The role of geography and ecology in shaping the p hylogeography of the speckled hummingbird (Adelomyia melanogenys) in Ecuador

Molecular Phylogenetics and Evolution

Volumn 43, Issue 3, 2007, Pages 795-807

  Chaves, Jaime A ^a,b,c   Pollinger, John P ^b   Smith, Thomas B ^b   LeBuhn, Gretchen ^a  

^a SAN FRANCISCO STATE UNIVERSITY   (United States)

^b Department of Ecology and Evolutionary Biology   (United States)

^c Fundacion Numashir para la Conservacion de Ecosistemas Amenazados   (Ecuador)

Author keywords

Andes; Directional selection; Ecuador; Morphology; Phylogeography; Remote sensing; Speckled hummingbird

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIRD; CLASSIFICATION; DNA SEQUENCE; ECOLOGY; ECUADOR; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ANIMALS; BIRDS; DNA, MITOCHONDRIAL; ECOLOGY; ECUADOR; GEOGRAPHY; HAPLOTYPES; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ADELOMYIA MELANOGENYS;

EID: 34248630503     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.11.006     Document Type: Article

References (101)

1. Aleixo A. Historical diversification of a terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification. Evolution 58 (2004) 1303-1317
2. Altshuler D.L., and Clark J. Darwin's hummingbirds. Science 300 (2003) 588-589
3. Altshuler D.L., and Dudley R. The ecological and evolutionary interface of hummingbird flight physiology. J. Exp. Biol. 205 (2002) 2325-2336
4. Altshuler D.L., Dudley R., and McGuire J.A. Resolution of a Paradox: hummingbird flight at high elevation does not come without a cost. Proc. Natl. Acad. Sci. USA 101 (2004) 17731-17736
5. Arctander P., and Fjeldså J. Andean tapaculos of the genus Scytalopus (Aves, Rhinocryptidae): a study of speciation using DNA sequence data. In: Loeschcke V., Tomiuk J., and Jain S.K. (Eds). Conservation Genetics (1994), Birkhäuser Verlag, Basel, Switzerland 205-225
6. Avise J.C., Arnold J., Ball E., et al. Intraspecific Phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18 (1987) 489-522
7. Bates J., and Zink R.M. Evolution into the Andes: molecular evidence for species relationships in the genus Leptopogon. Auk 111 (1994) 507-515
8. Bates J., Haffer J., and Grismer E. Avian mitochondrial DNA sequence divergence across a headwater stream of the Rio Tapajós, a major Amazonian river. J. Ornithol. 145 (2004) 199-205
9. Bleiweiss R. Tempo and mode of hummingbird evolution. Biol. J. Linn. Soc. 65 (1998) 63-76
10. Bleiweiss R. Origins of hummingbird faunas. Biol. J. Linn. Soc. 65 (1998) 77-97
11. Brumfield R.T., and Capparella P. Historical diversification of birds in northwestern South America: molecular perspective on the role of vicariant events. Evolution 4 (1996) 1607-1624
12. Burns K.J., and Naoki K. Molecular phylogenetics and biogeography of Neotropical tanagers in the genus Tangara. Mol. Phylogenet. Evol. 32 (2004) 838-854
13. Bush M.B. Amazonian speciation: a necessarily complex model. J. Biogeogr. 21 (1994) 5-17
14. Bush M.B. Of orogeny, precipitation, precession and parrots. J. Biogeogr. 32 (2005) 1301-1302
15. Chesser T.R. Evolution in the high Andes: the phylogenetics of Muscisaxicola Ground-Tyrants. Mol. Phylogent. Evol. 15 (2000) 369-380
16. Cheviron Z.A., Capparella A.P., and Vuilleumier F. Molecular phylogenetic relationships among the Geositta Miners (Furnariidae) and biogeographic implications for avian speciation in Fuego-Patagonia. Auk 122 (2005) 158-174
17. Cheviron Z.A., Hackett S.J., and Capparella P. Complex evolutionary history of a Neotropical lowland forest bird (Lepidothrix coronata) and its implications for historical hypotheses of the origin of Neotropical avian diversity. Mol. Phylogenet. Evol. 36 (2005) 338-357
18. Clement M., Posada D., and Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9 (2000) 1657-1659
19. Clegg S.M., Degnan S.M., Moritz C., Estoup A., Kikkawa J., and Owens I.P.F. Microevolution in island forms: the roles of drift and directional selection in morphological divergence of a passerine bird. Evolution 56 (2002) 2090-2099
20. Colinvaux P.A., De Oliveira P.E., and Bush M.B. Amazonian and Neotropical plant communities on glacial time-scales: The failure of the aridity and refuge hypothesis. Quaternary Sci. Rev. 19 (2000) 141-169
21. Coyne J.A., and Orr H.A. Speciation (2004), Sinauer Associates, Sunderland, MA
22. Cracraft J., and Prum R.O. Patterns and processes of diversification: speciation and historical congruence in some Neotropical birds. Evolution 42 (1988) 603-620
23. Eberhard J.R., and Bermingham E. Phylogeny and biogeography of the Amazona ochrocephala (Aves: Psittacidae) complex. Auk 121 (2004) 318-332
24. Ellsworth D., Honeycutt R., Silvy N., Bickham J., and Klimstra W. Historical biogeography and contemporary patterns of mitochondrial DNA variation in the White-tailed Deer from the Southeastern United States. Evolution 48 (1994) 122-136
25. Epting R.J. Functional dependence of the power for hovering on wing disc loading in hummingbirds. Phys. Zool. 53 (1980) 347-357
26. Excoffier L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131 (1992) 479-491
27. Farr T.G., and Kobrick M. Shuttle radar topography Mission produces a wealth of data. Am. Geol. Union Eos 81 (2000) 583-585
28. Feinsenger P., and Colwell R. Community organization among Neotropical nectar-feeding birds. Am. Zool. 18 (1978) 779-795
29. Feinsinger P., Colwell R., Terborgh J., and Budd S. Elevation and the morphology, flight energetics, and foraging ecology of tropical hummingbirds. Am. Nat. 113 (1979) 481-497
30. Fjeldså J. Geographical patterns for relict and young species of birds in Africa and South America and implications for conservation priorities. Biodivers. Conserv. 3 (1994) 207-226
31. Fjeldså, J., Krabbe, N., 1990. Birds of the High Andes. A Manual to the Birds of the Temperate Zone of the Andes and Patagonia, South America. Denmark Zoological Museum of the University of Copenhagen and Apollo. Svenborg, Denmark.
32. Fridolfsson A.K., and Ellegren H. A simple and universal method for molecular sexing of non-ratite birds. J. Avian Biol. 30 (1999) 116-121
33. Fu Y.X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147 (1997) 915-925
34. García-Moreno J. Is there a universal mtDNA clock for birds?. J. Avian Biol. 35 (2004) 465-468
35. García-Moreno J., and Fjeldså J. Comments on Taxonomy of Metallura. J. Ornithol. 141 (2000) 203-206
36. García-Moreno J., Arctander P., and Fjeldså J. Strong diversification at the treeline among Metallura hummingbirds. Auk 166 (1999) 702-711
37. García-Moreno J., Arctander P., and Fjeldså J. A case of rapid diversification in the Neotropics: phylogenetic relationships among Cranioleuca spinetail (Aves, Furnariidae). Mol. Phylogenet. Evol. 12 (1999) 273-281
38. García-Moreno J., Ohlson J., and Fjeldså J. MtDNA sequences support monophyly of Hemispingus tanagers. Mol. Phylogenet. Evol. 21 (2001) 424-435
39. García-Moreno J., Navarro-Sigüenza A.G., Townsend A.P., and Sánchez-González L.A. Genetic variation coincides with geographic structure in the common bush-tanager (Chlorospingus ophthalmicus) complex from Mexico. Mol. Phylogent. Evol. 33 (2004) 186-196
40. Graham A. Neotropical plant dynamics during the Cenozoic-diversification, and the ordering of evolutionary and speciation processes. Syst. Bot. 22 (1997) 139-150
41. Graham C.H., Ron S.R., Santos J.C., Schneider C., and Moritz C. Integrating phylogenetics and environmental niche models to explore speciation mechanisms in Dendrobatid frogs. Evolution 58 (2004) 1781-1793
42. Gregory-Wodzicki K.M. Uplift history of Central and Northern Andes: a review. Geol. Soc. Am. Bull. 112 (2000) 1091-1105
43. Haffer J. Alternative models of vertebrate speciation in Amazonia: an overview. Biodivers. Conserv. 6 (1997) 451-477
44. Hall J. Montane speciation patterns in Ithomiola butterflies (Lepidoptera: Riodinidae): are they consistently moving up in the world?. Proc. R. Soc. Lond. B Biol. Sci. 272 (2005) 2457-2466
45. Hall, T., 2005b. Bioedit v 7.0.5. .
46. Hansen M.C., DeFries R.S., Townshend J.R.G., Sohlberg R.A., Dimiceli C., and Carroll M. Towards an operational MODIS continuous field of percent tree cover algorithm: examples using AVHRR and MODIS data. Remote Sens. Environ. 83 (2002) 303-319
47. Helmens K.F., and van der Hammen T. The Pliocene and Quaternary of the high plain of Bogotá (Colombia): a history of tectonic uplift, basin development and climatic change. Q. Int. 21 (1994) 41-61
48. Heindl M., and Schuchmann K.-L. Biogeography, geographical variation and taxonomy of the Andean hummingbird genus Metallura Gould, 1847. J. Biogeogr. 139 (1998) 425-473
49. Hijmans, R.J., Cameron, S., Parra, J., 2004. WorldClim, Version 1.3. 2004. .
50. Hillis D.M., and Bull J.J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
51. Ho Y.W.S., Phillips M.J., Cooper A., and Drummond A.J. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 22 (2005) 1561-1568
52. Huelsenbeck, J.P., Ronquist, F., 2001. Mr. Bayes v.3.1: A program for the Bayesian inference of phylogeny.
53. Langerhans R.B., Layman C.A., Langerhans A.K., and Dewitt T.J. Habitat- associated morphological divergence in two Neotropical fish species. Biol. J. Linn. Soc. 80 (2003) 689-698
54. Lovette I.L. Mitochondrial dating and mixed support for the "2% rule" in birds. Auk 121 (2004) 1-6
55. Lovette I.L., and Bermingham E. Explosive speciation in New World Dendroica warblers. Proc. R. Soc. Lond. B Biol. Sci. 266 (1999) 1629-1636
56. Marks B.D., Hackett S.J., and Capparella A.P. Historical relationships among Neotropical lowland forest areas of endemism as inferred from mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Mol. Phylogenet. Evol. 24 (2002) 155-167
57. Moritz C., Patton C.J., Schneider C.J., and Smith T.B. Diversification of rainforest faunas: an integrated molecular approach. Annu. Rev. Ecol. Syst. 31 (2000) 533-563
58. Myneni R.B., Hoffman S., Knyazikhin Y., Privette J.L., et al. Running, global products of vegetation leaf area and fraction absorbed PAR from year one of MODIS data. Remote Sens. Environ. 83 (2002) 214-231
59. Nicholls J.A., and Austin J.J. Phylogeography of an east Australian wet-forest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology. Mol. Ecol. 14 (2005) 1485-1496
60. Nylander, J.A., 2004. Mr Modeltest 2.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
61. Orr M.R., and Smith T.B. Ecology and speciation. Trends Ecol. Evol. 13 (1998) 502-506
62. Overont L.C., and Rhoads D.D. Molecular phylogenetic relationships of Xiphidiopicus percussus, Melanerpes, and Shyrapicus (Aves: Picidae) based on cytochrome b sequence. Mol. Phylogenet. Evol. 41 (2006) 288-294
63. Parra J.L., Graham C.H., and Freile J.F. Evaluating alternative data sets for ecological niche models of birds in the Andes. Ecography 27 (2004) 350-360
64. Patton D.C., and Collins B.G. Bills and tongues of nectar-feeding birds: a review of morphology, function and performance, with intercontinental comparisons. Aust. J. Ecol. 14 (1989) 473-506
65. Patton J.L., and da Silva M.N.F. Rivers, refuges, and ridges: the geography of speciation of Amazonian mammals. In: Howard D., and Berlocher S. (Eds). Endless Forms: Modes and Mechanisms of Speciation (1998), Oxford University Press, New York 202-213
66. Patton J.L., and Smith M.F. mtDNA phylogeny of Andean mice: a test of diversification across ecological gradients. Evolution 46 (1992) 174-183
67. Pérez-Emán J. Molecular phylogenetics and biogeography of the Neotropical redstarts (Myioborus; Aves, Parulinae). Mol. Phylogenet. Evol. 37 (2005) 511-528
68. Peterson T.A., Soberón J., and Sánchez-Cordero V. Conservatism of ecological niches in evolutionary time. Science 285 (1999) 1265-1267
69. Puorto G., Salmão M., Theakston R.D.G., Thorpe R.S., Warrell D.A., and Wüster W. Combining mitochondrial DNA sequences and morphological data to infer species boundaries: phylogeography of lanceheaded pitvipers in the Brazilian Atlantic forest, and the status of Bothrops pradoi (Squamata: Serpentes: Viperidae). J. Evol. Biol. 14 (2001) 527-538
70. Remsen J.V. High incidence of "leapfrog" pattern of geographic variation in Andean birds: implications for the speciation process. Science 224 (1984) 171-173
71. Reynolds J., Weir B.S., and Cockerham C.C. Estimation for the coancestry coefficient: basis for a short-term genetic distance. Genetics 105 (1983) 767-779
72. Ribas C.C., and Miyaki C. Molecular systematics in Aratinga parrots: species limits and historical biogeography in the 'solstitialis' group, and the systematic position of Nandayus nenday. Mol. Phylogenet. Evol. 30 (2004) 663-675
73. Rice W.R., and Hostert E.E. Laboratory experiments on speciation-What have we learned in 40 years. Evolution 47 (1993) 1637-1653
74. Ridgely R., and Greenfield P. The Birds of Ecuador (2001), Cornell University Press, USA
75. Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
76. Roy M.S., Cardoso Da Silva J.M., Arctander P., García-Moreno J., and Fjeldså J. The speciation of South American and African birds in montane regions. In: Mindell D.P. (Ed). Avian Molecular Evolution and Systematics (1997), Academic Press, San Diego 325-343
77. Scanlan B.E., Maxson L.R., and Duellman W.E. Albumin evolution in marsupial frogs (Hylidae: Gastrotheca). Evolution 34 (1980) 222-229
78. Schneider C. Natural selection and speciation. Proc. Natl. Acad. Sci. USA 97 (2000) 12398-12399
79. Schneider C., and Moritz C. Rainforest refugia and evolution in Australia's wet tropics. Proc. R. Soc. Lond. B Biol. Sci. 266 (1999) 191-196
80. Schneider, S., Roessli, D., Excoffier, L., 2000. Arlequin: A software for population genetics data analysis. Ver 2.000. Genetics and Biometry Lab, Dept. of Anthropology, University of Geneva; .
81. Schuchmann K.-L., Weller A.-A., and Heynen I. Systematics and biogeography of the Andean genus Eriocnemis (Aves Trochilidae). J. Ornithol. 142 (2001) 433-481
82. Sehgal R.N.M., Jones H.I., and Smith T.B. Molecular evidence for host specificity of parasitic nematode microfilariae in some African rainforest birds. Mol. Ecol. 14 (2005) 3988-3997
83. Sierra, R., 1999. Propuesta preliminary de un sistema de clasificación de vegetación para el Ecuador continental. Proyecto INEFAN/GEF-BIRF y EcoCiencia, Quito, Ecuador.
84. Simpson B.B. Pleistocene changes in the flora of the high tropical Andes. Paleobiology 1 (1975) 273-294
85. Simpson, B.B., 1979. Quaternary biogeography of the high montane regions of South America. In: Duellman, W.E. (Ed.), The South American herpetofauna: its origin, evolution, and dispersal. Monographs of the Museum of Natural History University of Kansas, no.7, Lawrence, pp. 157-188.
86. Smith T.B., Calsbeek R., Wayne R.K., Holder K.H., Pires D., and Bardeleben C. Testing alternative mechanisms of evolutionary divergence in an African forest passerine bird. J. Evol. Biol. 18 (2005) 257-268
87. Spikings R.A., and Crowhurst P.V. (U-Th)/He thermochronometric constraints on the late Miocene-Pliocene tectonic development of the northern Cordillera Real and the Interandean Depression, Ecuador. J. S. Am Earth Sci. 17 (2004) 239-251
88. Steinmann M., Hungerbühler D., Seward D., and Winkler W. Neogene tectonic evolution and exhumation of the southern Ecuadorian Andes: a combined stratigraphy and fission-track approach. Tectonophysics 307 (1999) 255-276
89. Swofford, D.L., 1999. PAUP*. Phylogenetic analysis using parsimony (*and other methods), v.4.0. Sunderland, MA: Sinauer Associates.
90. Temeles E.J., and Kress J. Adaptation in a plant-hummingbird association. Science 300 (2003) 630-633
91. Temeles E.J., and Roberts W.M. Effect of sexual dimorphism in bill length on foraging behavior: an experimental analysis of hummingbirds. Oecologia 94 (1993) 87-94
92. Temeles E.J., Pan I.L., Brennan J.L., and Horwitt J.N. Evidence for ecological causation of sexual dimorphism in a hummingbird. Science 289 (2000) 441-443
93. Travers S.E., Temeles E.J., and Pan I. The relationship between nectar spur curvature in jewelweed (Impatiens capensis) and pollen removal by hummingbird pollinators. Can. J. Bot. 81 (2003) 164-170
94. Vogler A., and DeSalle R. Phylogeographic patterns in coastal North American Tiger Beetles (Cicindela dorsalis SAY) inferred from mitochondrial DNA sequences. Evolution 47 (1993) 1192-1202
95. Vuille M.R., Bradley S., and Keimig F. Climate variability in the Andes of Ecuador and its relation to Tropical Pacific and Atlantic sea surface temperature anomalies. J. Clim. 13 (2000) 2520-2535
96. Vuilleumier F. Insular biogeography in continental regions. I. The northern Andes of South America. Am. Nat. 104 (1970) 373-387
97. Vuilleumier F. Pleistocene changes in the fauna and Flora of South America. Science 173 (1971) 771-780
98. Vuillemier, F., 1980. Speciation in birds of the high Andes. In: Acta XVII Congressus internationalis ornithology. Band II, Deustche Ornithologen-Gesellschaft, Berlin, pp. 1256-1261.
99. Willmott K.R., Jason P.W., and Hall W. Systematics of Hypanartia (Lepidoptera: Nymphalidae: Nymphalinae), with a test for geographical speciation mechanisms in the Andes. Syst. Entomol. 26 (2001) 369-399
100. Wolf L.L., Stiles G., and Hainsworth F.R. Ecological organization of a tropical highland hummingbird community. J. Anim. Ecol. 45 (1976) 349-379
101. Zimmer J.T. Studies of Peruvian Birds. No. 60: The genera Heliodoxa, Phlogophilus, Urosticte, Polyplancta, Adelomyia, Coeligena, Ensifera, Oreotrochilus, and Topaza. Am. Mus. Novi. No. (1951) 1513