메뉴 건너뛰기




Volumn 19, Issue 12, 2002, Pages 2092-2100

Statistical properties of new neutrality tests against population growth

Author keywords

Coalescent simulations; Neutrality tests; Population expansion; Population growth

Indexed keywords

DNA; MITOCHONDRIAL DNA;

EID: 0036897674     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a004034     Document Type: Article
Times cited : (1757)

References (54)
  • 1
    • 0035969997 scopus 로고    scopus 로고
    • A highly variable segment of human subterminal 16p reveals a history of population growth for modem humans outside Africa
    • Alonso, S., and J. A. L. Armour. 2001. A highly variable segment of human subterminal 16p reveals a history of population growth for modem humans outside Africa. Proc. Natl. Acad. Sci. USA 98:864-869.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 864-869
    • Alonso, S.1    Armour, J.A.L.2
  • 2
    • 0030056912 scopus 로고    scopus 로고
    • The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism
    • Aris-Brosou, S., and L. Excoffier. 1996. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol. Biol. Evol. 13:494-504.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 494-504
    • Aris-Brosou, S.1    Excoffier, L.2
  • 3
    • 0032713236 scopus 로고    scopus 로고
    • Detecting population expansion and decline using microsatellites
    • Beaumont, M. A. 1999. Detecting population expansion and decline using microsatellites. Genetics 153:2013-2029.
    • (1999) Genetics , vol.153 , pp. 2013-2029
    • Beaumont, M.A.1
  • 4
    • 0029097280 scopus 로고
    • The number of segregating sites in expandind human populations, with implications for estimates of demographic parameters
    • Bertorelle, G., and M. Slatkin. 1995. The number of segregating sites in expandind human populations, with implications for estimates of demographic parameters. Mol. Biol. Evol. 12:887-892.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 887-892
    • Bertorelle, G.1    Slatkin, M.2
  • 5
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphism
    • Braverman, J. M., R. R. Hudson, N. L. Kaplan, C. H. Langley, and W. Stephan. 1995. The hitchhiking effect on the site frequency spectrum of DNA polymorphism. Genetics 140:783-796.
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1    Hudson, R.R.2    Kaplan, N.L.3    Langley, C.H.4    Stephan, W.5
  • 6
    • 0035793887 scopus 로고    scopus 로고
    • Genetic clues to dispersal in human populations: Retracing the past from the present
    • Cann, R. L. 2001. Genetic clues to dispersal in human populations: Retracing the past from the present. Science 291: 1742-1748.
    • (2001) Science , vol.291 , pp. 1742-1748
    • Cann, R.L.1
  • 7
    • 0029998061 scopus 로고    scopus 로고
    • Geographic variation in human mitochondrial DNA control region sequence: The population history of Turkey and its relationship to the European populations
    • Comas, D., F. Calafell, E. Mateu, A. Pérez-Lezaun, and J. Bertranpetit. 1996. Geographic variation in human mitochondrial DNA control region sequence: The population history of Turkey and its relationship to the European populations. Mol. Biol. Evol. 13:1067-1077.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1067-1077
    • Comas, D.1    Calafell, F.2    Mateu, E.3    Pérez-Lezaun, A.4    Bertranpetit, J.5
  • 8
    • 0034983649 scopus 로고    scopus 로고
    • Haplotype tests using coalescent simulations conditional on the number of segregating sites
    • Depaulis, F., S. Mousset, and M. Veuille. 2001. Haplotype tests using coalescent simulations conditional on the number of segregating sites. Mol. Biol. Evol. 18:1136-1138.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1136-1138
    • Depaulis, F.1    Mousset, S.2    Veuille, M.3
  • 9
    • 0029559462 scopus 로고
    • Coalescents and genealogical structure under neutrality
    • Donnelly, P., and S. Tavaré. 1995. Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 29: 401-421.
    • (1995) Annu. Rev. Genet. , vol.29 , pp. 401-421
    • Donnelly, P.1    Tavaré, S.2
  • 10
    • 0011922033 scopus 로고    scopus 로고
    • Simulations show that neither population expansion nor population stationarity in a West African population can be rejected
    • Eller, E., and H. C. Harpending. 1996. Simulations show that neither population expansion nor population stationarity in a West African population can be rejected. Mol. Biol. Evol. 13:1155-1157.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1155-1157
    • Eller, E.1    Harpending, H.C.2
  • 11
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • Ewens, W. J. 1972. The sampling theory of selectively neutral alleles. Theor. Pop. Biol. 3:87-112.
    • (1972) Theor. Pop. Biol. , vol.3 , pp. 87-112
    • Ewens, W.J.1
  • 12
    • 0026682501 scopus 로고
    • Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregating sites as compared to phylogenetic estimates
    • Felsenstein, J. 1992. Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genet. Res. 59:139-147.
    • (1992) Genet. Res. , vol.59 , pp. 139-147
    • Felsenstein, J.1
  • 13
    • 0029980416 scopus 로고    scopus 로고
    • New statistical tests of neutrality for DNA samples from a population
    • Fu, Y.-X. 1996. New statistical tests of neutrality for DNA samples from a population. Genetics 143:557-570.
    • (1996) Genetics , vol.143 , pp. 557-570
    • Fu, Y.-X.1
  • 14
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality against population growth, hitchhiking and background selection
    • -. 1997. Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
  • 15
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y.-X., and W.-H. Li. 1993. Statistical tests of neutrality of mutations. Genetics 133:693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.-X.1    Li, W.-H.2
  • 16
    • 0033180294 scopus 로고    scopus 로고
    • e, an overview and prospects of coalescent theory
    • e, an overview and prospects of coalescent theory. Theor. Pop. Biol. 56:1-10.
    • (1999) Theor. Pop. Biol. , vol.56 , pp. 1-10
  • 17
    • 0035819777 scopus 로고    scopus 로고
    • Inference of past population expansion from the timing of coalescence events in a gene genealogy
    • Furlong, R. F., and J. F. Y. Brookfield. 2001. Inference of past population expansion from the timing of coalescence events in a gene genealogy. J. Theor. Biol. 209:75-86.
    • (2001) J. Theor. Biol. , vol.209 , pp. 75-86
    • Furlong, R.F.1    Brookfield, J.F.Y.2
  • 18
    • 0034086970 scopus 로고    scopus 로고
    • Detecting bottlenecks and selective sweeps from DNA sequence polymorphism
    • Galtier, N., F. Depaulis, and N. H. Barton. 2000. Detecting bottlenecks and selective sweeps from DNA sequence polymorphism. Genetics 155:981-987.
    • (2000) Genetics , vol.155 , pp. 981-987
    • Galtier, N.1    Depaulis, F.2    Barton, N.H.3
  • 19
    • 0028782096 scopus 로고
    • Sampling theory for neutral alleles in a varying environment
    • Griffiths, R. C., and S. Tavaré. 1994. Sampling theory for neutral alleles in a varying environment. Philos. Trans. R. Soc. Lond. B 344:403-410.
    • (1994) Philos. Trans. R. Soc. Lond. B , vol.344 , pp. 403-410
    • Griffiths, R.C.1    Tavaré, S.2
  • 20
    • 0028484009 scopus 로고
    • Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution
    • Harpending, H. C. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum. Biol. 66:591-600.
    • (1994) Hum. Biol. , vol.66 , pp. 591-600
    • Harpending, H.C.1
  • 23
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson, R. R. 1983. Properties of a neutral allele model with intragenic recombination. Theor. Pop. Biol. 23:183-201.
    • (1983) Theor. Pop. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 24
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • -. 1990. Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol. 9:1-44.
    • (1990) Oxf. Surv. Evol. Biol. , vol.9 , pp. 1-44
  • 25
    • 0000601292 scopus 로고
    • The how and why of generating gene genealogies
    • N. Takahata and A. G. Clark, eds. Sinauer Associates, Inc., Sunderland, Mass
    • -. 1993. The how and why of generating gene genealogies. Pp. 23-36 in N. Takahata and A. G. Clark, eds. Mechanisms of Molecular Evolution. Sinauer Associates, Inc., Sunderland, Mass.
    • (1993) Mechanisms of Molecular Evolution , pp. 23-36
  • 26
    • 0032006951 scopus 로고    scopus 로고
    • Using mitochondrial and nuclear DNA markers to reconstruct human evolution
    • Jorde, L. B., M. Bamshad, and A. R. Rogers. 1998. Using mitochondrial and nuclear DNA markers to reconstruct human evolution. Bioessays 20:126-136.
    • (1998) Bioessays , vol.20 , pp. 126-136
    • Jorde, L.B.1    Bamshad, M.2    Rogers, A.R.3
  • 28
    • 0033635896 scopus 로고    scopus 로고
    • A power analysis of microsatellite-based statistics for inferring past population growth
    • King, J. P., M. Kimmel, and R. Chakraborty. 2000. A power analysis of microsatellite-based statistics for inferring past population growth. Mol. Biol. Evol. 17:1859-1868.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1859-1868
    • King, J.P.1    Kimmel, M.2    Chakraborty, R.3
  • 30
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • -. 1982b. On the genealogy of large populations. J. Appl. Prob. 19A:27-43.
    • (1982) J. Appl. Prob. , vol.19 A , pp. 27-43
  • 31
    • 0031835126 scopus 로고    scopus 로고
    • Maximum likelihood estimation of population growth rates based on the coalescent
    • Kuhner, M. K., J. Yamato, and J. Felsenstein. 1998. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149:429-434.
    • (1998) Genetics , vol.149 , pp. 429-434
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 33
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith, J., and J. Haigh. 1974. The hitch-hiking effect of a favourable gene. Genet. Res. 23:23-35.
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 34
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • D. J. Balding, M. Bishop, and C. Cannings, eds. John Wiley and Sons, West Sussex, U.K
    • Nordborg, M. 2001. Coalescent theory. Pp. 179-212 in D. J. Balding, M. Bishop, and C. Cannings, eds. Handbook of Statistical Genetics. John Wiley and Sons, West Sussex, U.K.
    • (2001) Handbook of Statistical Genetics , pp. 179-212
    • Nordborg, M.1
  • 36
    • 0032959286 scopus 로고    scopus 로고
    • Statistical properties of two tests that use multilocus data sets to detect population expansions
    • Reich, D. E., M. W. Feldman, and D. B. Goldstein. 1999. Statistical properties of two tests that use multilocus data sets to detect population expansions. Mol. Biol. Evol. 16: 453-466.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 453-466
    • Reich, D.E.1    Feldman, M.W.2    Goldstein, D.B.3
  • 37
    • 0032493379 scopus 로고    scopus 로고
    • Genetic evidence for a paleolithic human population expansion in Africa
    • Reich, D. E., and D. B. Goldstein. 1998. Genetic evidence for a paleolithic human population expansion in Africa. Proc. Natl. Acad. Sci. USA 95:8119-8123.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 8119-8123
    • Reich, D.E.1    Goldstein, D.B.2
  • 38
    • 0000621581 scopus 로고
    • Genetic evidence for a pleistocene population explosion
    • Rogers, A. R. 1995. Genetic evidence for a pleistocene population explosion. Evolution 49:608-615.
    • (1995) Evolution , vol.49 , pp. 608-615
    • Rogers, A.R.1
  • 39
    • 0002624959 scopus 로고    scopus 로고
    • Population structure and modern human origins
    • P. Donnelly and S. Tavaré, eds. Springer-Verlag, New York
    • -. 1997. Population structure and modern human origins. Pp. 55-79 in P. Donnelly and S. Tavaré, eds. Progress in Population Genetics and Human Evolution. Springer-Verlag, New York.
    • (1997) Progress in Population Genetics and Human Evolution , pp. 55-79
  • 41
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers, A. R., and H. C. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9:552-569.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.C.2
  • 42
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas, J., and R. Rozas. 1999. DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 43
    • 0032919968 scopus 로고    scopus 로고
    • Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura
    • Rozas, J., C. Segarra, G. Ribó, and M. Aguadé. 1999. Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics 151:189-202.
    • (1999) Genetics , vol.151 , pp. 189-202
    • Rozas, J.1    Segarra, C.2    Ribó, G.3    Aguadé, M.4
  • 44
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNA polymorphism data
    • Simonsen, K. L., G. A. Churchill, and C. F. Aquadro. 1995. Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141:413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 45
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • Slatkin, M., and R. R. Hudson. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 46
    • 0002242481 scopus 로고    scopus 로고
    • Inference under the coalescent theory
    • D. J. Balding, M. Bishop, and C. Cannings, eds. John Wiley and Sons, West Sussex, U.K
    • Stephens, M. 2001. Inference under the coalescent theory. Pp. 213-238 in D. J. Balding, M. Bishop, and C. Cannings, eds. Handbook of Statistical Genetics. John Wiley and Sons, West Sussex, U.K.
    • (2001) Handbook of Statistical Genetics , pp. 213-238
    • Stephens, M.1
  • 47
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. 1989a. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 48
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • -. 1989b. The effect of change in population size on DNA polymorphism. Genetics 123:597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
  • 49
    • 0030467030 scopus 로고    scopus 로고
    • Neutral theory of molecular evolution
    • Takahata, N. 1996. Neutral theory of molecular evolution. Curr. Opin. Genet. Dev. 6:767-772.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 767-772
    • Takahata, N.1
  • 50
    • 0031014291 scopus 로고    scopus 로고
    • Inferring coalescence times for molecular sequence data
    • Tavaré, S., D. Balding, R. C. Griffiths, and P. Donnelly. 1997. Inferring coalescence times for molecular sequence data. Genetics 145:505-518.
    • (1997) Genetics , vol.145 , pp. 505-518
    • Tavaré, S.1    Balding, D.2    Griffiths, R.C.3    Donnelly, P.4
  • 51
    • 0032884643 scopus 로고    scopus 로고
    • Recombination and the power of statistical tests of neutrality
    • Wall, J. D. 1999. Recombination and the power of statistical tests of neutrality. Genet. Res. 74:65-79.
    • (1999) Genet. Res. , vol.74 , pp. 65-79
    • Wall, J.D.1
  • 52
    • 0034984837 scopus 로고    scopus 로고
    • Coalescent simulations and statistical tests of neutrality
    • Wall, J. D., and R. R. Hudson. 2001. Coalescent simulations and statistical tests of neutrality. Mol. Biol. Evol. 18:1134-1135.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1134-1135
    • Wall, J.D.1    Hudson, R.R.2
  • 53
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson, G. A. 1975. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7:256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 54
    • 0031827528 scopus 로고    scopus 로고
    • Inference of population history using a likelihood approach
    • Weiss, G., and A. Von Haeseler. 1998. Inference of population history using a likelihood approach. Genetics 149: 1539-1546.
    • (1998) Genetics , vol.149 , pp. 1539-1546
    • Weiss, G.1    Von Haeseler, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.