-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike, H. (1974) A new look at the statistical model identification. IEEE Trans. Automat. Control 19: 716-723.
-
(1974)
IEEE Trans. Automat. Control
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S.F., Madden, L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0030988807
-
Developmental changes of enzymes involved in conversion of sucrose to hexose-phosphate during early tuberisation of potato
-
DOI 10.1007/s004250050122
-
Appeldoorn, N.J.G., de Bruijn, S.M., Koot-Gronsveld, E.A.M., Visser, R.G.F., Vreugdenhil, D. and Van Der Plas, L.H.W. (1997) Developmental changes of enzymes involved in conversion of sucrose to hexose-phosphate during early tuberisation of potato. Planta 202: 220-226. (Pubitemid 27243122)
-
(1997)
Planta
, vol.202
, Issue.2
, pp. 220-226
-
-
Appeldoorn, N.J.G.1
De Bruijn, S.M.2
Koot-Gronsveld, E.A.M.3
Visser, R.G.F.4
Vreugdenhil, D.5
Van Der Plas, L.H.W.6
-
4
-
-
58149307466
-
QuantPrime-a flexible tool for reliable high-throughput primer design for quantitative PCR
-
Arvidsson, S., Kwasniewski, M., Riano-Pachon, D.M. and Mueller-Roeber, B. (2008) QuantPrime-a flexible tool for reliable high-throughput primer design for quantitative PCR. BMC Bioinformatics 9: 465.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 465
-
-
Arvidsson, S.1
Kwasniewski, M.2
Riano-Pachon, D.M.3
Mueller-Roeber, B.4
-
5
-
-
0001635863
-
Evaluation of methods for determining internal gases in banana fruit
-
Banks, N.H. (1983) Evaluation of methods for determining internal gases in banana fruit. J. Exp. Bot. 34: 871-879.
-
(1983)
J. Exp. Bot
, vol.34
, pp. 871-879
-
-
Banks, N.H.1
-
6
-
-
65249164096
-
H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: Application to spatial metabolite analysis in melon
-
Biais, B., Allwood, J.W., Deborde, C., Xu, Y., Maucourt, M., Beauvoit, B. et al. (2009) H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon. Anal. Chem. 81: 2884-2894.
-
(2009)
Anal. Chem
, vol.81
, pp. 2884-2894
-
-
Biais, B.1
Allwood, J.W.2
Deborde, C.3
Xu, Y.4
Maucourt, M.5
Beauvoit, B.6
-
7
-
-
0041508877
-
A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers
-
DOI 10.1104/pp.103.022236
-
Bologa, K.L., Fernie, A.R., Leisse, A., Ehlers Loureiro, M. and Geigenberger, P. (2003) A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers. Plant Physiol. 132: 2058-2072. (Pubitemid 37024166)
-
(2003)
Plant Physiology
, vol.132
, Issue.4
, pp. 2058-2072
-
-
Bologa, K.L.1
Fernie, A.R.2
Leisse, A.3
Ehlers Loureiro, M.4
Geigenberger, P.5
-
8
-
-
36049029610
-
Low oxygen sensing and balancing in plant seeds: A role for nitric oxide
-
DOI 10.1111/j.1469-8137.2007.02226.x
-
Borisjuk, L., Macherel, D., Benamar, A., Wobus, U. and Rolletshek, H. (2007) Low oxygen sensing and balancing in plant seeds: a role for nitric oxide. New Phytol. 176: 813-823. (Pubitemid 350098813)
-
(2007)
New Phytologist
, vol.176
, Issue.4
, pp. 813-823
-
-
Borisjuk, L.1
Macherel, D.2
Benamar, A.3
Wobus, U.4
Rolletschek, H.5
-
9
-
-
12744276575
-
Isolation of a cDNA from potato with structural similarity to the AP2 gene superfamily
-
Campbell, M.A., Woodring, A. and Stidd, J. (1998) Isolation of a cDNA from potato with structural similarity to the AP2 gene superfamily. Plant Physiol. 117: 1127.
-
(1998)
Plant Physiol
, vol.117
, pp. 1127
-
-
Campbell, M.A.1
Woodring, A.2
Stidd, J.3
-
10
-
-
26844464130
-
Effects of relative humidity, oxygen, and carbon dioxide on initiation and early development of stolons and tubers
-
Cary, J.W. (1986) Effects of relative humidity, oxygen, and carbon dioxide on initiation and early development of stolons and tubers. Amer. J. Potato Res. 63: 619-627.
-
(1986)
Amer. J. Potato Res
, vol.63
, pp. 619-627
-
-
Cary, J.W.1
-
11
-
-
77957746239
-
Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species
-
Christianson, A.J., Llewellyn, D.J., Dennis, E.S. and Wilson, W.I. (2010) Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species. Plant Signal. Behav. 5: 1006-1009.
-
(2010)
Plant Signal. Behav.
, vol.5
, pp. 1006-1009
-
-
Christianson, A.J.1
Llewellyn, D.J.2
Dennis, E.S.3
Wilson, W.I.4
-
12
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis
-
DOI 10.1104/pp.105.063743
-
Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K. and Scheible, W.R. (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17. (Pubitemid 43951587)
-
(2005)
Plant Physiology
, vol.139
, Issue.1
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.-R.5
-
13
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
D'Haeseleer, P., Liang, S. and Somogyi, R. (2000) Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics 16: 707.
-
(2000)
Bioinformatics
, vol.16
, pp. 707
-
-
D'Haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
14
-
-
0001885544
-
Mining the gene expression matrix: Inferring gene relationships from large-scale gene expression data
-
Edited by Holcombe, M. and Paton., R. Plenum Press, New York
-
D'Haeseleer, P., Wen, X., Fuhrman, S. and Somogyi, R. (1997) Mining the gene expression matrix: inferring gene relationships from large-scale gene expression data. In Information Processing in Cells and Tissues. Edited by Holcombe, M. and Paton., R. pp. 203-212. Plenum Press, New York.
-
(1997)
Information Processing in Cells and Tissues
, pp. 203-212
-
-
D'Haeseleer, P.1
Wen, X.2
Fuhrman, S.3
Somogyi, R.4
-
15
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl. Acids Res. 32: 1792-1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
3242708140
-
Least angle regression
-
DOI 10.1214/009053604000000067
-
Efron, T., Hastie, T., Johnstone, I. and Tibshirani, R. (2004) Least angle regression. Ann. Statist. 32: 407-499. (Pubitemid 41250302)
-
(2004)
Annals of Statistics
, vol.32
, Issue.2
, pp. 407-499
-
-
Efron, B.1
Hastie, T.2
Johnstone, I.3
Tibshirani, R.4
Ishwaran, H.5
Knight, K.6
Loubes, J.-M.7
Massart, P.8
Madigan, D.9
Ridgeway, G.10
Rosset, S.11
Zhu, J.I.12
Stine, R.A.13
Turlach, B.A.14
Weisberg, S.15
Hastie, T.16
Johnstone, I.17
Tibshirani, R.18
-
17
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
18
-
-
0036787226
-
Altered metabolic fluxes result from shifts in metabolite levels in sucrose phosphorylase-expressing potato tubers
-
Fernie, A.R., Tiessen, A., Stitt, M., Willmitzer, L. and Geigenberger, P. (2002) Altered metabolic fluxes result from shifts in metabolite levels in sucrose phosphorylase-expressing potato tubers. Plant Cell Environ. 25: 1219-1232.
-
(2002)
Plant Cell Environ
, vol.25
, pp. 1219-1232
-
-
Fernie, A.R.1
Tiessen, A.2
Stitt, M.3
Willmitzer, L.4
Geigenberger, P.5
-
19
-
-
77249131395
-
Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis
-
Ferreira, S.J., Senninh, M., Sonnewald, S., Kessling, P., Goldstein, R. and Sonnewald, U. (2010) Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis. BMC Genomics 11: 93.
-
(2010)
BMC Genomics
, vol.11
, pp. 93
-
-
Ferreira, S.J.1
Senninh, M.2
Sonnewald, S.3
Kessling, P.4
Goldstein, R.5
Sonnewald, U.6
-
20
-
-
75149117810
-
Hypoxia inducible factors regulate pluripo-tency and proliferation in human embryonic stem cells cultured at reduced oxygen tensions
-
Forristal, C.E., Wright, K.L., Hanley, N.A., Oreffo, R.O. and Houghton, F.D. (2010) Hypoxia inducible factors regulate pluripo-tency and proliferation in human embryonic stem cells cultured at reduced oxygen tensions. Reproduction 139: 85-97.
-
(2010)
Reproduction
, vol.139
, pp. 85-97
-
-
Forristal, C.E.1
Wright, K.L.2
Hanley, N.A.3
Oreffo, R.O.4
Houghton, F.D.5
-
21
-
-
0029360594
-
Sink-and vascular-associated sucrose synthase functions are encoded by different gene classes in potato
-
Fu, H. and Park, W.D. (1995) Sink-and vascular-associated sucrose synthase functions are encoded by different gene classes in potato. Plant Cell 7: 1369-1385.
-
(1995)
Plant Cell
, vol.7
, pp. 1369-1385
-
-
Fu, H.1
Park, W.D.2
-
22
-
-
0029360788
-
0flanking sequences and the leader intron
-
Fu, H., Kim, S.Y. and Park, W.D. (1995) High-leve1 tuber expression and sucrose inducibility of a potato Sus4 sucrose synthase gene require 50 and 30 flanking sequences and the leader intron. Plant Cell 7: 1387-1394.
-
(1995)
Plant Cell
, vol.7
, pp. 1387-1394
-
-
Fu, H.1
Kim, S.Y.2
Park, W.D.3
-
23
-
-
55949104210
-
Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
-
Fukao, T. and Bailey-Serres, J. (2008) Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proc. Natl Acad. Sci. USA 105: 16814-16819.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 16814-16819
-
-
Fukao, T.1
Bailey-Serres, J.2
-
24
-
-
33747496374
-
A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice
-
DOI 10.1105/tpc.106.043000
-
Fukao, T., Xu, K., Ronald, P.C. and Bailey-Serres, J. (2006) A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. Plant Cell 18: 2021-2034. (Pubitemid 44260194)
-
(2006)
Plant Cell
, vol.18
, Issue.8
, pp. 2021-2034
-
-
Fukao, T.1
Xu, K.2
Ronald, P.C.3
Bailey-Serres, J.4
-
25
-
-
0037795742
-
Response of plant metabolism to too little oxygen
-
DOI 10.1016/S1369-5266(03)00038-4
-
Geigenberger, P. (2003a) Response of plant metabolism to too little oxygen. Curr. Opin. Plant Biol. 6: 247-256. (Pubitemid 36704510)
-
(2003)
Current Opinion in Plant Biology
, vol.6
, Issue.3
, pp. 247-256
-
-
Geigenberger, P.1
-
26
-
-
0037241320
-
Regulation of sucrose to starch conversion in growing potato tubers
-
DOI 10.1093/jxb/erg074
-
Geigenberger, P. (2003b) Regulation of sucrose to starch conversion in growing potato tubers. J. Exp. Bot. 54: 457-465. (Pubitemid 36122041)
-
(2003)
Journal of Experimental Botany
, vol.54
, Issue.382
, pp. 457-465
-
-
Geigenberger, P.1
-
27
-
-
0033832777
-
Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers
-
Geigenberger, P., Fernie, A.R., Gibon, Y., Christ, M. and Stitt, M. (2000) Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Biol. Chem. 381: 723-740.
-
(2000)
Biol. Chem
, vol.381
, pp. 723-740
-
-
Geigenberger, P.1
Fernie, A.R.2
Gibon, Y.3
Christ, M.4
Stitt, M.5
-
28
-
-
69149109855
-
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water
-
Hattori, Y., Nagai, K., Furukawa, S., Song, S.J., Kawano, R., Sakakibara, H. et al. (2009) The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature 460: 1026-1030.
-
(2009)
Nature
, vol.460
, pp. 1026-1030
-
-
Hattori, Y.1
Nagai, K.2
Furukawa, S.3
Song, S.J.4
Kawano, R.5
Sakakibara, H.6
-
29
-
-
79954593092
-
Arabidopsis RAP2.2: An ethylene response transcription factor that is important for hypoxia survival
-
Hinz, M., Wilson, I.W., Yang, J., Buerstenbinder, K., Llewellyn, D., Dennis, E.S. et al. (2010) Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival. Plant Physiol. 144: 218-231.
-
(2010)
Plant Physiol
, vol.144
, pp. 218-231
-
-
Hinz, M.1
Wilson, I.W.2
Yang, J.3
Buerstenbinder, K.4
Llewellyn, D.5
Dennis, E.S.6
-
30
-
-
0345275236
-
Soil oxygen and moisture in relation to Russet Burbank potato yield and quality
-
Holder, C.B. and Cary, J.W. (1984) Soil oxygen and moisture in relation to Russet Burbank potato yield and quality. Amer. J. Potato Res. 61: 67-75.
-
(1984)
Amer. J. Potato Res
, vol.61
, pp. 67-75
-
-
Holder, C.B.1
Cary, J.W.2
-
31
-
-
34547560275
-
WoLF PSORT: Protein localization predictor
-
Horton, P., Park, K.J., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C.J. et al. (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res. 35: W585-W587.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
-
32
-
-
48749092333
-
Ectopic expression of pepper CaPF1 in potato enhances multiple stresses tolerance and delays initiation of in vitro tuberization
-
Jung, W.Y., Jae, H.J., Doil, C., So, Y.Y., Joung, H. and Hyun, S.K. (2008) Ectopic expression of pepper CaPF1 in potato enhances multiple stresses tolerance and delays initiation of in vitro tuberization. Planta 228: 701-708.
-
(2008)
Planta
, vol.228
, pp. 701-708
-
-
Jung, W.Y.1
Jae, H.J.2
Doil, C.3
So, Y.Y.4
Joung, H.5
Hyun, S.K.6
-
33
-
-
52349121875
-
Genes driving potato tuber initiation and growth: Identification based on transcriptional changes using the POCI array
-
Kloosterman, B., De Koeyer, D., Griffiths, R., Flinn, B, Steuernagel, B., Scholz, U. et al. (2008) Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Funct. Integr. Genomics 8: 329-340.
-
(2008)
Funct. Integr. Genomics
, vol.8
, pp. 329-340
-
-
Kloosterman, B.1
De Koeyer, D.2
Griffiths, R.3
Flinn, B.4
Steuernagel, B.5
Scholz, U.6
-
34
-
-
35148821839
-
StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development
-
DOI 10.1111/j.1365-313X.2007.03245.x
-
Kloosterman, B., Navarro, C., Bijsterbosch, G., Lange, T., Prat, S., Visser, R.G. et al. (2007) StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development. Plant J. 52: 362-373. (Pubitemid 47537590)
-
(2007)
Plant Journal
, vol.52
, Issue.2
, pp. 362-373
-
-
Kloosterman, B.1
Navarro, C.2
Bijsterbosch, G.3
Lange, T.4
Prat, S.5
Visser, R.G.F.6
Bachem, C.W.B.7
-
35
-
-
34250643895
-
Transcript profiling of the anoxic rice coleoptile
-
DOI 10.1104/pp.106.093997
-
Lasanthi-Kudahettige, R., Magneschi, L., Loreti, E., Gonzali, S., Licausi, F., Novi, G. et al. (2007) Transcript profiling of the anoxic rice coleop-tile. Plant Physiol. 144: 218-231. (Pubitemid 46941626)
-
(2007)
Plant Physiology
, vol.144
, Issue.1
, pp. 218-231
-
-
Lasanthi-Kudahettige, R.1
Magneschi, L.2
Loreti, E.3
Gonzali, S.4
Licausi, F.5
Novi, G.6
Beretta, O.7
Vitulli, F.8
Alpi, A.9
Perata, P.10
-
36
-
-
77449150559
-
Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding
-
Lee, K.W., Chen, P.-W., Lu, C.-A., Chen, S., Ho, T.-H.D. and Yu, S.-M. (2009) Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding. Sci. Signal. 2: ra61.
-
(2009)
Sci. Signal
, vol.2
-
-
Lee, K.W.1
Chen, P.-W.2
Lu, C.-A.3
Chen, S.4
Ho, T.-H.D.5
Yu, S.-M.6
-
37
-
-
58149194624
-
SMART 6: Recent updates and new developments
-
Letunic, I., Doerks, T. and Bork, P. (2009) SMART 6: recent updates and new developments. Nucl. Acids Res. 37: D229-D232.
-
(2009)
Nucl. Acids Res
, vol.37
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
38
-
-
78650271190
-
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera
-
Licausi, F., Giorgi, F.M., Zenoni, S., Osti, F., Pezzotti, M. and Perata, P. (2010a) Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. BMC Genomics 11: 719.
-
(2010)
BMC Genomics
, vol.11
, pp. 719
-
-
Licausi, F.1
Giorgi, F.M.2
Zenoni, S.3
Osti, F.4
Pezzotti, M.5
Perata, P.6
-
39
-
-
77951988135
-
HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana
-
Licausi, F., Van Dongen, J.T., Giuntoli, B., Novi, G., Santaniello, A., Geigenberger, P. et al. (2010b) HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana. Plant J. 62: 302-315.
-
(2010)
Plant J
, vol.62
, pp. 302-315
-
-
Licausi, F.1
Van Dongen, J.T.2
Giuntoli, B.3
Novi, G.4
Santaniello, A.5
Geigenberger, P.6
-
40
-
-
33645232234
-
New challenges in biophotonics: Laser-based fluoroimmuno analysis and in vivo optical oxygen monitoring
-
Löhmannsröben, H.-G., Beck, M., Hildebrandt, N., Schmälzlin, E. and van Dongen, J.T. (2005) New challenges in biophotonics: laser-based fluoroimmuno analysis and in vivo optical oxygen monitoring. Proceedings SPIE 6157, 61570E.
-
(2005)
Proceedings SPIE
, vol.6157
-
-
Löhmannsröben, H.-G.1
Beck, M.2
Hildebrandt, N.3
Schmälzlin, E.4
Van Dongen, J.T.5
-
41
-
-
0000248856
-
Composition of gases in intercellular spaces of apples and potatoes
-
Magness, J.R. (1920) Composition of gases in intercellular spaces of apples and potatoes. Bot. Gaz. 70: 308-316.
-
(1920)
Bot. Gaz
, vol.70
, pp. 308-316
-
-
Magness, J.R.1
-
42
-
-
0025429255
-
Alcohol dehydro-genase gene expression in potato following elicitor and stress treatment
-
Matton, D.P., Constabel, P. and Brisson, N. (1990) Alcohol dehydro-genase gene expression in potato following elicitor and stress treatment. Plant Mol. Biol. 14: 775-783.
-
(1990)
Plant Mol. Biol
, vol.14
, pp. 775-783
-
-
Matton, D.P.1
Constabel, P.2
Brisson, N.3
-
43
-
-
0027137266
-
Changes of carbohydrates, metabolites and enzyme activities in potato tubers during development, and within a single tuber along a stolon-apex gradient
-
Merlo, L., Geigenberger, P., Hajirezaei, M. and Stitt, M. (1993) Changes of carbohydrates, metabolites and enzyme activities in potato tubers during development, and within a single tuber along a stolon-apex gradient. J. Plant Physiol. 142: 392-402. (Pubitemid 2002011)
-
(1993)
Journal of Plant Physiology
, vol.142
, Issue.4
, pp. 392-402
-
-
Merlo, L.1
Geigenberger, P.2
Hajirezaei, M.3
Stitt, M.4
-
44
-
-
0037267986
-
CIP353 encodes an AP2/ERF-domain protein in potato (Solanum tuberosum L.) and responds slowly to cold stress
-
DOI 10.1093/pcp/pcg004
-
Mine, T., Hiyoshi, T., Kasaoka, K. and Ohyama, A. (2003) CIP353 encodes an AP2/ERF-domain protein in potato (Solanum tubero-sum L.) and responds slowly to cold stress. Plant Cell Physiol. 44: 10-15. (Pubitemid 36198981)
-
(2003)
Plant and Cell Physiology
, vol.44
, Issue.1
, pp. 10-15
-
-
Mine, T.1
Hiyoshi, T.2
Kasaoka, K.3
Ohyama, A.4
-
45
-
-
77949535960
-
Cross-Kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific re sponses
-
Mustroph, A., Lee, S.C., Oosumi, T., Zanetti, M.A., Yang, H., Ma, K. et al. (2010) Cross-Kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific re sponses. Plant Physiol. 152: 1484-1500.
-
(2010)
Plant Physiol
, vol.152
, pp. 1484-1500
-
-
Mustroph, A.1
Lee, S.C.2
Oosumi, T.3
Zanetti, M.A.4
Yang, H.5
Ma, K.6
-
46
-
-
33646832415
-
Genome-wide analysis of the ERF gene family in arabidopsis and rice
-
DOI 10.1104/pp.105.073783
-
Nakano, T., Suzuki, K., Fujimura, T. and Shinshi, H. (2006) Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol. 140: 411-432. (Pubitemid 43956266)
-
(2006)
Plant Physiology
, vol.140
, Issue.2
, pp. 411-432
-
-
Nakano, T.1
Suzuki, K.2
Fujimura, T.3
Shinshi, H.4
-
47
-
-
79953034470
-
Comparative analysis between plant species of transcrip-tional and metabolic responses to hypoxia
-
Narsai, R., Rocha, M., Geigenberger, P., Whelan, J. and van Dongen, J.T. (2010) Comparative analysis between plant species of transcrip-tional and metabolic responses to hypoxia. New Phytol. 190: 472-487.
-
(2010)
New Phytol
, vol.190
, pp. 472-487
-
-
Narsai, R.1
Rocha, M.2
Geigenberger, P.3
Whelan, J.4
Van Dongen, J.T.5
-
48
-
-
27144456802
-
Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
-
DOI 10.1093/jxb/eri285
-
Nicot, N., Hausman, J.F., Hoffmann, L. and Evers, D. (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 56: 2907-2914. (Pubitemid 41507227)
-
(2005)
Journal of Experimental Botany
, vol.56
, Issue.421
, pp. 2907-2914
-
-
Nicot, N.1
Hausman, J.-F.2
Hoffmann, L.3
Evers, D.4
-
49
-
-
33947718967
-
Mutual regulation of Arabidopsis thaliana ethylene-responsive element binding protein and a plant floral homeotic gene, APETALA2
-
DOI 10.1093/aob/mcl265
-
Ogawa, T., Uchimiya, H. and Kawai-Yamada, M. (2007) Mutual regulation of Arabidopsis thaliana ethylene-responsive element binding protein and a plant floral homeotic gene, APETALA. Ann. Bot. 99: 239-244. (Pubitemid 47355907)
-
(2007)
Annals of Botany
, vol.99
, Issue.2
, pp. 239-244
-
-
Ogawa, T.1
Uchimiya, H.2
Kawai-Yamada, M.3
-
50
-
-
48549102479
-
Functional identification of Arabidopsis stress regulatory genes using the controlled cDNA overexpression system
-
DOI 10.1104/pp.108.116897
-
Papdi, C., Ábrahám, E., Joseph, M.P., Popescu, C., Koncz, C. and Szabados, L. (2008) Functional identification of Arabidopsis stress regulatory genes using the controlled cDNA overexpression system. Plant Physiol. 147: 528-542. (Pubitemid 352844299)
-
(2008)
Plant Physiology
, vol.147
, Issue.2
, pp. 528-542
-
-
Papdi, C.1
Abraham, E.2
Joseph, M.P.3
Popescu, C.4
Koncz, C.5
Szabados, L.6
-
51
-
-
58149204055
-
ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression
-
Parkinson, H., Kapushesky, M., Kolesnikov, N., Rustici, G., Shojatalab, M., Abeygunawardena, N. et al. (2009) ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res. 37: D868-D872.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Parkinson, H.1
Kapushesky, M.2
Kolesnikov, N.3
Rustici, G.4
Shojatalab, M.5
Abeygunawardena, N.6
-
52
-
-
79960917261
-
Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence-tolerance mechanism
-
Peña-Castro, J.M., van Zanten, M., Lee, S.C., Patel, M.R., Voesenek, L.A., Fukao, T. et al. (2011) Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence-tolerance mechanism. Plant J. 67: 434-446.
-
(2011)
Plant J.
, vol.67
, pp. 434-446
-
-
Peña-Castro, J.M.1
Van Zanten, M.2
Lee, S.C.3
Patel, M.R.4
Voesenek, L.A.5
Fukao, T.6
-
53
-
-
0000833650
-
Effect of anoxia on the induction of a-amylase in cereal seeds
-
Perata, P., Geshi, N., Yamaguchi, J. and Akazawa, T. (1993) Effect of anoxia on the induction of a-amylase in cereal seeds. Planta 191: 402-408.
-
(1993)
Planta
, vol.191
, pp. 402-408
-
-
Perata, P.1
Geshi, N.2
Yamaguchi, J.3
Akazawa, T.4
-
54
-
-
33745947900
-
Seasonal control of tuberization in potato: Conserved elements with the flowering response
-
DOI 10.1146/annurev.arplant.57.032905.105224
-
Rodríguez-Falcón, M., Bou, J. and Prat, S. (2006) Seasonal control of tuberization in potato: conserved elements with the flowering response. Annu. Rev. Plant Biol. 57: 151-180. (Pubitemid 44061022)
-
(2006)
Annual Review of Plant Biology
, vol.57
, pp. 151-180
-
-
Rodriguez-Falcon, M.1
Bou, J.2
Prat, S.3
-
55
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
56
-
-
23244447245
-
An optical multifrequency phase-modulation method using microbeads for measuring intracellular oxygen concentrations in plants
-
DOI 10.1529/biophysj.105.063453
-
Schmälzlin, E., van Dongen, J.T., Klimant, I., Marmodée, B., Steup, M., Fisahn, J. et al. (2005) An optical multifrequency phase-modulation method using microbeads for measuring intracellular oxygen concentrations in plants. Biophys. J. 89: 1339-1345. (Pubitemid 41099015)
-
(2005)
Biophysical Journal
, vol.89
, Issue.2
, pp. 1339-1345
-
-
Schmalzlin, E.1
Van Dongen, J.T.2
Klimant, I.3
Marmodee, B.4
Steup, M.5
Fisahn, J.6
Geigenberger, P.7
Lohmannsroben, H.-G.8
-
57
-
-
0034486632
-
Sugar-induced signal transduction in plants
-
Smeekens, S. (2000) Sugar-induced signal transduction in plants. Plant Mol. Biol. 51: 49-81.
-
(2000)
Plant Mol. Biol
, vol.51
, pp. 49-81
-
-
Smeekens, S.1
-
58
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): Gene structure and function annotation
-
Swarbreck, D., Wilks, C., Lamesch, P., Berardini, T.Z., Garcia-Hernandez, M., Foerster, H. et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 36: D1009-D10014.
-
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
-
59
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
DOI 10.1093/molbev/msm092
-
Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. (Pubitemid 47236692)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
60
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani, R. (1996) Regression shrinkage and selection via the lasso. J. R. Statist. Soc. B 58: 267-288.
-
(1996)
J. R. Statist. Soc B
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
61
-
-
70449115789
-
Coexpression tools for plant biology: Opportunities for hypothesis generation and caveats
-
Usadel, B., Obayashi, T., Mutwil, M., Giorgi, F.M., Bassel, G.W., Tanimoto, M. et al. (2009a) Coexpression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ. 32: 1633-1651.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
-
62
-
-
68249092895
-
A guide to using MapMan to visualize and compare Omics data in plants: A case study in the crop species, maize
-
Usadel, B., Poree, F., Nagel, A., Lohse, M., Czedik-Eysenberg, A. and Stitt, M. (2009b) A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, maize. Plant Cell Environ. 32: 1211-1229.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1211-1229
-
-
Usadel, B.1
Poree, F.2
Nagel, A.3
Lohse, M.4
Czedik-Eysenberg, A.5
Stitt, M.6
-
63
-
-
3543022128
-
Phloem import and storage metabolism are highly coordinated by the low oxygen concentrations within developing wheat seeds
-
DOI 10.1104/pp.104.040980
-
van Dongen, J.T., Roeb, G.W., Dautzenberg, M., Froehlich, A., Vigeolas, H., Minchin, P.E.H. et al. (2004) Phloem import and storage metabolism are highly coordinated by the low oxygen concentrations within developing wheat seeds. Plant Physiol. 135: 1809-1821. (Pubitemid 39009421)
-
(2004)
Plant Physiology
, vol.135
, Issue.3
, pp. 1809-1821
-
-
Van Dongen, J.T.1
Roeb, G.W.2
Dautzenberg, M.3
Froehlich, A.4
Vigeolas, H.5
Minchin, P.E.H.6
Geigenberger, P.7
-
64
-
-
0344942509
-
Phloem metabolism and function have to cope with low internal oxygen
-
DOI 10.1104/pp.102.017202
-
van Dongen, J.T., Schurr, U., Pfister, M. and Geigenberger, P. (2003) Phloem metabolism and function have to cope with low internal oxygen. Plant Physiol. 131: 1529-1543. (Pubitemid 36463583)
-
(2003)
Plant Physiology
, vol.131
, Issue.4
, pp. 1529-1543
-
-
Van Dongen, J.T.1
Schurr, U.2
Pfister, M.3
Geigenberger, P.4
-
65
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse, A.M., Procter, J.B., Martin, D.M.A., Clamp, M. and Barton, G.J. (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
66
-
-
0031000565
-
Sugar import and metabolism during seed development
-
DOI 10.1016/S1360-1385(97)01030-3
-
Weber, H., Borisjuk, L. and Wobus, U. (1997) Sugar import and metabolism during seed development. Trends Plant Sci. 2: 169-174. (Pubitemid 27186089)
-
(1997)
Trends in Plant Science
, vol.2
, Issue.5
, pp. 169-174
-
-
Weber, H.1
Borisjuk, L.2
Wobus, U.3
-
67
-
-
33747035582
-
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
-
DOI 10.1038/nature04920, PII NATURE04920
-
Xu, K., Xu, X., Fukao, T., Canlas, P., Maghirang-Rodriguez, R., Heuer, S. et al. (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442: 705-708. (Pubitemid 44215327)
-
(2006)
Nature
, vol.442
, Issue.7103
, pp. 705-708
-
-
Xu, K.1
Xu, X.2
Fukao, T.3
Canlas, P.4
Maghirang-Rodriguez, R.5
Heuer, S.6
Ismail, A.M.7
Bailey-Serres, J.8
Ronald, P.C.9
Mackill, D.J.10
-
68
-
-
0001619749
-
The role of gibberellin, abscisic acid, and sucrose in the regulation of potato tuber formation in vitro
-
Xu, X., van Lammeren, A.A.M., Vermeer, E. and Vreugdenhil, D. (1998) The role of gibberellin, abscisic acid, and sucrose in the regulation of potato tuber formation in vitro. Plant Physiol. 117: 575-584. (Pubitemid 128652830)
-
(1998)
Plant Physiology
, vol.117
, Issue.2
, pp. 575-584
-
-
Xu, X.1
Van Lammeren, A.A.M.2
Vermeer, E.3
Vreugdenhil, D.4
-
69
-
-
48749092333
-
Ectopic expression of pepper CaPF1 in potato enhances nultiple stresses tolerance and delays initiation of in vitro tuberization
-
Youm, J.W., Jeon, J.H., Choi, D., Yi, S.Y., Joung, H. and Kim, H.S. (2008) Ectopic expression of pepper CaPF1 in potato enhances nultiple stresses tolerance and delays initiation of in vitro tuberization. Planta 228: 701-708.
-
(2008)
Planta
, vol.228
, pp. 701-708
-
-
Youm, J.W.1
Jeon, J.H.2
Choi, D.3
Yi, S.Y.4
Joung, H.5
Kim, H.S.6
-
70
-
-
0001895697
-
Evolutionary dvergence and convergence in proteins
-
Edited by Bryson, W. and Vogel, H.J. Academic Press, New York
-
Zuckerlandl, E. and Pauling, L. (1965) Evolutionary dvergence and convergence in proteins. In Evolving Genes and Protein. Edited by Bryson, W. and Vogel, H.J. pp. 97-166. Academic Press, New York.
-
(1965)
Evolving Genes and Protein
, pp. 97-166
-
-
Zuckerlandl, E.1
Pauling, L.2
|