Diversification in Adelomyia hummingbirds follows Andean uplift

Molecular Ecology

Volumn 20, Issue 21, 2011, Pages 4564-4576

  Chaves, Jaime A ^a   Weir, Jason T ^b   Smith, Thomas B ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF TORONTO   (Canada)

Author keywords

Adelomyia; Andean uplift; hummingbirds; speciation

Indexed keywords

ANIMAL; ARTICLE; BIRD; CLASSIFICATION; EVOLUTION; GENETICS; PHYLOGENY; SOUTH AMERICA; SPECIES DIFFERENTIATION;

ANIMALS; BIOLOGICAL EVOLUTION; BIRDS; GENETIC SPECIATION; PHYLOGENY; SOUTH AMERICA;

ADELOMYIA; TROCHILIDAE;

EID: 80054822241     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05304.x     Document Type: Article

References (82)

1. Bates J, Zink RM, (1994) Evolution into the Andes: molecular evidence for species relationships in the genus Leptopogon. The Auk, 111, 507-515. (Pubitemid 2154105)
2. Bleiweiss R, (1998) Origins of hummingbird faunas. Biological Journal of the Linnean Society, 65, 77-97.
3. Bonaccorso E, (2009) Historical biogeography and speciation in the Neotropical highlands: molecular phylogenetics of the jay genus Cyanolyca. Molecular Phylogenetics and Evolution, 50, 618-632.
4. Brumfield RT, Capparella AP, (1996) Historical diversification of birds in northwestern South America: a molecular perspective on the role of vicariant events. Evolution, 50, 1607-1624.
5. Brumfield RT, Edwards SV, (2007) Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution, 61, 346-367. (Pubitemid 46411620)
6. Buermann W, Saatchi S, Smith TB, et al. (2008) Predicting species distributions across the Amazonian and Andean regions using remote sensing. Journal of Biogeography, 35, 1160-1176. (Pubitemid 351841695)
7. Cadena CD, Klicka J, Ricklefs RE, (2007) Evolutionary differentiation in the Neotropical montane region: molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Molecular Phylogenetics and Evolution, 44, 993-1016. (Pubitemid 47263561)
8. Chaves JA, Smith TB, (2011) Evolutionary patterns of diversification in the Andean hummingbird genus Adelomyia. Molecular Phylogenetics and Evolution, 60, 207-218.
9. Chaves JA, Pollinger J, Smith TB, LeBuhn G, (2007) The role of geography and ecology in shaping the phylogeography of the speckled hummingbird (Adelomyia melanogenys) in Ecuador. Molecular Phylogenetics and Evolution, 43, 795-807. (Pubitemid 46777389)
10. Chesser RT, (2000) Evolution in the high Andes: the phylogenetics of Muscisaxicola ground-tyrants. Molecular Phylogenetics and Evolution, 15, 369-380. (Pubitemid 30416512)
11. Chesser RT, Zink RM, (1994) Modes of speciation in birds: a test of Lynch's method. Evolution, 48, 490-497. (Pubitemid 2160680)
12. Cooper MA, Addison FT, Alvarez R, et al. (1995) Basin development and tectonic history of the Llanos Basin, Eastern Cordillera, and Middle Magdalena Valley, Colombia. The American Association of Petroleum Geologists Bulletin, 79, 1421-1443. (Pubitemid 26458238)
13. Cracraft J, (1985) Historical biogeography and patterns of differentiation within the South American avifauna: areas of endemism. Neotropical Ornithology, 36, 49-84.
14. Díaz de Gamero ML, (1977) Estratigrafía y micropaleontología del Oligoceno y Mioceno inferior del centro de la Cuenca del Falcõn, Venezuela. GEOS, 22, 3-60.
15. Dickinson E, (2003) The Howard & Moore complete checklist of the birds of the world. 3rd edition. Princeton University Press, Princeton, NJ.
16. Dingle C, Lovette IJ, Canaday C, Smith TB, (2006) Elevational zonation and the phylogenetic relationships of the Henicorhina wood-wrens. The Auk, 1232, 119-134. (Pubitemid 43221505)
17. Doan TM, (2003) A south-to-north biogeographic hypothesis for Andean speciation: evidence from lizard genus Proctoporus (Reptilia, Gymnophthalmidae). Journal of Biogeography, 30, 361-374. (Pubitemid 36409172)
18. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
19. van den Elzen R, Guillen J, Ruiz-del-Valle V, et al. (2001) Both morphological and molecular characters support speciation of South American siskins by sexual selection. Cellular and Molecular Life Sciences, 58, 2117-2128. (Pubitemid 34016980)
20. Excoffier L, Smouse P, (1994) Using allele frequencies and geographic subdivision to reconstruct gene genealogies within a species: molecular variance parsimony. Genetics, 136, 343-359. (Pubitemid 24016698)
21. Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
22. Felsenstein J, (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution, 17, 368-376. (Pubitemid 11016207)
23. Fjeldsà J, (1994) Geographical patterns for relict and young species of birds in Africa and South America and implications for conservation priorities. Biodiversity and Conservation, 3, 207-226. (Pubitemid 2073551)
24. Fjeldsà J, Lambin E, Mertens B, (1999) Correlation between endemism and local ecoclimatic stability documented by comparing Andean bird distributions and remotely sensed land surface data. Ecography, 22, 63-78. (Pubitemid 29139186)
25. Fu XY, (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
26. García-Moreno J, Fjeldsà J, (2000) Chronology and mode of speciation in the Andean avifauna. In: Isolated Vertebrate Communities in the Tropics (ed., Rheinwald G,), pp. 25-46. Proceedings of the 4th International Symposium of Zoologisches Forschungsinstitut und Museum A. Koenig, Bonn, Germany.
27. García-Moreno J, Arctander P, Fjeldsà J, (1999a) Strong diversification at the treeline among Metallura hummingbirds. The Auk, 116, 702-711. (Pubitemid 29375467)
28. García-Moreno J, Arctander P, Fjeldsà J, (1999b) A case of rapid diversification in the Neotropics: phylogenetic relationships among Cranioleuca spinetails (Aves, Furnariidae). Molecular Phylogenetics and Evolution, 12, 273-281. (Pubitemid 129499307)
29. Garzione CN, Hoke GD, Libarkin JC, et al. (2008) Rise of the Andes. Science, 320, 1304-1307. (Pubitemid 351929459)
30. Goldman N, Anderson JP, Rodrigo AG, (2000) Likelihood-based tests of topologies in phylogenetics. Systematic Biology, 49, 652-670. (Pubitemid 33213083)
31. Graham CH, Ron SR, Santos JC, Schneider CJ, Moritz C, (2004) Integrating phylogenetics and environmental niche models to explore speciation mechanisms in Dendrobatid frogs. Evolution, 58, 1781-1793. (Pubitemid 39151508)
32. Graham CH, Silva N, Velásquez-Tibatá J, (2010) Evaluating the potential causes of range limits of birds of the Colombian Andes. Journal of Biogeography, 37, 1863-1875.
33. Graves GR, (1985) Elevational correlates of speciation and intraspecific geographic variation in plumage in Andean forest birds. The Auk, 102, 556-579.
34. Graves GR, (1988) Linearity of geographic range and its possible effect on the population structure of Andean birds. The Auk, 105, 47-52.
35. Gregory-Wodzicki KM, (2000) Uplift history of the Central and Northern Andes: a review. Geological Society of America Bulletin, 112, 1091-1105. (Pubitemid 32832321)
36. van der Hammen T, (1989) History of the montane forests of the northern Andes. Plant Systematics and Evolution, 162, 109-114.
37. Harris AJ, Xiang Q-Y, (2009) Estimating ancestral distributions of lineages with uncertain sister groups: a statistical approach to Dispersal-Vicariance Analysis and a case using Aesculus L. (Sapindaceae) including fossils. Journal of Systematics and Evolution, 47, 349-368.
38. Hartley A, (2003) Andean uplift and climate change. Journal of the Geological Society, 160, 7-10. (Pubitemid 36141578)
39. Higgs R, (2006) Colombia-Venezuela-Trinidad "Caribbean Oblique Collision Model" revised: Sociedad Venezolana de Geofísicos, XIII Congreso Venezolano de Geofísica, Caracas, Memorias CD.
40. Hilty SL, Brown WL, (1986) A Guide to the Birds of Colombia. Princeton University Press, Princeton, NJ.
41. Hooghiemstra H, van der Hammen T, (2004) Quaternary Ice-Age dynamics in the Colombian Andes: developing an understanding of our legacy. Philosophical Transactions of the Royal Society of London B, 359, 173-180.
42. Hooghiemstra H, Wijninga VM, Cleef AM, (2006) The paleobotanical records of Colombia: implications for biogeography and biodiversity. Annals of the Missouri Botanical Garden, 96, 297-325.
43. Hoorn C, Wesselingh FP, ter Steege H, et al. (2010) Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity. Science, 330, 927-931.
44. Huelsenbeck JP, Hillis DM, Nielsen R, (1996) A likelihood-ratio test of monophyly. Systematic Biology, 45, 546-558. (Pubitemid 128040035)
45. Hughes C, Eastwood R, (2006) Exceptional rates of plant diversification after uplift of the Andes. Proceedings of the National Academy of Sciences, 103, 10334-10339.
46. Irving EM, (1975) Structural evolution of the northernmost Andes, Colombia. U.S. Geological Survey Professional Papers, 846, 47.
47. Johnson NK, Jones RE, (2001) A new species of Tody-Tyrant (Tyrannidae: Poecilotriccus) from Northern Peru. The Auk, 118, 334-341.
48. Kroonenberg SB, Bakker JGM, van der Wiel AM, (1990) Late Cenozoic uplift and paleogeography of the Colombian Andes: constraints on the development of high Andean biota. Geologie en Mijnbouw, 69, 279-290.
49. Lallemant AHG, Sisson VB, (2005) Exhumation of eclogites and blueschists in northern Venezuela: constraints from kinematic analysis of deformation structures. In: Caribbean/South American Plate Interactions, Venezuela (eds, Lallemant AHG, Sisson V,), pp. 193-206. Geological Society of America Special Paper, 394.
50. McGuire JA, Witt CC, Altshuler DL, Remsen JV, (2007) Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology, 56, 837-856.
51. Milá B, Wayne RW, Smith TB, (2009) Divergence with gene flow and fine-scale phylogeographical structure in the wedge-billed woodcreeper, Glyphorynchus spirurus, a Neotropical rainforest bird. Molecular Ecology, 18, 2979-2995.
52. Miller M, Bermingham E, Ricklefs R, (2007) Historical biogeography of the new world solitaires (Myadestes spp.). The Auk, 124, 868-885. (Pubitemid 47237352)
53. Mora A, Parra M, Strecker MR, et al. (2008) Climatic forcing of asymmetric orogenic evolution in the Eastern Cordillera of Colombia. Geological Society of America Bulletin, 120, 930-949.
54. Moritz C, Patton JL, Schneider CJ, Smith TB, (2000) Diversification of rainforest faunas: an integrated molecular approach. Annual Review of Ecology and Systematics, 31, 533-563. (Pubitemid 32122412)
55. Noble DC, McKee EH, Mourier T, Mégard F, (1990) Cenozoic stratigraphy, magmatic activity, compressive deformation, and uplift in northern Peru. Geological Society of America Bulletin, 102, 1105-1113.
56. Nylander JAA, Olsson U, Alström P, Sanmartín I, (2008) Accounting for phylogenetic uncertainity in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves:Turdus). Systematic Biology, 57, 257-268.
57. Olson DM, Dinerstein E, Wikramanayake ED, et al. (2001) Terrestrial ecoregions of the world: a new map of life on earth. BioScience, 51, 933-938. (Pubitemid 33072658)
58. Ostos M, Yoris F, Lallemant HG, (2005) Overview of the southeast Caribbean-South American plate boundary. Geological Society of America Special Papers, 394, 53-86.
59. Parker III TA, Schulenberg TS, Graves GR, Braun MJ, (1985) The avifauna of the Huancabamba region, Northern Peru. In: Neotropical Ornithology (eds, Buckley PA, Foster MS, Morton ES, Ridgely RS, Buckley FG,), pp. 169-197. Ornithological Monographs 36.
60. Pérez-Emán JL, (2005) Molecular phylogenetics and biogeography of the Neotropical redstarts (Myioborus; Aves, Parulinae). Molecular Phylogenetics and Evolution, 37, 511-528. (Pubitemid 41434037)
61. Picard D, Sempere T, Plantard O, (2008) Direction and timing of uplift propagation in the Peruvian Andes deduced from molecular phylogenetics of highland biotaxa. Earth and Planetary Science Letters, 271, 326-336.
62. Posada D, (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256. (Pubitemid 351882013)
63. Poulsen CJ, Ehlers TA, Insel N, (2010) Onset of convective rainfall during gradual late Miocene rise of the Central Andes. Science, 328, 490-493.
64. Rambaut A, Drummond AJ, (2003) Tracer v.1.3. Available at:.
65. Rambaut A, Grassley N, (1997) Seq-Gen: an application for Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Computer Applications in the Biosciences, 13, 235-238. (Pubitemid 27249927)
66. Ramos-Onsins SE, Rozas J, (2002) Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution, 19, 2092-2100. (Pubitemid 35440445)
67. Räsänen ME, Salo JS, Kalliola RJ, (1993) Fluvial perturbance in the western Amazon Basin: regulation by long-term sub-Andean tectonics. Science, 238, 1398-1401.
68. Ribas CC, Moyle RG, Miyaki CY, Cracraft J, (2007) The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proceedings of the Royal Society B: Biological Sciences, 274, 2399-2408. (Pubitemid 47436600)
69. Ronquist F, Huelsenbeck JP, (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574. (Pubitemid 37038874)
70. Schuchmann KL, (1999) Family Trochilidae (Hummingbirds). Lynx Edicions, Barcelona.
71. Simpson BB, (1979) Quaternary biogeography of the high montane regions of South America. In: The South American Herpetofauna: Its Origin, Evolution, and Dispersal (ed., Duellman WE,), pp. 157-188. Monographs of the Museum of Natural History, University of Kansas 7.
72. Smith BT, Klicka J, (2010) The profound influence of the Late Pliocene Panamanian uplift on the exchange, diversification, and distribution of New World birds. Ecography, 33, 333-342.
73. Stattersfield AJ, Crosby MJ, Long AJ, Wege DC, (1998) Endemic Bird Areas of the World. Birdlife International, Cambridge, UK.
74. Swofford DL, (2000) PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods). Ver 4.0b4a. Sinauer Associates, Sunderland, MA.
75. Villamil T, (1999) Campanian-Miocene tectonostratigraphy, depocenter evolution and basin development of Colombian and western Venezuela. Palaeogeography, Palaeoclimatology, Palaeoecology, 153, 239-275. (Pubitemid 29447132)
76. Weir JT, (2006) Divergent timing and patterns of species accumulation in lowland and highland Neotropical birds. Evolution, 60, 842-855. (Pubitemid 44804526)
77. Weir JT, (2009) Implications of genetic differentiation in Neotropical montane forest birds. Annals of the Missouri Botanical Garden, 96, 410-433.
78. Weir JT, Schluter D, (2008) Calibrating the avian molecular clock. Molecular Ecology, 17, 2321-2328. (Pubitemid 351623774)
79. Weir JT, Bermingham E, Schluter D, (2009) The Great American Biotic Interchange in birds. Proceedings of the National Academy of Sciences, USA, 106, 21737-21742.
80. Weir JT, Bermingham E, Miller MJ, Klicka J, González MA, (2008) Phylogeography of a morphologically diverse Neotropical montane species, the common bush-tanager (Chlorospingus ophthalmicus). Molecular Phylogenetics and Evolution, 47, 650-664.
81. Wilcox TP, (2004) SG Runner 1.5.2: A MAC OS X shell-wrapper for Seq-Gen.
82. Yu Y, Harris AJ, Xingjin H, (2010) S-DIVA (Statistical Dispersal-Vicariance Analysis): a tool for inferring biogeographic histories. Molecular Phylogenetics and Evolution, 56, 848-850.