Implications of genetk differentiation in neotropical montane forest birds

Annals of the Missouri Botanical Garden

Volumn 96, Issue 3, 2009, Pages 410-433

  Weir, Jason T ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

Andes; Birds; Endemism; Neotropical; Phylogeography; River barriers

Indexed keywords

ANACARDIUM OCCIDENTALE; AVES;

EID: 70350501492     PISSN: 00266493     EISSN: None     Source Type: Journal    
DOI: 10.3417/2008011     Document Type: Article

References (87)

1. Aleixo, A. 2002. Molecular systematics and the role of the "varzea"-"terra-firme" ecotone in the diversification of Xiphorhynchus woodcreepers (Aves: Dendrocolaptidae). Auk 119: 621-640.
2. American Ornithologists' Union. 1998. Check-list of North American Birds, 7th ed. American Ornithologists' Union, Washington, D.C.
3. Anderson, T. H. 1969. First evidence for glaciation in Sierra Los Cuchurnatanes Range, north-western Guatemala. Special Pap. Geol. Soc. Amer. 121: 387.
4. Audemard, F. A. 2003. Geomorphic and geologic evidence of ongoing uplift and deformation in the Merida Andes, Venezuela. Quatern. Int. 101: 43-65.
5. Barker, F. K. & S. M. Lanyon. 2000. The impact of parsimony weighting schemes on inferred relationships among toucans and neotropical harhets (Aves: Piciformes). Molec. Phylogen. Evol. 15: 215-234.
6. Baum, B. R. 1992. Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees. Taxon 41: 3-10.
7. Bennett. K. D. 1990. Milankovitch cycles and their effects on species in ecological and evolutionary time. Paleobiology 16: 11-21.
8. Bininda-Emonds, 0. R. P. 2004. The evolution of supertrees. Trends Ecol. Evol. 19: 315-322.
9. -, & H. N. Bryant. 1998. Properties of matrix representation with parsimony analyses. Syst. Biol. 47: 497-508.
10. - & M. J. Sanderson. 2001. Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. Syst. Biol. 50: 565-579.
11. Brumfield, R. T. & S. V. Edwards. 2007. Evolution into and out of the Andes: A Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 61: 346-367.
12. Burns, K. J. 1997. Molecular systematica of tanagers (Thraupinae): Evolution and biogeography of a diverse radiation of Neotropical birds. Molec. Phylogen. Evol. 8: 334-348.
13. - & K. Naoki. 2004. Molecular phylogenetics and biogeography of Neotropical tanagers in the genus Tangara. Molec. Phylogen. Evol. 32: 838-854.
14. Cadena, C. D, J. Klicka & R. E. Ricklefs. 2007. Evolutionary differentiation in the Neotropical montane region: Molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Molec. Phylogen. Evol. 44: 993-1016.
15. Coates, A. G. & J. A. Obando. 1996. The geologic evolution of the Central American isthmus. Pp. 21-56 in J. B. C. Jackson. A. F. Budd & A. G. Coates (editors), Evolution and Environment in Tropical America. University of Chicago Press. Chicago.
16. -, J. B. C. Jackson, L. S. Collins, T. M. Cronin, H. J. Dowsett, L. M. Bybell. P. Jung & J. A. Obando. 1992. Closure of the Isthmus of Panama-The near-shore marine record of Costa Rica and western Panama. Bull. Geol. Soc. Amer. 104: 814-828.
17. Coyne, J. & T. Price. 2000. Little evidence for sympatric speciation in island birds. Evolution 54: 2166-2171.
18. Cracraft, J. 1985. Historical biogeography and patterns of differentiation within the South American avifauna: Areas of endemism. Neotrop. Ornithol. 36: 49-84.
19. Dhont. D., G. Backe & Y. Hervouet. 2005. Plio-Quaternary extension in the Venezuelan Andes: Mapping from SAR JERS imagery. Teclonophysics 399: 293-312.
20. Dingle, C, I. J. Lovelle, C. Canaday & T. B. Smith. 2006. Elevational zonatiou and the phylogenetic relationships of the Henicorhina wood-wrens. Auk 123: 119-134.
21. Dodson, C. H, & A. H, Gentry. 1991. Biological extinction in western Ecuador. Ann. Missouri Bot. Card. 78: 273-295.
22. Drummond, A. J. & A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7: 214.
23. Fjeldså, J. 1995. Geographic patterns of neoendemic and older relict species of Andean forest birds: The significance of ecologically stable areas. Pp. 89-102 in S. P. Churchill, H. Balslev, E. Forero & J. L. Luteyn (editors), Biodiversity and Conservation of Neotropical Montane Forests. New York Botanical Garden, Bronx.
24. - & N. Krabbe. 1990. Birds of the High Andes: A Manual to the Birds of the Temperate Zone of the Andes and Patagonia, South America. Apollo Books, Copenhagen.
25. -& J. C. Lovett. 1997. Biodiversity and environmental stability. Biodivers. & Conservation 6: 315-323.
26. -, D. Ehrlich, E. Lambin & E. Prins. 1997. Are biodiversity 'hotspots' correlated with current ecocli-matic stability? A pilot study using the NOAA-AVHRR remote sensing data. Biodivers. & Conservation 6:401-1122
27. -, E. Lambin & B. Mertens. 1999. Correlation between endemism and local ecoclimatic stability documented by comparing Andean bird distributions and remotely sensed land surface data. Ecography 22: 63-78.
28. -, M. D. Alvarez, J. M. Lazcano & B. Leon. 2005. Illicit crops and armed conflict as constraints on biodiversity conservation in the Andes region. Ambio 34: 205-211.
29. Garcia-Moreno, J., P. Arctander & J. Fjeldsa. 1998. Pre-Pleistocene differentiation among chat-tyrants. Condor 100: 629-640.
30. -, -&-. 1999. A ease of rapid diversification in the neotropics: Phylogenetic relationships among Cranioleuca spinetails (Aves. Furnariidae). Molec. Phylogen. Evol. 12: 273-281.
31. -, J. Ohlson & J. Fjeldsa. 2001. MtDNA sequences support monophyly of Hemispingus tanagers. Molec. Phylogen. Evol. 21: 424-435.
32. -, N. Cortes, G. M. Garcia-Deras & B. E. Hernandez-Banos. 2006. Local origin and diversification among Iximpornis hummingbirds: A Mesoamerican taxon. Molec. Phylogen. Evol. 38: 488-498.
33. Gently, A. H. 1986. Species richness and floristie composition of Choco region plant communities. Caldasia 15: 71-91.
34. -. 1992. Tropical forest biodiversity-Distributional patterns and their conservational significance. Oikos 63: 19-28.
35. Grafe. K., W. Frisch, I. M. Villa & M. Meschede. 2002. Geodyitamic evolution of southern Costa Rica related to low-angle subduction of the Cocos Ridge: Constraints from thermochronology. Tectonophysics 348: 187-204.
36. Gregory-Wodzicki, K. M. 2000. Uplift history of the central and northern Andes: A review. Bull. Geol. Soc. Amer. 112: 1091-1105.
37. Hackett, S. J. 1995. Molecular systematics and zoogeography of flowerpiercers in the Diglossa baritula complex. Auk 112: 156-170.
38. Heine, K. 1988. Late Quaternary glacial chronology of the Mexican volcanoes. Die Geowissenschaflen 7: 197-205.
39. Henderson. A., S. P. Churchill & J. L. Luteyn. 1991. Neotropical plant diversity. Nature 351: 21-22.
40. Hooghieinstra, H. & A. M. Cleff. 1995. Pleistocene climatic change and environment and generic dynamics in the North Andean montane forest and paramo. Pp. 35-49 in S. P. Churchill, H. Balslev, E. Forero & J. L. Luteyn (editors), Biodiversity and Conservation of Neotropical Montane Forests. New York Botanical Garden,Bronx.
41. & T. van der Hammen. 2004. Quaternary lee-Age dynamics in the Colombian Andes: Developing an understanding of our legacy. Philos. Trans, Ser. B 359: 173-180.
42. -, J. L. Melice, A. Berger & N. J. Shackleton. 1993. Frequency-spectra and paleoclimatic variability of the high-resolution 30 1450 ka Funza I pollen record (Eastern Cordillera, Colombia). Quatern. Sci. Rev. 12: 141-156.
43. Irestedt, M., J. Fjeldsa & P. G. P. Ericson. 2004. Phylogenetic relationships of woodcreepers (Aves: Den-drocolaptinae)-Incongruence between molecular and morphological data. J. Avian Biol. 35: 280-288.
44. Klicka, J. & G. M. Spellman. 2007. A molecular evaluation of the North American "grassland" sparrow clade. Auk 124: 537-551.
45. Kreft, H. & W. Jetz. 2007. Global patterns and determinants of vascular plant diversity. Proc. Natl. Acad. Sci. U.S.A. 104: 5925-5930.
46. Lachniet, M. S. & G. 0. Seltzer. 2002. Late Quaternary glaciation of Costa Rica. Bull. Geol. Soc. Amer. 114: 547-558.
47. Lovette, I. J. 2004. Mitochondrial dating and mixed support for the "2% rule" in birds. Auk 121: 1-6.
48. Mayr, E. & L. L. Short. 1970. Species Taxa of North American Birds: A Contribution to comparative Systematics. Nuttall Ornithological Club, Cambridge, Massachusetts.
49. - & J. Diamond. 2001. The Birds of Northern Melanesia: Speciation, Ecology, and Biogeography. Oxford University Press, Oxford.
50. Miller, M. J., E. Bermingham & R. E. Ricklefs. 2007. Historical biogeography of the new world solitaires (Myadestes spp.). Auk 124: 868-885.
51. Moyle, R. G. 2004. Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data. Molec. Phylogen. Evol. 30: 187-200.
52. Nahum. L. A., S. L. Pereira. F. M. C. Fernandes, S. R. Matioli & A. Wajntal. 2003. Diversification of Raniphastinae (Aves, Ramphastidae) prior to the Cretaceous/Tertiary boundary as shown by molecular clock of mtDNA sequences. Genet. Molec. Biol. 26: 411-418.
53. Newton, I. 2003. The Speciation and Biogeography of Birds. Academic Press, Amsterdam.
54. O'Neill, J. P. 1992. A general overview of the montane avifauna of Peru. Mem. Mus. Hist. Nat. "Javier Prado" 21: 47-55.
55. Outlaw, D. C, G. Voelker, B. Mila & D. J. Girman. 2003. Evolution of long-distance migration in and historical biogeography of Catharus thrushes: A molecular phylogenetic approach. Auk 120: 299-310.
56. Perez-Eman, J. L. 2005. Molecular phylogenetics and biogeography of the Neotropical redstarts (Myioborus; Aves, Parulinae). Molec. Phylogen. Evol. 37: 511-528.
57. Phillimore, A. B., C. D. L. Orme, G. H. Thomas. T. M. Blackburn, P. M. Bennett, K. J. Gaslon & I. P. F Owens. 2008. Sympatric speciation in birds is rare: Insights from range data and simulations. Amer. Naturalist 171: 646-657.
58. Price, J. J. & S. M. Lanyon. 2004. Song and molecular data identify congruent but novel affinities of the Green Oropendola (Psarocolius viridis). Auk 121: 224-229.
59. Price. T. 2007. Speciation in Birds. Roberts and Company Publishers, Greenwood Village, Colorado.
60. Purvis, A. 1995. A modification to Baum and Ragans method for combining phylogenetic trees. Syst. Biol. 44: 251-255.
61. Rambaut, A. 2007. FigTree. 〈http://tree.bio.ed.ac.uk/software/ figtree/〉, accessed 23 June 2009.
62. Remsen, J. V., C. D. Cadena, A. Jaramillo, M. Nores, J. F. Pacheco, M. B. Robhins, T. S. Schulenberg, F. G. Stiles, D. F. Stotz & K. J. Zimmer. 2007. A classification of the bird species of South America. American Ornithologists' Union, Washington, D.C., 〈http://www.museum.lsu.edu/~Remsen/SACCBaseline. html〉, accessed 15 December 2007.
63. Ribas, C. C, R. G. Moyle, C. Y. Miyaki & J. Cracraft. 2007. The assembly of montane biotas: Linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionns parrots. Proc. Royal Soc. London, Ser. B, Biol. Sci. 274: 2399-2408.
64. Rice, N. H., A. T. Peterson & G. Escalona-Segura. 1999. Phylogenetic patterns in montane Troglodytes wrens. Condor 101: 446-A51.
65. Rosenzweig, M. L. 1995. Species Diversity in Space and Time. Cambridge University Press, Cambridge, United Kingdom.
66. Simpson, G. G. 1980. Splendid Isolation: The Curious History of South American Mammals. Yale University Press, New Haven, Connecticut.
67. Stattersfield, A. J., M. J. Crosby, A. J. Long & D. C. Wege. 1998. Endemic Bird Areas of the World. Birdlife International, Cambridge, United Kingdom.
68. Stehli, F. & S. Webb. 1985. The Great American Biotic Interchange. Plenum Press, New York.
69. Stotz, D. F., J. W. Fitzpatrick, T. A. Parker & D. K. Moskovits. 1996. Neotropical Birds: Ecology and Conservation. University of Chicago Press, Chicago.
70. Strewe, R, C. Navarro & C. J. Villa-De Leon. 2006. Conservation of the endemic birds of the Sierra Nevada de Santa Marta massif, Colombia. J. Ornithol. 147: 258-259.
71. Swofford, D. L. 2002. PAUP* 4.0bl0: Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
72. Valencia, R., N. Pitman, S. León-Yánez & P. M. jørgensen. 2000. Libro Rojo de las Plantas Endemicas del Ecuador 2000. Herbario QCA, Pontificia Universidad Catolioa del Ecuador, Quito.
73. Van't Veer, R. & H. Hooghiemstra. 2000. Montane forest evolution during the last 650 000 yr in Colombia: A multivariate approach based on pollen record Funza-L J. Quatern. Sci. 15: 329-346
74. Voelker, G. 2002. Molecular phylogenetics and the historical biogeography of dippers (Cinclus). Ibis 144: 577-584.
75. -, S. Rohwer, R. C. K. Bowie & D. C. Outlaw. 2007. Molecular systematics of a speciose, cosmopolitan songbird genus: Defining the limits of, and relationships among, the Tardus thrushes. Molec. Phylogen. Evol. 42: 422-434.
76. Vogler, A. P. & R. DeSalle. 1994. Diagnosing units of conservation management. Conservation Biol. 8: 354-363.
77. Vuilleumier, F. 1969. Pleistocene speciation in birds living in the high Andes. Nature 1179-1180.
78. - . 1980. Speciation in birdsof the high Andes. ActaXVII Congressus Internationalis Omithologici 2: 1256-1261.
79. Webb, S. 1985. Late Cenozoic Mammal Dispersals between the Americas. Pp. 357-386 in F. Stehli & S. Webb (Editors), the Great American Biotic Interchange. Plenum Press, New York.
80. Weckslein. J. D. 2005. Molecular phylogenetics of the ramphas-tos toucans: Implications for the evolution of morphology. vocalizations, and coloration. Auk 122: 1191-1209.
81. Weir, J. T. 2006. Divergent timing and patterns of species accumulation in lowland and highland Neotropical birds. Evolution 60: 842-855.
82. - & D. Schluter. 2004. Ice sheets promote speciation in boreal birds. Proc. Royal Soc. London, Ser. B, Biol. Sci. 271: 1881-1887.
83. - & -. 2008. Calibrating the avian molecular clock. Molec. Ecol. 17: 2321-2328.
84. -, E. Bermingham, M. J. Miller, J. Klicka & M. A. Gonzales. 2008. Phylogeography of a morphologically diverse Neotropical montane species, the common bush-tanager (Chlorospingus ophthalmicus). Molec. Phylogen. Evol. 47: 650-664.
85. White, S. E. & S. Valastro. 1984. Pleistocene glaciation of Volcano Ajusco, Central Mexico, and comparison with the standard Mexican glacial sequence. Quatern. Int. 21: 21-35.
86. Winker, K. & C. L. Pruett. 2006. Seasonal migration, speciation, and morphological convergence in the genus Catharus (Turdidae). Auk 123: 1052-1068.
87. Zink, R. M., R. C. Blackwell-Rago & F. Ronquist. 2000. The shifting roles of dispersal and vicariance in biogeography. Proc. Royal Soc. London, Ser. B, Biol. Sci. 267: 497-503.