
Deng, S.2
Higgins, N.P.3
-
4
-
-
25144495578
-
Organization of supercoil domains and their reorganization by transcription
-
Deng, S., Stein, R. A. and Higgins, N. P. (2005) Organization of supercoil domains and their reorganization by transcription. Mol. Microbiol., 57, 1511-1521.
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 1511-1521
-
-
Deng, S.1
Stein, R.A.2
Higgins, N.P.3
-
5
-
-
3142774839
-
Topological domain structure of the Escherichia coli chromosome
-
Postow, L., Hardy, C. D., Arsuaga, J. and Cozzarelli, N. R. (2004) Topological domain structure of the Escherichia coli chromosome. Genes Dev., 18, 1766-1779.
-
(2004)
Genes Dev.
, vol.18
, pp. 1766-1779
-
-
Postow, L.1
Hardy, C.D.2
Arsuaga, J.3
Cozzarelli, N.R.4
-
6
-
-
0027367175
-
Chromosomal supercoiling in Escherichia coli
-
Miller, W. G. and Simons, R. W. (1993) Chromosomal supercoiling in Escherichia coli. Mol. Microbiol., 10, 675-684.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 675-684
-
-
Miller, W.G.1
Simons, R.W.2
-
7
-
-
0027524617
-
Chromosomal domains of super-coiling in Salmonella typhimurium
-
Pavitt, G. D. and Higgins, C. F. (1993) Chromosomal domains of super-coiling in Salmonella typhimurium. Mol. Microbiol., 10, 685-696.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 685-696
-
-
Pavitt, G.D.1
Higgins, C.F.2
-
8
-
-
31344453142
-
Cooperative transitions of isolated Escherichia coli nucleoids: Implications for the nucleoid of a cellular phase
-
Zimmerman, S. B. (2006) Cooperative transitions of isolated Escherichia coli nucleoids: implications for the nucleoid of a cellular phase. J. Struct. Biol., 153, 160-175.
-
(2006)
J. Struct. Biol.
, vol.153
, pp. 160-175
-
-
Zimmerman, S.B.1
-
9
-
-
0035945265
-
An architectural role for the Escherichia coli chromatin protein FIS in organizing DNA
-
Schneider, R., Lurz, R., Lüder, R., Tolksdorf, C., Travers, A. and Muskhelishvili, G. (2001) An architectural role for the Escherichia coli chromatin protein FIS in organizing DNA. Nucleic Acids Res., 29, 5107-5114.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 5107-5114
-
-
Schneider, R.1
Lurz, R.2
Lüder, R.3
Tolksdorf, C.4
Travers, A.5
Muskhelishvili, G.6
-
10
-
-
0037381650
-
Regulation of gene expression by histone-like proteins in bacteria
-
Dorman, C. J. and Deighan, P. (2003) Regulation of gene expression by histone-like proteins in bacteria. Curr. Opin. Genet. Dev., 13, 179-184.
-
(2003)
Curr. Opin. Genet. Dev.
, vol.13
, pp. 179-184
-
-
Dorman, C.J.1
Deighan, P.2
-
12
-
-
0012645889
-
DNA topology and regulation of bacterial gene expression
-
Dorman, C. J. (2002) DNA topology and regulation of bacterial gene expression. SGM Symp., 61, 39-56.
-
(2002)
SGM Symp.
, vol.61
, pp. 39-56
-
-
Dorman, C.J.1
-
13
-
-
0023870174
-
DNA supercoiling in vivo
-
Giaever, G. N., Snyder, L. and Wang, J. C. (1988) DNA supercoiling in vivo. Biophys. Chem., 29, 7-15.
-
(1988)
Biophys. Chem.
, vol.29
, pp. 7-15
-
-
Giaever, G.N.1
Snyder, L.2
Wang, J.C.3
-
14
-
-
0026555506
-
Control of bacterial DNA supercoiling
-
Drlica, K. (1992) Control of bacterial DNA supercoiling. Mol. Microbiol., 6, 425-433.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 425-433
-
-
Drlica, K.1
-
15
-
-
0020306535
-
Escherichia coli DNA topoisomerase I mutants have compensatory mutations at or near DNA gyrase genes
-
DiNardo, S., Voelkel, K. A., Sternglanz, R., Reynolds, A. E. and Wright, A. (1983) Escherichia coli DNA topoisomerase I mutants have compensatory mutations at or near DNA gyrase genes. Cold Spring Harbor Symp. Quant. Biol., 47, 779-784.
-
(1983)
Cold Spring Harbor Symp. Quant. Biol.
, vol.47
, pp. 779-784
-
-
DiNardo, S.1
Voelkel, K.A.2
Sternglanz, R.3
Reynolds, A.E.4
Wright, A.5
-
16
-
-
0028148504
-
Escherichia coli tyrT gene transcription is sensitive to DNA supercoiling in its native chromosomal context: Effect of DNA topoisomerase IV over-expression on tyrT promoter function
-
Free, A. and Dorman, C. J. 1994. Escherichia coli tyrT gene transcription is sensitive to DNA supercoiling in its native chromosomal context: effect of DNA topoisomerase IV over-expression on tyrT promoter function. Mol. Microbiol., 14, 151-161.
-
(1994)
Mol. Microbiol.
, vol.14
, pp. 151-161
-
-
Free, A.1
Dorman, C.J.2
-
17
-
-
0031407768
-
DNA gyrase, topoisomerase IV, and the 4-quinolones
-
Drlica, K. and Zhao, X. (1997) DNA gyrase, topoisomerase IV, and the 4-quinolones. Microbiol. Mol. Biol. Rev., 61, 377-392.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 377-392
-
-
Drlica, K.1
Zhao, X.2
-
18
-
-
0024457459
-
DNA supercoiling in Escherichia coli: TopA mutations can be suppressed by DNA amplifications involving the tolC locus
-
Dorman, C. J., Lynch, A. S., Ní Bhriain, N. and Higgins, C. F. (1989) DNA supercoiling in Escherichia coli: topA mutations can be suppressed by DNA amplifications involving the tolC locus. Mol. Microbiol., 3, 531-540.
-
(1989)
Mol. Microbiol.
, vol.3
, pp. 531-540
-
-
Dorman, C.J.1
Lynch, A.S.2
Ní Bhriain, N.3
Higgins, C.F.4
-
19
-
-
0025027077
-
New topoisomerase essential for chromosome segregation in E. coli
-
Kato, J.-L., Nishimura, Y., Imamura, R., Niki, H., Hiraga, S. and Suzuki, H. (1990) New topoisomerase essential for chromosome segregation in E. coli. Cell, 63, 393-404.
-
(1990)
Cell
, vol.63
, pp. 393-404
-
-
Kato, J.-L.1
Nishimura, Y.2
Imamura, R.3
Niki, H.4
Hiraga, S.5
Suzuki, H.6
-
20
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
Hatfield, G. W. and Benham, C. J. (2002) DNA topology-mediated control of global gene expression in Escherichia coli. Ann. Rev. Genet., 36, 175-203.
-
(2002)
Ann. Rev. Genet.
, vol.36
, pp. 175-203
-
-
Hatfield, G.W.1
Benham, C.J.2
-
21
-
-
13444288385
-
DNA supercoiling - A global transcriptional regulator for enterobacterial growth?
-
Travers, A. and Muskhelishvili, G. (2005) DNA supercoiling - a global transcriptional regulator for enterobacterial growth? Nat. Rev. Microbiol., 3, 157-169.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 157-169
-
-
Travers, A.1
Muskhelishvili, G.2
-
23
-
-
0038010151
-
DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli
-
Bordes, P., Conter, A., Morales, V., Bouvier, J., Kolb, A. and Gutierrez, C. (2003) DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli. Mol. Microbiol., 48, 561-571.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 561-571
-
-
Bordes, P.1
Conter, A.2
Morales, V.3
Bouvier, J.4
Kolb, A.5
Gutierrez, C.6
-
24
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu, L. F. and Wang, J. C. (1987) Supercoiling of the DNA template during transcription. Proc. Natl Acad. Sci. USA, 84, 7024-7027.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
25
-
-
0029092555
-
Long-range interaction between two promoters: Activation of the leu-500 promoter by a distant upstream promoter
-
Wu, H. Y., Tan, J. and Fang, M. (1995) Long-range interaction between two promoters: activation of the leu-500 promoter by a distant upstream promoter. Cell, 82, 445-451.
-
(1995)
Cell
, vol.82
, pp. 445-451
-
-
Wu, H.Y.1
Tan, J.2
Fang, M.3
-
26
-
-
0023833060
-
A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli
-
Higgins, C. F., Dorman, C. J., Stirling, D. A., Waddell, L., Booth, I. R., May, G. and Bremer, E. (1988) A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli. Cell, 52, 569-584.
-
(1988)
Cell
, vol.52
, pp. 569-584
-
-
Higgins, C.F.1
Dorman, C.J.2
Stirling, D.A.3
Waddell, L.4
Booth, I.R.5
May, G.6
Bremer, E.7
-
27
-
-
0024024835
-
DNA supercoiling and the anaerobic and growth-phase regulation of tonB gene expression
-
Dorman, C. J., Barr, G. C., Ní Bhriain, N. and Higgins, C. F. (1988) DNA supercoiling and the anaerobic and growth-phase regulation of tonB gene expression. J. Bacteriol., 170, 2816-2826.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 2816-2826
-
-
Dorman, C.J.1
Barr, G.C.2
Ní Bhriain, N.3
Higgins, C.F.4
-
28
-
-
0025342874
-
DNA supercoiling and the environmental regulation of virulence gene expression in Shigella flexneri
-
Dorman, C. J., Ní Bhriain, N. and Higgins, C. F. (1990) DNA supercoiling and the environmental regulation of virulence gene expression in Shigella flexneri. Nature, 344, 789-792.
-
(1990)
Nature
, vol.344
, pp. 789-792
-
-
Dorman, C.J.1
Ní Bhriain, N.2
Higgins, C.F.3
-
29
-
-
0027382142
-
The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium
-
Karem, K. and Foster, J. W. (1993) The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium. Mol. Microbiol., 10, 75-86.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 75-86
-
-
Karem, K.1
Foster, J.W.2
-
30
-
-
0037316190
-
A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli
-
Cheung, K. J., Badarinarayana, V., Selinger, D. W., Janse, D. and Church, G. M. (2003) A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli. Genome Res., 13, 206-215.
-
(2003)
Genome Res.
, vol.13
, pp. 206-215
-
-
Cheung, K.J.1
Badarinarayana, V.2
Selinger, D.W.3
Janse, D.4
Church, G.M.5
-
31
-
-
11344266685
-
Genome transcriptional response to loss of chromosomal supercoiling in Escherichia coli
-
Peter, B. J., Arsuaga, J., Breier, A. M., Khodursky, A. B., Brown, P. O. and Cozzarelli, N. R. (2004) Genome transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol., 5, R87.
-
(2004)
Genome Biol.
, vol.5
-
-
Peter, B.J.1
Arsuaga, J.2
Breier, A.M.3
Khodursky, A.B.4
Brown, P.O.5
Cozzarelli, N.R.6
-
32
-
-
33745612978
-
Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome
-
Blot, N., Mavathur, R., Geertz, M., Travers, A. and Muskhelishvili, G. (2006) Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome. EMBO Rep., 7, 710-715.
-
(2006)
EMBO Rep.
, vol.7
, pp. 710-715
-
-
Blot, N.1
Mavathur, R.2
Geertz, M.3
Travers, A.4
Muskhelishvili, G.5
-
34
-
-
4344716137
-
A global role for Fis in the transcriptional control of metabolic and type III secretion genes of Salmonella enterica serovar Typhimurium
-
Kelly, A., Goldberg, M. D., Carroll, R. K., Danino, V., Hinton, J. C. D. and Dorman, C. J. (2004) A global role for Fis in the transcriptional control of metabolic and type III secretion genes of Salmonella enterica serovar Typhimurium. Microbiology, 150, 2037-2053.
-
(2004)
Microbiology
, vol.150
, pp. 2037-2053
-
-
Kelly, A.1
Goldberg, M.D.2
Carroll, R.K.3
Danino, V.4
Hinton, J.C.D.5
Dorman, C.J.6
-
35
-
-
0035082155
-
DNA supercoiling and transcription in Escherichia coli: The FIS connection
-
Travers, A., Schneider, R. and Muskhelishvili, G. (2001) DNA supercoiling and transcription in Escherichia coli: The FIS connection. Biochimie, 83, 213-217.
-
(2001)
Biochimie
, vol.83
, pp. 213-217
-
-
Travers, A.1
Schneider, R.2
Muskhelishvili, G.3
-
36
-
-
3142588939
-
Buffering of stable RNA promoter activity against DNA relaxation requires a far upstream sequence
-
Rochman, M., Blot, N., Dyachenko, M., Glaser, G., Travers, A. and Muskhelishvili, G. (2004) Buffering of stable RNA promoter activity against DNA relaxation requires a far upstream sequence. Mol. Microbiol., 53, 143-152.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 143-152
-
-
Rochman, M.1
Blot, N.2
Dyachenko, M.3
Glaser, G.4
Travers, A.5
Muskhelishvili, G.6
-
37
-
-
0012690768
-
Transcription factor as a topological homeostat
-
Muskhelishvili, G. and Travers, A. (2003) Transcription factor as a topological homeostat. Front Biosci., 8, d279-285.
-
(2003)
Front Biosci.
, vol.8
-
-
Muskhelishvili, G.1
Travers, A.2
-
38
-
-
2442560235
-
H - NS: A universal regulator for a dynamic genome
-
Dorman, C. J. (2004) H - NS: a universal regulator for a dynamic genome. Nature Rev. Microbiol., 2, 391-400.
-
(2004)
Nature Rev. Microbiol.
, vol.2
, pp. 391-400
-
-
Dorman, C.J.1
-
39
-
-
0942268740
-
The virF promoter in Shigella: More than just a curved DNA stretch
-
Prosseda, G., Falconi, M., Giangrossi, M., Gualerzi, C. O., Micheli, G. and Colonna, B. (2004) The virF promoter in Shigella: more than just a curved DNA stretch. Mol. Microbiol., 51, 523-537.
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 523-537
-
-
Prosseda, G.1
Falconi, M.2
Giangrossi, M.3
Gualerzi, C.O.4
Micheli, G.5
Colonna, B.6
-
40
-
-
33746008173
-
Selective silencing of foreign DNA with low GC content by the H - NS protein in Salmonella
-
Navarre, W. W., Porwollik, S., Wang, Y., McClelland, M., Rosen, H., Libby, S. J. and Fang, F. C. (2006) Selective silencing of foreign DNA with low GC content by the H - NS protein in Salmonella. Science, 313, 236-238.
-
(2006)
Science
, vol.313
, pp. 236-238
-
-
Navarre, W.W.1
Porwollik, S.2
Wang, Y.3
McClelland, M.4
Rosen, H.5
Libby, S.J.6
Fang, F.C.7
-
41
-
-
33748055114
-
H - NS mediates the silencing of laterally acquired genes in bacteria
-
Aug 18
-
Lucchini, S., Rowley, G., Goldberg, M. D., Hurd, D., Harrison, M. and Hinton, J. C. D. (2006) H - NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog., Aug 18, 2(8).
-
(2006)
PLoS Pathog.
, vol.2
, Issue.8
-
-
Lucchini, S.1
Rowley, G.2
Goldberg, M.D.3
Hurd, D.4
Harrison, M.5
Hinton, J.C.D.6
-
42
-
-
0034703060
-
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
-
Arfin, S. M., Long, A. D., Ito, E. T., Tolleri, L., Riehle, M. M., Paegle, E. S. and Hatfield, G. W. (2000) Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J. Biol. Chem., 275, 29672-29684.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29672-29684
-
-
Arfin, S.M.1
Long, A.D.2
Ito, E.T.3
Tolleri, L.4
Riehle, M.M.5
Paegle, E.S.6
Hatfield, G.W.7
-
43
-
-
31844431848
-
The integration host factor (IHF) integrates stationary phase and virulence gene expression in Salmonella enterica serovar Typhimurium
-
Mangan, M. W., Lucchini, S., Danino, V., Ó Cróinín, T., Hinton, J. C. D. and Dorman, C. J. (2006) The integration host factor (IHF) integrates stationary phase and virulence gene expression in Salmonella enterica serovar Typhimurium. Mol. Microbiol., 59, 1831-1847.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1831-1847
-
-
Mangan, M.W.1
Lucchini, S.2
Danino, V.3
Ó Cróinín, T.4
Hinton, J.C.D.5
Dorman, C.J.6
-
44
-
-
0029833895
-
Effects of integration host factor and DNA supercoiling on transcription from the ilvPG promoter of Escherichia coli
-
Parekh, B. S., Sheridan, S. D. and Hatfield, G. W. (1996) Effects of integration host factor and DNA supercoiling on transcription from the ilvPG promoter of Escherichia coli. J. Biol. Chem., 271, 20258-20264.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 20258-20264
-
-
Parekh, B.S.1
Sheridan, S.D.2
Hatfield, G.W.3
-
45
-
-
3242875113
-
Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism
-
Opel, M. L., Aeling, K. A., Holmes, W. M., Johnson, R. C., Benham, C. J. and Hatfield G. W. (2004) Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism. Mol. Microbiol., 53, 665-674.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 665-674
-
-
Opel, M.L.1
Aeling, K.A.2
Holmes, W.M.3
Johnson, R.C.4
Benham, C.J.5
Hatfield, G.W.6
-
46
-
-
0025968977
-
DNA supercoiling and the environmental regulation of virulence gene expression in bacterial pathogens
-
Dorman, C. J. (1991) DNA supercoiling and the environmental regulation of virulence gene expression in bacterial pathogens. Infect. Immunol., 59, 745-749.
-
(1991)
Infect. Immunol.
, vol.59
, pp. 745-749
-
-
Dorman, C.J.1
-
47
-
-
33846526996
-
Virulence gene regulation in Shigella
-
In: Curtiss III, R., Ingraham, J. L., Kaper, J. B., Maloy, S., Neidhardt, F. C., Riley, M. M., Squires, C. J., Wanner, B. L. and Bock, A. (eds.), 3rd edn. EcoSal online. Posted 29th December, 2004 at American Society for Microbiology, Washington, D.C
-
Dorman, C. J. (2004) Virulence gene regulation in Shigella. In: Curtiss III, R., Ingraham, J. L., Kaper, J. B., Maloy, S., Neidhardt, F. C., Riley, M. M., Squires, C. J., Wanner, B. L. and Bock, A. (eds.), Escherichia coli and Salmonella: Cellular and Molecular Biology, 3rd edn. EcoSal online. Posted 29th December, 2004 at http://www.ecosal.org. American Society for Microbiology, Washington, D.C.
-
(2004)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
-
-
Dorman, C.J.1
-
48
-
-
13844255187
-
Hierarchical gene regulators adapt Salmonella enterica to its host milieus
-
Rhen, M. and Dorman, C. J. (2005) Hierarchical gene regulators adapt Salmonella enterica to its host milieus. Int. J. Med. Microbiol., 295, 487-502.
-
(2005)
Int. J. Med. Microbiol.
, vol.295
, pp. 487-502
-
-
Rhen, M.1
Dorman, C.J.2
-
49
-
-
33749988005
-
Roles for DNA supercoiling and the FIS protein in modulating expression of virulence genes during intracellular growth of Salmonella enterica serovar Typhimurium
-
Ó Cróinín, T., Carroll, R. K., Kelly, A. and Dorman, C. J. (2006) Roles for DNA supercoiling and the FIS protein in modulating expression of virulence genes during intracellular growth of Salmonella enterica serovar Typhimurium. Mol. Microbiol., 62, 869-882.
-
(2006)
Mol. Microbiol.
, vol.62
, pp. 869-882
-
-
Ó Cróinín, T.1
Carroll, R.K.2
Kelly, A.3
Dorman, C.J.4
|