-
1
-
-
19344375744
-
Semi-supervised methods to predict patient survival from gene expression data
-
Bair,E. and Tibshirani,R. (2004) Semi-supervised methods to predict patient survival from gene expression data. PLoS Biol., 2, E108.
-
(2004)
PLoS Biol.
, vol.2
-
-
Bair, E.1
Tibshirani, R.2
-
2
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
Beer,D.G., Kardia,S.L., Huang,C.C., Giordano,T.J., Levin,A.M., Misek,D.E., Lin,L., Chen,G., Gharib,T.G., Thomas,D.G. et al. (2002) Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat. Med., 8, 816-824.
-
(2002)
Nat. Med.
, vol.8
, pp. 816-824
-
-
Beer, D.G.1
Kardia, S.L.2
Huang, C.C.3
Giordano, T.J.4
Levin, A.M.5
Misek, D.E.6
Lin, L.7
Chen, G.8
Gharib, T.G.9
Thomas, D.G.10
-
3
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B, 57, 289-300.
-
(1995)
J. Roy. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
4
-
-
0034642307
-
Gene expression profiling of primary breast carcinomas using arrays of candidate genes
-
Bertucci,F., Houlgatte,R., Benziane,A., Granjeaud,S., Adelaide,J., Tagett,R., Loriod,B., Jacquemier,J., Viens,P., Jordan,B., Birnbaum,D. and Nguyen,C. (2000) Gene expression profiling of primary breast carcinomas using arrays of candidate genes. Hum. Mol. Genet. 9, 2981-2991.
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 2981-2991
-
-
Bertucci, F.1
Houlgatte, R.2
Benziane, A.3
Granjeaud, S.4
Adelaide, J.5
Tagett, R.6
Loriod, B.7
Jacquemier, J.8
Viens, P.9
Jordan, B.10
Birnbaum, D.11
Nguyen, C.12
-
5
-
-
0344873115
-
Comparison of medulloblastoma and normal neural transcriptomes identifies a restricted set of activated genes
-
Boon,K., Edwards,J.B., Siu,I.M., Olschner,D., Eberhart,C.G., Marra,M.A., Strausberg,R.L. and Riggins,G.J. (2003) Comparison of medulloblastoma and normal neural transcriptomes identifies a restricted set of activated genes. Oncogene, 22, 7687-7694.
-
(2003)
Oncogene
, vol.22
, pp. 7687-7694
-
-
Boon, K.1
Edwards, J.B.2
Siu, I.M.3
Olschner, D.4
Eberhart, C.G.5
Marra, M.A.6
Strausberg, R.L.7
Riggins, G.J.8
-
6
-
-
0242637268
-
Potential therapeutic strategies to interrupt insulin-like growth factor signaling in breast cancer
-
Byron,S.A. and Yee,D. (2003) Potential therapeutic strategies to interrupt insulin-like growth factor signaling in breast cancer. Semin. Oncol., 30, 125-132.
-
(2003)
Semin. Oncol.
, vol.30
, pp. 125-132
-
-
Byron, S.A.1
Yee, D.2
-
7
-
-
0042355174
-
Impact of the tumor microenvironment on host infiltrating cells and the efficacy of flt3-ligand combination immunotherapy evaluated in a treatment model of mouse prostate cancer
-
Ciavarra,R.P., Brown,R.R., Holterman,D.A., Garrett,M., Glass,W.F.,II, Wright,G.L.Jr, Schellhammer,P.F. and Somers,K.D. (2003) Impact of the tumor microenvironment on host infiltrating cells and the efficacy of flt3-ligand combination immunotherapy evaluated in a treatment model of mouse prostate cancer. Cancer Immunol. Immunother. 52, 535-545.
-
(2003)
Cancer Immunol. Immunother.
, vol.52
, pp. 535-545
-
-
Ciavarra, R.P.1
Brown, R.R.2
Holterman, D.A.3
Garrett, M.4
Glass II, W.F.5
Wright Jr., G.L.6
Schellhammer, P.F.7
Somers, K.D.8
-
8
-
-
0012333539
-
Expression profiling to predict outcome in breast cancer: The influence of sample selection
-
Gruvberger,S.K., Ringner,M., Eden,P., Borg,A., Ferno,M., Peterson,C. and Meltzer,P.S. (2003) Expression profiling to predict outcome in breast cancer: the influence of sample selection. Breast Cancer Res., 5, 23-26.
-
(2003)
Breast Cancer Res.
, vol.5
, pp. 23-26
-
-
Gruvberger, S.K.1
Ringner, M.2
Eden, P.3
Borg, A.4
Ferno, M.5
Peterson, C.6
Meltzer, P.S.7
-
9
-
-
0025174653
-
Strong association between c-myb and oestrogen-receptor expression in human breast cancer
-
Guerin,M., Sheng,Z.M., Andrieu,N. and Riou,G. (1990) Strong association between c-myb and oestrogen-receptor expression in human breast cancer. Oncogene, 5, 131-135.
-
(1990)
Oncogene
, vol.5
, pp. 131-135
-
-
Guerin, M.1
Sheng, Z.M.2
Andrieu, N.3
Riou, G.4
-
10
-
-
0033599317
-
Cloning of BRAK, a novel divergent CXC chemokine preferentially expressed in normal versus malignant cells
-
Hromas,R., Broxmeyer,H.E., Kim,C., Nakshatri,H., Christopherson,K.,II, Azam,M. and Hou,Y.H. (1999) Cloning of BRAK, a novel divergent CXC chemokine preferentially expressed in normal versus malignant cells. Biochem. Biophys. Res. Commun., 255, 703-706.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.255
, pp. 703-706
-
-
Hromas, R.1
Broxmeyer, H.E.2
Kim, C.3
Nakshatri, H.4
Christopherson II, K.5
Azam, M.6
Hou, Y.H.7
-
11
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes,T.R., Mao,M., Jones,A.R., Burchard,J., Marton,M.J., Shannon,K.W., Lefkowitz,S.M., Ziman,M., Schelter,J.M., Meyer,M.R. et al. (2001) Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol., 19, 342-347.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
-
12
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan,J., Wei,J.S., Ringner,M., Saal,L.H., Ladanyi,M., Westermann,F., Berthold,F., Schwab,M., Antonescu,C.R., Peterson,C. and Meltzer,P.S. (2001) Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat. Med., 7, 673-679.
-
(2001)
Nat. Med.
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, P.S.11
-
13
-
-
0344844477
-
Enhancement of Bik antitumor effect by Bik mutants
-
Li,Y.M., Wen,Y., Zhou,B.P., Kuo.H.P., Ding,Q. and Hung,M.C. (2003) Enhancement of Bik antitumor effect by Bik mutants. Cancer Res. 63, 7630-7633.
-
(2003)
Cancer Res.
, vol.63
, pp. 7630-7633
-
-
Li, Y.M.1
Wen, Y.2
Zhou, B.P.3
Kuo, H.P.4
Ding, Q.5
Hung, M.C.6
-
14
-
-
2342587416
-
Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes
-
Lossos,I.S., Czerwinski,D.K., Alizadeh,A.A., Wechser,M.A., Tibshirani,R., Botstein,D. and Levy,R. (2004) Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. N. Engl. J. Med., 350, 1828-1837.
-
(2004)
N. Engl. J. Med.
, vol.350
, pp. 1828-1837
-
-
Lossos, I.S.1
Czerwinski, D.K.2
Alizadeh, A.A.3
Wechser, M.A.4
Tibshirani, R.5
Botstein, D.6
Levy, R.7
-
15
-
-
0037974744
-
Inhibition of p53-induced apoptosis without affecting expression of p53-regulated genes
-
Lotem,J., Gal,H., Kama,R., Amariglio,N., Rechavi,G., Domany,E., Sachs,L. and Givol,D. (2003) Inhibition of p53-induced apoptosis without affecting expression of p53-regulated genes. Proc. Natl Acad. Sci. USA, 100, 6718-6723.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6718-6723
-
-
Lotem, J.1
Gal, H.2
Kama, R.3
Amariglio, N.4
Rechavi, G.5
Domany, E.6
Sachs, L.7
Givol, D.8
-
16
-
-
2342624566
-
Microarray reality checks in the context of a complex disease
-
Miklos,G.L. and Maleszka,R. (2004) Microarray reality checks in the context of a complex disease. Nat. Biotechnol., 22, 615-621.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 615-621
-
-
Miklos, G.L.1
Maleszka, R.2
-
17
-
-
0036956225
-
Partial least squares proportional hazard regression for application to DNA microarray survival data
-
Nguyen,D.V. and Rocke,D.M. (2002) Partial least squares proportional hazard regression for application to DNA microarray survival data. Bioinformatics, 18, 1625-1632.
-
(2002)
Bioinformatics
, vol.18
, pp. 1625-1632
-
-
Nguyen, D.V.1
Rocke, D.M.2
-
18
-
-
0033629383
-
Cell cycle regulation by the Cdc25 phosphatase family
-
Nilsson,I. and Hoffmann,I. (2000) Cell cycle regulation by the Cdc25 phosphatase family. Prog. Cell Cycle Res., 4, 107-114.
-
(2000)
Prog. Cell Cycle Res.
, vol.4
, pp. 107-114
-
-
Nilsson, I.1
Hoffmann, I.2
-
19
-
-
0037226593
-
A molecular signature of metastasis in primary solid tumors
-
Ramaswamy,S., Ross,K.N., Lander,E.S. and Golub,T.R. (2003) A molecular signature of metastasis in primary solid tumors. Nat. Genet. 33, 49-54.
-
(2003)
Nat. Genet.
, vol.33
, pp. 49-54
-
-
Ramaswamy, S.1
Ross, K.N.2
Lander, E.S.3
Golub, T.R.4
-
20
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald,A., Wright,G., Chan,W.C., Connors,J.M., Campo,E., Fisher,R.I., Gascoyne,R.D., Muller-Hermelink,H.K., Smeland,E.B., Giltnane,J.M. et al. (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N. Engl. J. Med., 346, 1937-1947.
-
(2002)
N. Engl. J. Med.
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
Fisher, R.I.6
Gascoyne, R.D.7
Muller-Hermelink, H.K.8
Smeland, E.B.9
Giltnane, J.M.10
-
21
-
-
0029741917
-
BIN1 is a novel MYC-interacting protein with features of a tumour suppressor
-
Sakamuro,D., Elliott,K.J., Wechsler-Reya,R. and Prendergast,G.C. (1996) BIN1 is a novel MYC-interacting protein with features of a tumour suppressor. Nat. Genet., 14, 69-77.
-
(1996)
Nat. Genet.
, vol.14
, pp. 69-77
-
-
Sakamuro, D.1
Elliott, K.J.2
Wechsler-Reya, R.3
Prendergast, G.C.4
-
22
-
-
0642275468
-
Alterations in cell cycle genes in early stage lung adenocarcinoma identified by expression profiling
-
Singhal,S., Amin,K.M., Kruklitis,R., DeLong,P., Friscia.M.E., Litzky,L.A., Putt,M.E., Kaiser,L.R. and Albelda,S.M. (2003) Alterations in cell cycle genes in early stage lung adenocarcinoma identified by expression profiling. Cancer Biol. Ther., 2, 291-298.
-
(2003)
Cancer Biol. Ther.
, vol.2
, pp. 291-298
-
-
Singhal, S.1
Amin, K.M.2
Kruklitis, R.3
DeLong, P.4
Friscia, M.E.5
Litzky, L.A.6
Putt, M.E.7
Kaiser, L.R.8
Albelda, S.M.9
-
23
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie,T., Perou,C.M., Tibshirani,R., Aas,T., Geisler,S., Johnsen,H., Hastie,T., Eisen,M.B., van de Rijn,M., Jeffrey,S.S. et al. (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl Acad. Sci. USA, 98, 10869-10874.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
van de Rijn, M.9
Jeffrey, S.S.10
-
24
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie,T., Tibshirani,R., Parker,J., Hastie,T., Marron,J.S., Nobel,A., Deng,S., Johnsen,H., Pesich,R., Geisler,S. et al. (2003) Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc. Natl Acad. Sci. USA, 100, 8418-8423.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8418-8423
-
-
Sorlie, T.1
Tibshirani, R.2
Parker, J.3
Hastie, T.4
Marron, J.S.5
Nobel, A.6
Deng, S.7
Johnsen, H.8
Pesich, R.9
Geisler, S.10
-
26
-
-
0033516551
-
ckshs expression is linked to cell proliferation in normal and malignant human lymphoid cells
-
Urbanowicz-Kachnowicz,I., Baghdassarian,N., Nakache,C., Gracia,D., Mekki,Y, Bryon,P.A. and Ffrench,M. (1999) ckshs expression is linked to cell proliferation in normal and malignant human lymphoid cells. Int. J. Cancer, 82, 98-104.
-
(1999)
Int. J. Cancer
, vol.82
, pp. 98-104
-
-
Urbanowicz-Kachnowicz, I.1
Baghdassarian, N.2
Nakache, C.3
Gracia, D.4
Mekki, Y.5
Bryon, P.A.6
Ffrench, M.7
-
27
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver,M.J., He,Y.D., van't Veer,L.J., Dai,H., Hart.A.A., Voskuil,D.W., Schreiber,G.J., Peterse,J.L., Roberts,C., Marton,M.J. et al. (2002) A gene-expression signature as a predictor of survival in breast cancer. N. Engl. J. Med., 347 1999-2009.
-
(2002)
N. Engl. J. Med.
, vol.347
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
-
28
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer,L.J., Dai,H., van de Vijver,M.J., He,Y.D., Hart,A.A., Mao,M., Peterse,H.L., van der Kooy,K., Marton,M.J., Witteveen,A.T. et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature, 415, 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
29
-
-
18644382388
-
The polycomb group protein EZH2 is involved in progression of prostate cancer
-
Varambally,S., Dhanasekaran,S.M., Zhou,M., Barrette,T.R., Kumar-Sinha,C., Sanda,M.G., Ghosh,D., Pienta,K.J., Sewalt,R.G., Otte,A.P., Rubin,M.A. and Chinnaiyan,A.M. (2002) The polycomb group protein EZH2 is involved in progression of prostate cancer. Nature, 419, 624-629.
-
(2002)
Nature
, vol.419
, pp. 624-629
-
-
Varambally, S.1
Dhanasekaran, S.M.2
Zhou, M.3
Barrette, T.R.4
Kumar-Sinha, C.5
Sanda, M.G.6
Ghosh, D.7
Pienta, K.J.8
Sewalt, R.G.9
Otte, A.P.10
Rubin, M.A.11
Chinnaiyan, A.M.12
-
30
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West,M., Blanchette,C., Dressman,H., Huang,E., Ishida,S., Spang,R., Zuzan,H., Olson,J.A.,Jr, Marks,J.R. and Nevins,J.R. (2001) Predicting the clinical status of human breast cancer by using gene expression profiles. Proc. Natl Acad. Sci. USA, 98, 11462-11467.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
Spang, R.6
Zuzan, H.7
Olson Jr., J.A.8
Marks, J.R.9
Nevins, J.R.10
-
31
-
-
0035192637
-
Subcellular localisation of cyclin B, Cdc2 and p21(WAF1/CIP1) in breast cancer. Association with prognosis
-
Winters,Z.E., Hunt,N.C., Bradburn,M.J., Royds,J.A., Turley,H., Harris,A.L. and Norbury,C.J. (2001) Subcellular localisation of cyclin B, Cdc2 and p21(WAF1/CIP1) in breast cancer. association with prognosis. Eur. J. Cancer, 37, 2405-2412.
-
(2001)
Eur. J. Cancer
, vol.37
, pp. 2405-2412
-
-
Winters, Z.E.1
Hunt, N.C.2
Bradburn, M.J.3
Royds, J.A.4
Turley, H.5
Harris, A.L.6
Norbury, C.J.7
-
32
-
-
0042855006
-
IGF-binding protein-4: Biochemical characteristics and functional consequences
-
Zhou,R., Diehl,D., Hoeflich,A., Lahm,H. and Wolf,E. (2003) IGF-binding protein-4: biochemical characteristics and functional consequences. J. Endocrinol., 178, 177-193.
-
(2003)
J. Endocrinol.
, vol.178
, pp. 177-193
-
-
Zhou, R.1
Diehl, D.2
Hoeflich, A.3
Lahm, H.4
Wolf, E.5
|