-
1
-
-
79959838081
-
Integrated Genomic Analyses of Ovarian Carcinoma
-
TCGA
-
TCGA (2011) Integrated Genomic Analyses of Ovarian Carcinoma. Nature 474: 609-615.
-
(2011)
Nature
, vol.474
, pp. 609-615
-
-
-
2
-
-
33947512381
-
An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer
-
Dressman HK, Berchuck A, Chan G, Zhai J, Bild A, et al. (2007) An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer. J Clin Oncol 25: 517-525.
-
(2007)
J Clin Oncol
, vol.25
, pp. 517-525
-
-
Dressman, H.K.1
Berchuck, A.2
Chan, G.3
Zhai, J.4
Bild, A.5
-
3
-
-
77950526081
-
Gene expression profile for predicting survival in advanced-stage serous ovarian cancer across two independent datasets
-
Yoshihara K, Tajima A, Yahata T, Kodama S, Fujiwara H, et al. (2010) Gene expression profile for predicting survival in advanced-stage serous ovarian cancer across two independent datasets. PLoS One 5: e9615.
-
(2010)
PLoS One
, vol.5
-
-
Yoshihara, K.1
Tajima, A.2
Yahata, T.3
Kodama, S.4
Fujiwara, H.5
-
4
-
-
48549092983
-
A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer
-
Bonome T, Levine DA, Shih J, Randonovich M, Pise-Masison CA, et al. (2008) A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer. Cancer Res 68: 5478-5486.
-
(2008)
Cancer Res
, vol.68
, pp. 5478-5486
-
-
Bonome, T.1
Levine, D.A.2
Shih, J.3
Randonovich, M.4
Pise-Masison, C.A.5
-
5
-
-
61449106520
-
Survival-related profile, pathways, and transcription factors in ovarian cancer
-
Crijns AP, Fehrmann RS, de Jong S, Gerbens F, Meersma GJ, et al. (2009) Survival-related profile, pathways, and transcription factors in ovarian cancer. PLoS Med 6: e24.
-
(2009)
PLoS Med
, vol.6
-
-
Crijns, A.P.1
Fehrmann, R.S.2
de Jong, S.3
Gerbens, F.4
Meersma, G.J.5
-
6
-
-
13444282534
-
Outcome signature genes in breast cancer: is there a unique set?
-
Ein-Dor L, Kela I, Getz G, Givol D, Domany E, (2005) Outcome signature genes in breast cancer: is there a unique set? Bioinformatics 21: 171-178.
-
(2005)
Bioinformatics
, vol.21
, pp. 171-178
-
-
Ein-Dor, L.1
Kela, I.2
Getz, G.3
Givol, D.4
Domany, E.5
-
7
-
-
16244401458
-
Regularization and variable selection via the elastic net
-
Zou H, Hastie T, (2005) Regularization and variable selection via the elastic net. J R Statist Soc B 67: 301-320.
-
(2005)
J R Statist Soc B
, vol.67
, pp. 301-320
-
-
Zou, H.1
Hastie, T.2
-
8
-
-
77950188189
-
Pathway analysis of gene lists associated with platinum-based chemotherapy resistance in ovarian cancer: the big picture
-
Helleman J, Smid M, Jansen MP, van der Burg ME, Berns EM, (2010) Pathway analysis of gene lists associated with platinum-based chemotherapy resistance in ovarian cancer: the big picture. Gynecol Oncol 117: 170-176.
-
(2010)
Gynecol Oncol
, vol.117
, pp. 170-176
-
-
Helleman, J.1
Smid, M.2
Jansen, M.P.3
van der Burg, M.E.4
Berns, E.M.5
-
9
-
-
20144389741
-
Gene expression profiles predict early relapse in ovarian cancer after platinum-paclitaxel chemotherapy
-
Hartmann LC, Lu KH, Linette GP, Cliby WA, Kalli KR, et al. (2005) Gene expression profiles predict early relapse in ovarian cancer after platinum-paclitaxel chemotherapy. Clin Cancer Res 11: 2149-2155.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 2149-2155
-
-
Hartmann, L.C.1
Lu, K.H.2
Linette, G.P.3
Cliby, W.A.4
Kalli, K.R.5
-
10
-
-
28344437416
-
Prediction of clinical outcome and biological characterization of neuroblastoma by expression profiling
-
Schramm A, Schulte JH, Klein-Hitpass L, Havers W, Sieverts H, et al. (2005) Prediction of clinical outcome and biological characterization of neuroblastoma by expression profiling. Oncogene 24: 7902-7912.
-
(2005)
Oncogene
, vol.24
, pp. 7902-7912
-
-
Schramm, A.1
Schulte, J.H.2
Klein-Hitpass, L.3
Havers, W.4
Sieverts, H.5
-
11
-
-
34547849507
-
L1-regularization path algorithm for generalized linear models
-
Park MY, Hastie T, (2007) L1-regularization path algorithm for generalized linear models. J R Statist Soc B 69: 659-677.
-
(2007)
J R Statist Soc B
, vol.69
, pp. 659-677
-
-
Park, M.Y.1
Hastie, T.2
-
12
-
-
84891477136
-
IPA Ingenuity Pathway Analysis
-
Available:. Accessed 2011 Sep 30
-
IPA Ingenuity Pathway Analysis. Available: http://www.ingenuity.com. Accessed 2011 Sep 30.
-
-
-
-
13
-
-
24044440971
-
Bingo: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
-
Maere S, Heymans K, Kuiper M, (2005) Bingo: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks. Human Molecular Genetics 21: 3448-3449.
-
(2005)
Human Molecular Genetics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
14
-
-
77956548953
-
Cytoscape Web: an interactive web-based network browser
-
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, et al. (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics 26: 2347-2348.
-
(2010)
Bioinformatics
, vol.26
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
-
15
-
-
77949446630
-
Automated network analysis identifies core pathways in glioblastoma
-
Cerami E, Demir E, Schultz N, Taylor BS, Sander C, (2010) Automated network analysis identifies core pathways in glioblastoma. PLoS One 5: e8918.
-
(2010)
PLoS One
, vol.5
-
-
Cerami, E.1
Demir, E.2
Schultz, N.3
Taylor, B.S.4
Sander, C.5
-
16
-
-
0029822055
-
Brca2 is coordinately regulated with Brca1 during proliferation and differentiation in mammary epithelial cells
-
Rajan JV, Wang M, Marquis ST, Chodosh LA, (1996) Brca2 is coordinately regulated with Brca1 during proliferation and differentiation in mammary epithelial cells. Proc Natl Acad Sci U S A 93: 13078-13083.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 13078-13083
-
-
Rajan, J.V.1
Wang, M.2
Marquis, S.T.3
Chodosh, L.A.4
-
17
-
-
41549112390
-
Global gene expression analysis of early response to chemotherapy treatment in ovarian cancer spheroids
-
L'Esperance S, Bachvarova M, Tetu B, Mes-Masson AM, Bachvarov D, (2008) Global gene expression analysis of early response to chemotherapy treatment in ovarian cancer spheroids. BMC Genomics 9: 99.
-
(2008)
BMC Genomics
, vol.9
, pp. 99
-
-
L'Esperance, S.1
Bachvarova, M.2
Tetu, B.3
Mes-Masson, A.M.4
Bachvarov, D.5
-
18
-
-
70350322692
-
Progesterone receptor membrane component-1 regulates the development and Cisplatin sensitivity of human ovarian tumors in athymic nude mice
-
Peluso JJ, Gawkowska A, Liu X, Shioda T, Pru JK, (2009) Progesterone receptor membrane component-1 regulates the development and Cisplatin sensitivity of human ovarian tumors in athymic nude mice. Endocrinology 150: 4846-4854.
-
(2009)
Endocrinology
, vol.150
, pp. 4846-4854
-
-
Peluso, J.J.1
Gawkowska, A.2
Liu, X.3
Shioda, T.4
Pru, J.K.5
-
19
-
-
80455122668
-
Transcriptional Analysis of Novel Hormone Receptors PGRMC1 and PGRMC2 as Potential Biomarkers of Breast Adenocarcinoma Staging
-
doi:10.1016/j.jss.2010.04.034
-
Causey MW, Huston LJ, Harold DM, Charaba CJ, Ippolito DL, et al. (2011) Transcriptional Analysis of Novel Hormone Receptors PGRMC1 and PGRMC2 as Potential Biomarkers of Breast Adenocarcinoma Staging. J Surg Res doi:10.1016/j.jss.2010.04.034.
-
(2011)
J Surg Res
-
-
Causey, M.W.1
Huston, L.J.2
Harold, D.M.3
Charaba, C.J.4
Ippolito, D.L.5
-
20
-
-
77952672714
-
Identification and functional analysis of genes which confer resistance to cisplatin in tumor cells
-
Wu ZZ, Lu HP, Chao CC, (2010) Identification and functional analysis of genes which confer resistance to cisplatin in tumor cells. Biochem Pharmacol 80 (2): 262-276.
-
(2010)
Biochem Pharmacol
, vol.80
, Issue.2
, pp. 262-276
-
-
Wu, Z.Z.1
Lu, H.P.2
Chao, C.C.3
-
21
-
-
33745280621
-
PIK3CA and TFRC located in 3q are new prognostic factors in esophageal squamous cell carcinoma
-
Wada S, Noguchi T, Takeno S, Kawahara K, (2006) PIK3CA and TFRC located in 3q are new prognostic factors in esophageal squamous cell carcinoma. Ann Surg Oncol 13: 961-966.
-
(2006)
Ann Surg Oncol
, vol.13
, pp. 961-966
-
-
Wada, S.1
Noguchi, T.2
Takeno, S.3
Kawahara, K.4
-
22
-
-
0042023468
-
Transport of glutathione conjugates and chemotherapeutic drugs by RLIP76 (RALBP1): a novel link between G-protein and tyrosine kinase signaling and drug resistance
-
Awasthi S, Singhal SS, Sharma R, Zimniak P, Awasthi YC, (2003) Transport of glutathione conjugates and chemotherapeutic drugs by RLIP76 (RALBP1): a novel link between G-protein and tyrosine kinase signaling and drug resistance. Int J Cancer 106: 635-646.
-
(2003)
Int J Cancer
, vol.106
, pp. 635-646
-
-
Awasthi, S.1
Singhal, S.S.2
Sharma, R.3
Zimniak, P.4
Awasthi, Y.C.5
-
23
-
-
70350574158
-
Characterizing DNA methylation patterns in pancreatic cancer genome
-
Tan AC, Jimeno A, Lin SH, Wheelhouse J, Chan F, et al. (2009) Characterizing DNA methylation patterns in pancreatic cancer genome. Mol Oncol 3: 425-438.
-
(2009)
Mol Oncol
, vol.3
, pp. 425-438
-
-
Tan, A.C.1
Jimeno, A.2
Lin, S.H.3
Wheelhouse, J.4
Chan, F.5
-
24
-
-
60849089645
-
Aberrant DNA methylation is a dominant mechanism in MDS progression to AML
-
Jiang Y, Dunbar A, Gondek LP, Mohan S, Rataul M, et al. (2009) Aberrant DNA methylation is a dominant mechanism in MDS progression to AML. Blood 113: 1315-1325.
-
(2009)
Blood
, vol.113
, pp. 1315-1325
-
-
Jiang, Y.1
Dunbar, A.2
Gondek, L.P.3
Mohan, S.4
Rataul, M.5
-
26
-
-
33745700179
-
Mutant p53 induces the GEF-H1 oncogene, a guanine nucleotide exchange factor-H1 for RhoA, resulting in accelerated cell proliferation in tumor cells
-
Mizuarai S, Yamanaka K, Kotani H, (2006) Mutant p53 induces the GEF-H1 oncogene, a guanine nucleotide exchange factor-H1 for RhoA, resulting in accelerated cell proliferation in tumor cells. Cancer Res 66: 6319-6326.
-
(2006)
Cancer Res
, vol.66
, pp. 6319-6326
-
-
Mizuarai, S.1
Yamanaka, K.2
Kotani, H.3
-
27
-
-
57449110397
-
Promoter methylation of ID4. A marker for recurrence-free survival in human breast cancer
-
Noetzel E, Veeck J, Horn F, Hartmann A, Knuchel R, et al. (2008) [Promoter methylation of ID4. A marker for recurrence-free survival in human breast cancer]. Pathologe 29 (Suppl 2): 319-327.
-
(2008)
Pathologe
, vol.29
, Issue.SUPPL. 2
, pp. 319-327
-
-
Noetzel, E.1
Veeck, J.2
Horn, F.3
Hartmann, A.4
Knuchel, R.5
-
28
-
-
80051745151
-
ID4: a new player in the cancer arena
-
Dell'Orso S, Ganci F, Strano S, Blandino G, Fontemaggi G, (2010) ID4: a new player in the cancer arena. Oncotarget 1: 48-58.
-
(2010)
Oncotarget
, vol.1
, pp. 48-58
-
-
Dell'Orso, S.1
Ganci, F.2
Strano, S.3
Blandino, G.4
Fontemaggi, G.5
-
29
-
-
0034602928
-
RING domains: master builders of molecular scaffolds?
-
Borden KL, (2000) RING domains: master builders of molecular scaffolds? J Mol Biol 295: 1103-1112.
-
(2000)
J Mol Biol
, vol.295
, pp. 1103-1112
-
-
Borden, K.L.1
-
30
-
-
0033961923
-
RING for destruction?
-
Freemont PS, (2000) RING for destruction? Curr Biol 10: R84-87.
-
(2000)
Curr Biol
, vol.10
-
-
Freemont, P.S.1
-
31
-
-
66149133630
-
CS1 promotes multiple myeloma cell adhesion, clonogenic growth, and tumorigenicity via c-maf-mediated interactions with bone marrow stromal cells
-
Tai YT, Soydan E, Song W, Fulciniti M, Kim K, et al. (2009) CS1 promotes multiple myeloma cell adhesion, clonogenic growth, and tumorigenicity via c-maf-mediated interactions with bone marrow stromal cells. Blood 113: 4309-4318.
-
(2009)
Blood
, vol.113
, pp. 4309-4318
-
-
Tai, Y.T.1
Soydan, E.2
Song, W.3
Fulciniti, M.4
Kim, K.5
-
32
-
-
38449107286
-
HOXA7 in epithelial ovarian cancer: interrelationships between differentiation and clinical features
-
Ota T, Gilks CB, Longacre T, Leung PC, Auersperg N, (2007) HOXA7 in epithelial ovarian cancer: interrelationships between differentiation and clinical features. Reprod Sci 14: 605-614.
-
(2007)
Reprod Sci
, vol.14
, pp. 605-614
-
-
Ota, T.1
Gilks, C.B.2
Longacre, T.3
Leung, P.C.4
Auersperg, N.5
-
33
-
-
70349973619
-
The combined expression of HOXA4 and MEIS1 is an independent prognostic factor in patients with AML
-
Zangenberg M, Grubach L, Aggerholm A, Silkjaer T, Juhl-Christensen C, et al. (2009) The combined expression of HOXA4 and MEIS1 is an independent prognostic factor in patients with AML. Eur J Haematol 83: 439-448.
-
(2009)
Eur J Haematol
, vol.83
, pp. 439-448
-
-
Zangenberg, M.1
Grubach, L.2
Aggerholm, A.3
Silkjaer, T.4
Juhl-Christensen, C.5
-
34
-
-
65449173255
-
Inhibition of cervical cancer cell growth through activation of upstream kinases of AMP-activated protein kinase
-
Yu SY, Chan DW, Liu VW, Ngan HY, (2009) Inhibition of cervical cancer cell growth through activation of upstream kinases of AMP-activated protein kinase. Tumour Biol 30: 80-85.
-
(2009)
Tumour Biol
, vol.30
, pp. 80-85
-
-
Yu, S.Y.1
Chan, D.W.2
Liu, V.W.3
Ngan, H.Y.4
-
35
-
-
79951755788
-
An evaluation of resampling methods for assessment of survival risk prediction in high-dimensional settings
-
Subramanian J, Simon R, (2010) An evaluation of resampling methods for assessment of survival risk prediction in high-dimensional settings. Statist Med 30: 642-653.
-
(2010)
Statist Med
, vol.30
, pp. 642-653
-
-
Subramanian, J.1
Simon, R.2
-
36
-
-
34548565944
-
Predicting survival from microarray data-a comparative study
-
Bovelstad HM, Nygard S, Storvold HL, Aldrin M, Borgan O, et al. (2007) Predicting survival from microarray data-a comparative study. Bioinformatics 23: 2080-2087.
-
(2007)
Bioinformatics
, vol.23
, pp. 2080-2087
-
-
Bovelstad, H.M.1
Nygard, S.2
Storvold, H.L.3
Aldrin, M.4
Borgan, O.5
-
37
-
-
0026506202
-
Prediction in Censored Survival Data: A comparison of the Proportional Hazards and Linear Regression Models
-
Heller G, Simonoff JS, (1992) Prediction in Censored Survival Data: A comparison of the Proportional Hazards and Linear Regression Models. Biometrics 48: 101-115.
-
(1992)
Biometrics
, vol.48
, pp. 101-115
-
-
Heller, G.1
Simonoff, J.S.2
-
38
-
-
0036789479
-
Nomogram for overall survival of patients with progressive metastatic prostate cancer after castration
-
Smaletz O, Scher HI, Small EJ, Verbel DA, McMillan A, et al. (2002) Nomogram for overall survival of patients with progressive metastatic prostate cancer after castration. J Clin Oncol 20: 3972-3982.
-
(2002)
J Clin Oncol
, vol.20
, pp. 3972-3982
-
-
Smaletz, O.1
Scher, H.I.2
Small, E.J.3
Verbel, D.A.4
McMillan, A.5
-
39
-
-
29344458751
-
Time to detectable metastatic disease in patients with rising prostate-specific antigen values following surgery or radiation therapy
-
Slovin SF, Wilton AS, Heller G, Scher HI, (2005) Time to detectable metastatic disease in patients with rising prostate-specific antigen values following surgery or radiation therapy. Clin Cancer Res 11: 8669-8673.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 8669-8673
-
-
Slovin, S.F.1
Wilton, A.S.2
Heller, G.3
Scher, H.I.4
-
40
-
-
0031015557
-
The lasso method for variable selection in the Cox model
-
Tibshirani R, (1997) The lasso method for variable selection in the Cox model. Stat Med 16: 385-395.
-
(1997)
Stat Med
, vol.16
, pp. 385-395
-
-
Tibshirani, R.1
-
41
-
-
27944450863
-
Concordance probability and discriminatory power in proportional hazards regression
-
GÖnen M, Heller G, (2005) Concordance probability and discriminatory power in proportional hazards regression. Biometrika 92: 965-970.
-
(2005)
Biometrika
, vol.92
, pp. 965-970
-
-
GÖnen, M.1
Heller, G.2
-
42
-
-
70449481151
-
A kernel-based integration of genome-wide data for clinical decision support
-
Daemen A, Gevaert O, Ojeda F, Debucquoy A, Suykens JA, et al. (2009) A kernel-based integration of genome-wide data for clinical decision support. Genome Med 1: 39.
-
(2009)
Genome Med
, vol.1
, pp. 39
-
-
Daemen, A.1
Gevaert, O.2
Ojeda, F.3
Debucquoy, A.4
Suykens, J.A.5
-
43
-
-
68249115586
-
Extensions of sparse canonical correlation analysis with applications to genomic data
-
Article28
-
Witten DM, Tibshirani RJ, (2009) Extensions of sparse canonical correlation analysis with applications to genomic data. Stat Appl Genet Mol Biol 8: Article28.
-
(2009)
Stat Appl Genet Mol Biol
, vol.8
-
-
Witten, D.M.1
Tibshirani, R.J.2
-
44
-
-
70449331456
-
Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis
-
Shen R, Olshen AB, Ladanyi M, (2009) Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25: 2906-2912.
-
(2009)
Bioinformatics
, vol.25
, pp. 2906-2912
-
-
Shen, R.1
Olshen, A.B.2
Ladanyi, M.3
-
45
-
-
0036100116
-
Learning gene functional classifications from multiple data types
-
Pavlidis P, Weston J, Cai J, Noble WS, (2002) Learning gene functional classifications from multiple data types. J Comput Biol 9: 401-411.
-
(2002)
J Comput Biol
, vol.9
, pp. 401-411
-
-
Pavlidis, P.1
Weston, J.2
Cai, J.3
Noble, W.S.4
|