-
1
-
-
38349002986
-
Post-SELEX chemical optimization of a trypano-some-specific RNA aptamer
-
ADLER, A., FORSTER, N., HOMANN, M., and GORINGER, H.U. (2008). Post-SELEX chemical optimization of a trypano-some-specific RNA aptamer. Comb. Chem. High Throughput Screen. 11, 16-23.
-
(2008)
Comb. Chem. High Throughput Screen.
, vol.11
, pp. 16-23
-
-
Adler, A.1
Forster, N.2
Homann, M.3
Goringer, H.U.4
-
2
-
-
58249096725
-
Characterizing ribonucleases in vitro examples of synergies between biochemical and structural analysis
-
ARRAIANO, C.M., BARBAS, A., and AMBLAR, M. (2008). Characterizing ribonucleases in vitro examples of synergies between biochemical and structural analysis. Methods En-zymol. 447, 131-160.
-
(2008)
Methods En-zymol
, vol.447
, pp. 131-160
-
-
Arraiano, C.M.1
Barbas, A.2
Amblar, M.3
-
3
-
-
0035121494
-
Cloning, expression, genomic localization, and enzymatic activities of the mouse homolog of prostate-specific membrane antigen/NAALADase/folate hydrolase
-
DOI 10.1007/s003350010240
-
BACICH,D.J.,PINTO,J.T.,TONG,W.P.,andHESTON,W.D. (2001). Cloning, expression, genomic localization, and enzymatic activities of the mouse homolog of prostate-specific membrane antigen/NAALADase/folate hydrolase. Mamm. Genome 12, 117-123. (Pubitemid 32147666)
-
(2001)
Mammalian Genome
, vol.12
, Issue.2
, pp. 117-123
-
-
Bacich, D.J.1
Pinto, J.T.2
Tong, W.P.3
Heston, W.D.W.4
-
4
-
-
33845723241
-
An aptamer-doxorubicin physical conjugate as a novel targeted drug-delivery platform
-
DOI 10.1002/anie.200602251
-
BAGALKOT, V., FAROKHZAD, O.C., LANGER, R., and JON, S. (2006). An aptamer-doxorubicin physical conjugate as a novel targeted drug-delivery platform. Angew. Chem. Int. Ed. Engl. 45, 8149-8152. (Pubitemid 44974149)
-
(2006)
Angewandte Chemie - International Edition
, vol.45
, Issue.48
, pp. 8149-8152
-
-
Bagalkot, V.1
Farokhzad, O.C.2
Langer, R.3
Jon, S.4
-
5
-
-
0033062077
-
Derivation of RNA aptamer inhibitors of human complement C5
-
DOI 10.1016/S0162-3109(99)00020-X, PII S016231099900020X
-
BIESECKER, G., DIHEL, L., ENNEY, K., and BENDELE, R.A. (1999). Derivation of RNA aptamer inhibitors of human complement C5. Immunopharmacology 42, 219-230. (Pubitemid 29322305)
-
(1999)
Immunopharmacology
, vol.42
, Issue.1-3
, pp. 219-230
-
-
Biesecker, G.1
Dihel, L.2
Enney, K.3
Bendele, R.A.4
-
6
-
-
77951230568
-
Dependence of aptamer activity on opposed terminal extensions: Improvement of light-regulation efficiency
-
BUFF, M.C., SCHAFER, F., WULFFEN, B., MULLER, J., POTZSCH, B., HECKEL, A., and MAYER, G. (2010). Dependence of aptamer activity on opposed terminal extensions: improvement of light-regulation efficiency. Nucleic Acids Res. 38, 2111-2118.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2111-2118
-
-
Buff, M.C.1
Schafer, F.2
Wulffen, B.3
Muller, J.4
Potzsch, B.5
Heckel, A.6
Mayer, G.7
-
7
-
-
0028874701
-
Structural probing and damage selection of citrulline-and arginine-specific RNA aptamers identify base positions required for binding
-
BURGSTALLER, P., KOCHOYAN, M., and FAMULOK, M. (1995). Structural probing and damage selection of citrulline-and arginine-specific RNA aptamers identify base positions required for binding. Nucleic Acids Res. 23, 4769-4776.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4769-4776
-
-
Burgstaller, P.1
Kochoyan, M.2
Famulok, M.3
-
8
-
-
19944428130
-
Direct in vitro selection of a 2′-O-methyl aptamer to VEGF
-
DOI 10.1016/j.chembiol.2004.10.017, PII S1074552104003357
-
BURMEISTER, P.E., LEWIS, S.D., SILVA, R.F., PREISS, J.R., HORWITZ, L.R., PENDERGRAST, P.S., MCCAULEY, T.G., KURZ, J.C., EPSTEIN, D.M., WILSON, C., and KEEFE, A.D. (2005). Direct in vitro selection of a 2'-O-methyl aptamer to VEGF. Chem. Biol. 12, 25-33. (Pubitemid 40118323)
-
(2005)
Chemistry and Biology
, vol.12
, Issue.1
, pp. 25-33
-
-
Burmeister, P.E.1
Lewis, S.D.2
Silva, R.F.3
Preiss, J.R.4
Horwitz, L.R.5
Pendergrast, P.S.6
McCauley, T.G.7
Kurz, J.C.8
Epstein, D.M.9
Wilson, C.10
Keefe, A.D.11
-
9
-
-
33845939367
-
2′-deoxy purine, 2′-O-methyl pyrimidine (dRmY) aptamers as candidate therapeutics
-
DOI 10.1089/oli.2006.16.337
-
BURMEISTER, P.E., WANG, C., KILLOUGH, J.R., LEWIS, S.D., HORWITZ, L.R., FERGUSON, A., THOMPSON, K.M., PEN-DERGRAST, P.S., MCCAULEY, T.G., KURZ, M., DIENER, J., CLOAD, S.T., WILSON, C., and KEEFE, A.D. (2006). 2'-Deoxy purine, 2'-O-methyl pyrimidine (dRmY) aptamers as candidate therapeutics. Oligonucleotides 16, 337-351. (Pubitemid 46034477)
-
(2006)
Oligonucleotides
, vol.16
, Issue.4
, pp. 337-351
-
-
Burmeister, P.E.1
Wang, C.2
Killough, J.R.3
Lewis, S.D.4
Horwitz, L.R.5
Ferguson, A.6
Thompson, K.M.7
Pendergrast, P.S.8
McCauley, T.G.9
Kurz, M.10
Diener, J.11
Cload, S.T.12
Wilson, C.13
Keefe, A.D.14
-
10
-
-
28344438036
-
Predicting RNA folding thermodynamics with a reduced chain representation model
-
DOI 10.1261/rna.2109105
-
CAO, S., and CHEN, S.J. (2005). Predicting RNA folding thermodynamics with a reduced chain representation model. RNA 11, 1884-1897. (Pubitemid 41720037)
-
(2005)
RNA
, vol.11
, Issue.12
, pp. 1884-1897
-
-
Cao, S.1
Chen, S.-J.2
-
11
-
-
33644779957
-
Free energy landscapes of RNA/RNA complexes: With applications to snRNA complexes in spliceosomes
-
DOI 10.1016/j.jmb.2005.12.014, PII S0022283605015743
-
CAO, S., and CHEN, S.J. (2006). Free energy landscapes of RNA/RNA complexes: with applications to snRNA complexes in spliceosomes. J. Mol. Biol. 357, 292-312. (Pubitemid 43339332)
-
(2006)
Journal of Molecular Biology
, vol.357
, Issue.1
, pp. 292-312
-
-
Cao, S.1
Chen, S.-J.2
-
12
-
-
68049147448
-
A new computational approach for mechanical folding kinetics of RNA hairpins
-
CAO, S., and CHEN, S.J. (2009). A new computational approach for mechanical folding kinetics of RNA hairpins. Biophys. J. 96, 4024-4034.
-
(2009)
Biophys. J.
, vol.96
, pp. 4024-4034
-
-
Cao, S.1
Chen, S.J.2
-
13
-
-
79953795893
-
Physics-based de novo prediction of RNA 3D structures
-
CAO, S., and CHEN, S.J. (2011). Physics-based de novo prediction of RNA 3D structures. J. Phys. Chem. B 115, 4216-4226.
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 4216-4226
-
-
Cao, S.1
Chen, S.J.2
-
14
-
-
77958466480
-
Folding kinetics for the conformational switch between alternative RNA structures
-
CAO, S., FURTIG, B., SCHWALBE, H., and CHEN, S.J. (2010). Folding kinetics for the conformational switch between alternative RNA structures. J. Phys. Chem. B 114, 13609-13615.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 13609-13615
-
-
Cao, S.1
Furtig, B.2
Schwalbe, H.3
Chen, S.J.4
-
15
-
-
70349898026
-
Reversible cell-specific drug delivery with aptamer-functionalized liposomes
-
CAO, Z., TONG, R., MISHRA, A., XU, W., WONG, G.C., CHENG, J., and LU, Y. (2009). Reversible cell-specific drug delivery with aptamer-functionalized liposomes. Angew. Chem. Int. Ed. Engl. 48, 6494-6498.
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 6494-6498
-
-
Cao, Z.1
Tong, R.2
Mishra, A.3
W, X.U.4
Wong, G.C.5
Cheng, J.6
Y, L.U.7
-
16
-
-
23444454552
-
The Amber biomolecular simulation programs
-
DOI 10.1002/jcc.20290
-
CASE, D.A., CHEATHAM, T.E., 3rd, DARDEN, T., GOHLKE, H., LUO, R., MERZ, K.M., JR., ONUFRIEV, A., SIMMER-LING, C., WANG, B., and WOODS, R.J. (2005). The Amber biomolecular simulation programs. J. Comput. Chem. 26, 1668-1688. (Pubitemid 43076180)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
17
-
-
34247562266
-
Year 2 efficacy results of 2 randomized controlled clinical trials of pegaptanib for neovascular age-related mac-ular degeneration
-
CHAKRAVARTHY, U., ADAMIS, A.P., CUNNINGHAM, E.T., JR., GOLDBAUM, M., GUYER, D.R., KATZ, B., and PATEL, M. (2006). Year 2 efficacy results of 2 randomized controlled clinical trials of pegaptanib for neovascular age-related mac-ular degeneration. Ophthalmology 113, 1508, e1501-e1525.
-
(2006)
Ophthalmology
, vol.113
, Issue.1508
-
-
Chakravarthy, U.1
Adamis, A.P.2
Cunningham Jr., E.T.3
Goldbaum, M.4
Guyer, D.R.5
Katz, B.6
Patel, M.7
-
18
-
-
42449155819
-
RNA folding: Conformational statistics, folding kinetics, and ion electrostatics
-
CHEN, S.J. (2008). RNA folding: conformational statistics, folding kinetics, and ion electrostatics. Annu. Rev. Biophys. 37, 197-214.
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 197-214
-
-
Chen, S.J.1
-
19
-
-
33745128099
-
Aptamer mediated siRNA delivery
-
CHU, T.C., TWU, K.Y., ELLINGTON, A.D., and LEVY, M. (2006). Aptamer mediated siRNA delivery. Nucleic Acids Res. 34, e73.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Chu, T.C.1
Twu, K.Y.2
Ellington, A.D.3
Levy, M.4
-
20
-
-
84864281271
-
The prostate specific membrane antigen regulates the expression of IL-6 and CCL5 in prostate tumour cells by activating the MAPK pathways
-
COLOMBATTI, M., GRASSO, S., PORZIA, A., FRACASSO, G., SCUPOLI, M.T., CINGARLINI, S., POFFE, O., NAIM, H.Y., HEINE, M., TRIDENTE, G., MAINIERO, F., and RAMARLI, D. (2009). The prostate specific membrane antigen regulates the expression of IL-6 and CCL5 in prostate tumour cells by activating the MAPK pathways. PLoS One 4, e4608.
-
(2009)
PLoS One
, vol.4
-
-
Colombatti, M.1
Grasso, S.2
Porzia, A.3
Fracasso, G.4
Scupoli, M.T.5
Cingarlini, S.6
Poffe, O.7
Naim, H.Y.8
Heine, M.9
Tridente, G.10
Mainiero, F.11
Ramarli, D.12
-
21
-
-
67650236718
-
ARC-1779, a PEGylated aptamer antagonist of von Willebrand factor for potential use as an anticoagulant or antithrombotic agent
-
COSMI, B. (2009). ARC-1779, a PEGylated aptamer antagonist of von Willebrand factor for potential use as an anticoagulant or antithrombotic agent. Curr. Opin. Mol. Ther. 11, 322-328.
-
(2009)
Curr. Opin. Mol. Ther.
, vol.11
, pp. 322-328
-
-
Cosmi, B.1
-
22
-
-
67650727366
-
VARNA: Interactive drawing and editing of the RNA secondary structure
-
DARTY, K., DENISE, A., and PONTY, Y. (2009). VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25, 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
23
-
-
70249110439
-
Systemic administration of optimized aptamer-siRNA chimeras promotes regression of PSMA-ex-pressing tumors
-
DASSIE, J.P., LIU, X.Y., THOMAS, G.S., WHITAKER, R.M., THIEL, K.W., STOCKDALE, K.R., MEYERHOLZ, D.K., MCCAFFREY, A.P., MCNAMARA, J.O., 2nd, and GIAN-GRANDE, P.H. (2009). Systemic administration of optimized aptamer-siRNA chimeras promotes regression of PSMA-ex-pressing tumors. Nat. Biotechnol. 27, 839-849.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 839-849
-
-
Dassie, J.P.1
Liu, X.Y.2
Thomas, G.S.3
Whitaker, R.M.4
Thiel, K.W.5
Stockdale, K.R.6
Meyerholz, D.K.7
McCaffrey, A.P.8
Mcnamara II, J.O.9
Gian-Grande, P.H.10
-
24
-
-
17844406390
-
Crystal structure of prostate-specific membrane antigen, a tumor marker and peptidase
-
DOI 10.1073/pnas.0502101102
-
DAVIS, M.I., BENNETT, M.J., THOMAS, L.M., and BJORK-MAN, P.J. (2005). Crystal structure of prostate-specific membrane antigen, a tumor marker and peptidase. Proc. Natl. Acad. Sci. U. S. A. 102, 5981-5986. (Pubitemid 40594241)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.17
, pp. 5981-5986
-
-
Davis, M.I.1
Bennett, M.J.2
Thomas, L.M.3
Bjorkman, P.J.4
-
25
-
-
56249097260
-
Targeted delivery of cisplatin to prostate cancer cells by aptamer functionalized Pt(IV) prodrug-PLGA-PEG nanoparticles
-
DHAR, S., GU, F.X., LANGER, R., FAROKHZAD, O.C., and LIPPARD, S.J. (2008). Targeted delivery of cisplatin to prostate cancer cells by aptamer functionalized Pt(IV) prodrug-PLGA-PEG nanoparticles. Proc. Natl. Acad. Sci. U. S. A. 105, 17356-17361.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 17356-17361
-
-
Dhar, S.1
X, G.U.F.2
Langer, R.3
Farokhzad, O.C.4
Lippard, S.J.5
-
26
-
-
79952165883
-
Targeted delivery of a cisplatin prodrug for safer and more effective prostate cancer therapy in vivo
-
DHAR, S., KOLISHETTI, N., LIPPARD, S.J., and FAROKHZAD, O.C. (2011). Targeted delivery of a cisplatin prodrug for safer and more effective prostate cancer therapy in vivo. Proc. Natl. Acad. Sci. U. S. A. 108, 1850-1855.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 1850-1855
-
-
Dhar, S.1
Kolishetti, N.2
Lippard, S.J.3
Farokhzad, O.C.4
-
27
-
-
33845388596
-
First-in-human experience of an antidote-controlled anticoagulant using RNA aptamer technology: A phase 1a pharmacodynamic evaluation of a drug-antidote pair for the controlled regulation of factor IXa activity
-
DOI 10.1161/CIRCULATIONAHA.106.668434, PII 0000301720061205000012
-
DYKE, C.K., STEINHUBL, S.R., KLEIMAN, N.S., CANNON, R.O., ABERLE, L.G., LIN, M., MYLES, S.K., MELLONI, C., HARRINGTON, R.A., ALEXANDER, J.H., BECKER, R.C., and RUSCONI, C.P. (2006). First-in-human experience of an antidote-controlled anticoagulant using RNA aptamer technology: a phase 1a pharmacodynamic evaluation of a drug-antidote pair for the controlled regulation of factor IXa activity. Circulation 114, 2490-2497. (Pubitemid 44901522)
-
(2006)
Circulation
, vol.114
, Issue.23
, pp. 2490-2497
-
-
Dyke, C.K.1
Steinhubl, S.R.2
Kleiman, N.S.3
Cannon, R.O.4
Aberle, L.G.5
Lin, M.6
Myles, S.K.7
Melloni, C.8
Harrington, R.A.9
Alexander, J.H.10
Becker, R.C.11
Rusconi, C.P.12
-
28
-
-
77649125820
-
Coagulation factor IXa as a target for treatment and prophylaxis of venous thromboembolism
-
EIKELBOOM, J.W., ZELENKOFSKE, S.L., and RUSCONI, C.P. (2010). Coagulation factor IXa as a target for treatment and prophylaxis of venous thromboembolism. Arterioscler. Thromb. Vasc. Biol. 30, 382-387.
-
(2010)
Arterioscler. Thromb. Vasc. Biol.
, vol.30
, pp. 382-387
-
-
Eikelboom, J.W.1
Zelenkofske, S.L.2
Rusconi, C.P.3
-
29
-
-
0025074907
-
Vitro selection of RNA molecules that bind specific ligands
-
ELLINGTON, A.D., and SZOSTAK, J.W. (1990). In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
30
-
-
7444223607
-
Nanoparticle-aptamer bioconjugates: A new approach for targeting prostate cancer cells
-
DOI 10.1158/0008-5472.CAN-04-2550
-
FAROKHZAD, O.C., JON, S., KHADEMHOSSEINI, A., TRAN, T.N., LAVAN, D.A., and LANGER, R. (2004). Nanoparticle-aptamer bioconjugates: a new approach for targeting prostate cancer cells. Cancer Res. 64, 7668-7672. (Pubitemid 39446893)
-
(2004)
Cancer Research
, vol.64
, Issue.21
, pp. 7668-7672
-
-
Farokhzad, O.C.1
Jon, S.2
Khademhosseini, A.3
Tran, T.-N.T.4
LaVan, D.A.5
Langer, R.6
-
31
-
-
0032896149
-
Novel approach to specific growth factor inhibition in vivo: Antagonism of platelet-derived growth factor in glomerulonephritis by aptamers
-
FLOEGE, J., OSTENDORF, T., JANSSEN, U., BURG, M., RA-DEKE, H.H., VARGEESE, C., GILL, S.C., GREEN, L.S., and JANJIC, N. (1999). Novel approach to specific growth factor inhibition in vivo: antagonism of platelet-derived growth factor in glomerulonephritis by aptamers. Am. J. Pathol. 154, 169-179. (Pubitemid 29031624)
-
(1999)
American Journal of Pathology
, vol.154
, Issue.1
, pp. 169-179
-
-
Floege, J.1
Ostendorf, T.2
Janssen, U.3
Burg, M.4
Radeke, H.H.5
Vargeese, C.6
Gill, S.C.7
Green, L.S.8
Janjic, N.9
-
32
-
-
37349040378
-
First-in-human evaluation of anti-von Willebrand factor therapeutic aptamer ARC1779 in healthy volunteers
-
DOI 10.1161/CIRCULATIONAHA.107.724864
-
GILBERT, J.C., DEFEO-FRAULINI, T., HUTABARAT, R.M., HORVATH, C.J., MERLINO, P.G., MARSH, H.N., HEALY, J.M., BOUFAKHREDDINE, S., HOLOHAN, T.V., and SCHAUB, R.G. (2007). First-in-human evaluation of anti von Willebrand factor therapeutic aptamer ARC1779 in healthy volunteers. Circulation 116, 2678-2686. (Pubitemid 350291240)
-
(2007)
Circulation
, vol.116
, Issue.23
, pp. 2678-2686
-
-
Gilbert, J.C.1
DeFeo-Fraulini, T.2
Hutabarat, R.M.3
Horvath, C.J.4
Merlino, P.G.5
Marsh, H.N.6
Healy, J.M.7
BouFakhreddine, S.8
Holohan, T.V.9
Schaub, R.G.10
-
33
-
-
11144239923
-
Pegaptanib for neovascular age-related macular degeneration
-
DOI 10.1056/NEJMoa042760
-
GRAGOUDAS, E.S., ADAMIS, A.P., CUNNINGHAM, E.T., JR., FEINSOD, M., and GUYER, D.R. (2004). Pegaptanib for neo-vascular age-related macular degeneration. N. Engl. J. Med. 351, 2805-2816. (Pubitemid 40051904)
-
(2004)
New England Journal of Medicine
, vol.351
, Issue.27
, pp. 2805-2816
-
-
Gragoudas, E.S.1
Adamis, A.P.2
Cunningham Jr., E.T.3
Feinsod, M.4
Guyer, D.R.5
-
34
-
-
0028960472
-
Comprehensive chemical modification interference and nucleotide substitution analysis of an RNA pseudoknot inhibitor to HIV-1 reverse transcriptase
-
GREEN, L., WAUGH, S., BINKLEY, J.P., HOSTOMSKA, Z., HOSTOMSKY, Z., and TUERK, C. (1995). Comprehensive chemical modification interference and nucleotide substitution analysis of an RNA pseudoknot inhibitor to HIV-1 reverse transcriptase. J. Mol. Biol. 247, 60-68.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 60-68
-
-
Green, L.1
Waugh, S.2
Binkley, J.P.3
Hostomska, Z.4
Hostomsky, Z.5
Tuerk, C.6
-
35
-
-
40649105534
-
Precise engineering of targeted nanoparticles by using self-assembled biointegrated block copolymers
-
DOI 10.1073/pnas.0711714105
-
GU, F., ZHANG, L., TEPLY, B.A., MANN, N., WANG, A., RADOVIC-MORENO, A.F., LANGER, R., and FAROKHZAD, O.C. (2008). Precise engineering of targeted nanoparticles by using self-assembled biointegrated block copolymers. Proc. Natl. Acad. Sci. U. S. A. 105, 2586-2591. (Pubitemid 351520557)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.7
, pp. 2586-2591
-
-
Gu, F.1
Zhang, L.2
Teply, B.A.3
Mann, N.4
Wang, A.5
Radovic-Moreno, A.F.6
Langer, R.7
Farokhzad, O.C.8
-
36
-
-
17644399512
-
Pharmacokinetics and biodistribution of novel aptamer compositions
-
DOI 10.1007/s11095-004-7676-4
-
HEALY, J.M., LEWIS, S.D., KURZ, M., BOOMER, R.M., THOMPSON, K.M., WILSON, C., and MCCAULEY, T.G. (2004). Pharmacokinetics and biodistribution of novel aptamer compositions. Pharm. Res. 21, 2234-2246. (Pubitemid 40568437)
-
(2004)
Pharmaceutical Research
, vol.21
, Issue.12
, pp. 2234-2246
-
-
Healy, J.M.1
Lewis, S.D.2
Kurz, M.3
Boomer, R.M.4
Thompson, K.M.5
Wilson, C.6
McCauley, T.G.7
-
37
-
-
71749097854
-
Aptamers as a model for functional evaluation of LNA and 2'-amino LNA
-
HERNANDEZ, F.J., KALRA, N., WENGEL, J., and VESTER, B. (2009). Aptamers as a model for functional evaluation of LNA and 2'-amino LNA. Bioorg. Med. Chem. Lett. 19, 6585-6587.
-
(2009)
Bioorg. Med. Chem. Lett.
, vol.19
, pp. 6585-6587
-
-
Hernandez, F.J.1
Kalra, N.2
Wengel, J.3
Vester, B.4
-
38
-
-
33745108827
-
Tumor targeting by an aptamer
-
HICKE, B.J., STEPHENS, A.W., GOULD, T., CHANG, Y.F., LYNOTT, C.K., HEIL, J., BORKOWSKI, S., HILGER, C.S., COOK, G., WARREN, S., and SCHMIDT, P.G. (2006). Tumor targeting by an aptamer. J. Nucl. Med. 47, 668-678. (Pubitemid 46768469)
-
(2006)
Journal of Nuclear Medicine
, vol.47
, Issue.4
, pp. 668-678
-
-
Hicke, B.J.1
Stephens, A.W.2
Gould, T.3
Chang, Y.-F.4
Lynott, C.K.5
Heil, J.6
Borkowski, S.7
Hilger, C.-S.8
Cook, G.9
Warren, S.10
Schmidt, P.G.11
-
39
-
-
0030854581
-
Mechanism of ribose 2'-group discrimination by an RNA polymerase
-
DOI 10.1021/bi962674l
-
HUANG, Y., ECKSTEIN, F., PADILLA, R., and SOUSA, R. (1997). Mechanism of ribose 2'-group discrimination by an RNA polymerase. Biochemistry 36, 8231-8242. (Pubitemid 27297532)
-
(1997)
Biochemistry
, vol.36
, Issue.27
, pp. 8231-8242
-
-
Huang, Y.1
Eckstein, F.2
Padilla, R.3
Sousa, R.4
-
40
-
-
46449084711
-
An iterative knowledge-based scoring function for protein-protein recognition
-
DOI 10.1002/prot.21949
-
HUANG, S.Y., and ZOU, X. (2008). An iterative knowledge-based scoring function for protein-protein recognition. Proteins 72, 557-579. (Pubitemid 351928512)
-
(2008)
Proteins: Structure, Function and Genetics
, vol.72
, Issue.2
, pp. 557-579
-
-
Huang, S.-Y.1
Zou, X.2
-
41
-
-
77957934483
-
MDockPP: A hierarchical approach for protein-protein docking and its application to CAPRI rounds 15-19
-
HUANG, S.Y., and ZOU, X. (2010). MDockPP: A hierarchical approach for protein-protein docking and its application to CAPRI rounds 15-19. Proteins 78, 3096-3103.
-
(2010)
Proteins
, vol.78
, pp. 3096-3103
-
-
Huang, S.Y.1
Zou, X.2
-
42
-
-
0029114788
-
Potent 2'-amino-2'-deoxypyrimidine RNA inhibitors of basic fibroblast growth factor
-
JELLINEK, D., GREEN, L.S., BELL, C., LYNOTT, C.K., GILL, N., VARGEESE, C., KIRSCHENHEUTER, G., MCGEE, D.P., ABESINGHE, P., PIEKEN, W.A., et al. (1995). Potent 2'-amino-2'-deoxypyrimidine RNA inhibitors of basic fibroblast growth factor. Biochemistry 34, 11363-11372.
-
(1995)
Biochemistry
, vol.34
, pp. 11363-11372
-
-
Jellinek, D.1
Green, L.S.2
Bell, C.3
Lynott, C.K.4
Gill, N.5
Vargeese, C.6
Kirschenheuter, G.7
McGee, D.P.8
Abesinghe, P.9
Pieken, W.A.10
-
43
-
-
38049048268
-
Exploring the sequence space of a DNA aptamer using mi-croarrays
-
KATILIUS, E., FLORES, C., and WOODBURY, N.W. (2007). Exploring the sequence space of a DNA aptamer using mi-croarrays. Nucleic Acids Res. 35, 7626-7635.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7626-7635
-
-
Katilius, E.1
Flores, C.2
Woodbury, N.W.3
-
44
-
-
0028949238
-
Stability, specific binding activity, and plasma concentration in mice of an oligodeoxynucleotide modified at 5'-terminal with poly(ethylene glycol)
-
KAWAGUCHI, T., ASAKAWA, H., TASHIRO, Y., JUNI, K., and SUEISHI, T. (1995). Stability, specific binding activity, and plasma concentration in mice of an oligodeoxynucleotide modified at 5'-terminal with poly(ethylene glycol). Biol. Pharm. Bull. 18, 474-476.
-
(1995)
Biol. Pharm. Bull.
, vol.18
, pp. 474-476
-
-
Kawaguchi, T.1
Asakawa, H.2
Tashiro, Y.3
Juni, K.4
Sueishi, T.5
-
45
-
-
77955128541
-
Aptamers as therapeutics
-
KEEFE, A.D., PAI, S., and ELLINGTON, A. (2010). Aptamers as therapeutics. Nat. Rev. Drug Discov. 9, 537-550.
-
(2010)
Nat. Rev. Drug Discov.
, vol.9
, pp. 537-550
-
-
Keefe, A.D.1
Pai, S.2
Ellington, A.3
-
46
-
-
67249157547
-
Prostate-specific membrane antigen targeted imaging and therapy of prostate cancer using a PSMA inhibitor as a homing ligand
-
KULARATNE, S.A., WANG, K., SANTHAPURAM, H.K., and LOW, P.S. (2009). Prostate-specific membrane antigen targeted imaging and therapy of prostate cancer using a PSMA inhibitor as a homing ligand. Mol. Pharm. 6, 780-789.
-
(2009)
Mol. Pharm.
, vol.6
, pp. 780-789
-
-
Kularatne, S.A.1
Wang, K.2
Santhapuram, H.K.3
Low, P.S.4
-
47
-
-
0033674466
-
Prostate-specific membrane antigen (PSMA) enzyme activity is elevated in prostate cancer cells
-
LAPIDUS, R.G., TIFFANY, C.W., ISAACS, J.T., and SLUSHER, B.S. (2000). Prostate-specific membrane antigen (PSMA) enzyme activity is elevated in prostate cancer cells. Prostate 45, 350-354.
-
(2000)
Prostate
, vol.45
, pp. 350-354
-
-
Lapidus, R.G.1
Tiffany, C.W.2
Isaacs, J.T.3
Slusher, B.S.4
-
48
-
-
0028641549
-
Modified RNA sequence pools for in vitro selection
-
LIN, Y., QIU, Q., GILL, S.C., and JAYASENA, S.D. (1994). Modified RNA sequence pools for in vitro selection. Nucleic Acids Res. 22, 5229-5234.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5229-5234
-
-
Lin, Y.1
Qiu, Q.2
Gill, S.C.3
Jayasena, S.D.4
-
49
-
-
0037099536
-
Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen
-
LUPOLD, S.E., HICKE, B.J., LIN, Y., and COFFEY, D.S. (2002). Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen. Cancer Res. 62, 4029-4033. (Pubitemid 34791070)
-
(2002)
Cancer Research
, vol.62
, Issue.14
, pp. 4029-4033
-
-
Lupold, S.E.1
Hicke, B.J.2
Lin, Y.3
Coffey, D.S.4
-
50
-
-
67449156722
-
RNA secondary structure analysis using RNA structure
-
Chapter 12, Unit 12.6
-
MATHEWS, D.H. (2006). RNA secondary structure analysis using RNA structure. Curr. Protoc. Bioinform. Chapter 12, Unit 12.6.
-
(2006)
Curr. Protoc. Bioinform
-
-
Mathews, D.H.1
-
51
-
-
48849094109
-
RNA secondary structure prediction
-
Chapter 11, Unit 11.2
-
MATHEWS, D.H., TURNER, D.H., and ZUKER, M. (2007). RNA secondary structure prediction. Curr. Protoc. Nucleic Acid Chem. Chapter 11, Unit 11.2.
-
(2007)
Curr. Protoc. Nucleic Acid Chem
-
-
Mathews, D.H.1
Turner, D.H.2
Zuker, M.3
-
52
-
-
33747031960
-
Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras
-
DOI 10.1038/nbt1223, PII NBT1223
-
MCNAMARA, J.O., 2nd, ANDRECHEK, E.R., WANG, Y., VILES, K.D., REMPEL, R.E., GILBOA, E., SULLENGER, B.A., and GIANGRANDE, P.H. (2006). Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras. Nat. Biotechnol. 24, 1005-1015. (Pubitemid 44215395)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.8
, pp. 1005-1015
-
-
McNamara II, J.O.1
Andrechek, E.R.2
Wang, Y.3
Viles, K.D.4
Rempel, R.E.5
Gilboa, E.6
Sullenger, B.A.7
Giangrande, P.H.8
-
53
-
-
38149096315
-
Multivalent 4-1BB binding aptamers costimulate CD8+ T cells and inhibit tumor growth in mice
-
MCNAMARA, J.O., KOLONIAS, D., PASTOR, F., MITTLER, R.S., CHEN, L., GIANGRANDE, P.H., SULLENGER, B., and GILBOA, E. (2008). Multivalent 4-1BB binding aptamers costimulate CD8+ T cells and inhibit tumor growth in mice. J. Clin. Invest. 118, 376-386.
-
(2008)
J. Clin. Invest.
, vol.118
, pp. 376-386
-
-
McNamara, J.O.1
Kolonias, D.2
Pastor, F.3
Mittler, R.S.4
Chen, L.5
Giangrande, P.H.6
Sullenger, B.7
Gilboa, E.8
-
54
-
-
76749169748
-
AS-1411, a guano-sine-rich oligonucleotide aptamer targeting nucleolin for the potential treatment of cancer, including acute myeloid leukemia
-
MONGELARD, F., and BOUVET, P. (2010). AS-1411, a guano-sine-rich oligonucleotide aptamer targeting nucleolin for the potential treatment of cancer, including acute myeloid leukemia. Curr. Opin. Mol. Ther. 12, 107-114.
-
(2010)
Curr. Opin. Mol. Ther.
, vol.12
, pp. 107-114
-
-
Mongelard, F.1
Bouvet, P.2
-
55
-
-
78751667739
-
An aptamer-siRNA chimera suppresses HIV-1 viral loads and protects from helper CD4( + ) T cell decline in humanized mice
-
NEFF, C.P., ZHOU, J., REMLING, L., KURUVILLA, J., ZHANG, J., LI, H., SMITH, D.D., SWIDERSKI, P., ROSSI, J.J., and AK-KINA, R. (2011). An aptamer-siRNA chimera suppresses HIV-1 viral loads and protects from helper CD4( + ) T cell decline in humanized mice. Sci. Transl. Med. 3, 66ra6.
-
(2011)
Sci. Transl. Med.
, vol.3
-
-
Neff, C.P.1
Zhou, J.2
Remling, L.3
Kuruvilla, J.4
Zhang, J.5
H, L.I.6
Smith, D.D.7
Swiderski, P.8
Rossi, J.J.9
Ak-Kina, R.10
-
56
-
-
33845658622
-
Anti-VEGF aptamer (pegaptanib) therapy for ocular vascular diseases
-
DOI 10.1196/annals.1348.062, Oligonucleotide Therapeutics: First Annual Meeting of the Oligonucleotide Therapeutics Society
-
NG, E.W., and ADAMIS, A.P. (2006). Anti-VEGF aptamer (pe-gaptanib) therapy for ocular vascular diseases. Ann. N.Y. Acad. Sci. 1082, 151-171. (Pubitemid 44955460)
-
(2006)
Annals of the New York Academy of Sciences
, vol.1082
, pp. 151-171
-
-
Ng, E.W.M.1
Adamis, A.P.2
-
57
-
-
0033559119
-
Efficient synthesis of nucleic acids heavily modified with non-canonical ribose 2'-groups using a mutant T7 RNA polymerase (RNAP)
-
DOI 10.1093/nar/27.6.1561
-
PADILLA, R., and SOUSA, R. (1999). Efficient synthesis of nucleic acids heavily modified with non-canonical ribose 2'-groups using a mutantT7 RNA polymerase (RNAP). Nucleic Acids Res. 27, 1561-1563. (Pubitemid 29206303)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.6
, pp. 1561-1563
-
-
Padilla, R.1
Sousa, R.2
-
58
-
-
77952380547
-
Inductionoftumourimmunitybytargeted inhibitionof nonsense-mediated mRNA decay
-
PASTOR,F.,KOLONIAS,D.,GIANGRANDE,P.H.,and GILBOA, E.(2010). Inductionoftumourimmunitybytargeted inhibitionof nonsense-mediated mRNA decay. Nature, 465,227-230.
-
(2010)
Nature
, vol.465
, pp. 227-230
-
-
Pastor, F.1
Kolonias, D.2
Giangrande, P.H.3
Gilboa, E.4
-
59
-
-
27844454796
-
Oligo- and poly-nucleotides: 50 years of chemical synthesis
-
DOI 10.1039/b510458k
-
REESE, C.B. (2005). Oligo-and poly-nucleotides: 50 years of chemical synthesis. Org. Biomol. Chem. 3, 3851-3868. (Pubitemid 41640794)
-
(2005)
Organic and Biomolecular Chemistry
, vol.3
, Issue.21
, pp. 3851-3868
-
-
Reese, C.B.1
-
60
-
-
0032493654
-
165): Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain
-
DOI 10.1074/jbc.273.32.20556
-
RUCKMAN, J., GREEN, L.S., BEESON, J., WAUGH, S., GILLETTE, W.L., HENNINGER, D.D., CLAESSON-WELSH, L., and JANJIC, N. (1998). 2'-Fluoropyrimidine RNA-based ap-tamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain. J. Biol. Chem. 273, 20556-20567. (Pubitemid 28377626)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.32
, pp. 20556-20567
-
-
Ruckman, J.1
Green, L.S.2
Beeson, J.3
Waugh, S.4
Gillette, W.L.5
Henninger, D.D.6
Claesson-Welsh, L.7
Janjic, N.8
-
61
-
-
0037026484
-
RNA aptamers as reversible antagonists of coagulation factor IXa
-
DOI 10.1038/nature00963
-
RUSCONI, C.P., SCARDINO, E., LAYZER, J., PITOC, G.A., ORTEL, T.L., MONROE, D., and SULLENGER, B.A. (2002). RNA aptamers as reversible antagonists of coagulation factor IXa. Nature 419, 90-94. (Pubitemid 34987876)
-
(2002)
Nature
, vol.419
, Issue.6902
, pp. 90-94
-
-
Rusconi, C.P.1
Scardino, E.2
Layzer, J.3
Pitoc, G.A.4
Ortel, T.L.5
Monroe, D.6
Sullenger, B.A.7
-
62
-
-
0027180473
-
An RNA motif that binds ATP
-
DOI 10.1038/364550a0
-
SASSANFAR, M., and SZOSTAK, J.W. (1993). An RNA motif that binds ATP. Nature 364, 550-553. (Pubitemid 23273104)
-
(1993)
Nature
, vol.364
, Issue.6437
, pp. 550-553
-
-
Sassanfar, M.1
Szostak, J.W.2
-
63
-
-
0029100233
-
Predicting thermody-namic properties of RNA
-
SERRA, M.J., and TURNER, D.H. (1995). Predicting thermody-namic properties of RNA. Methods Enzymol. 259, 242-261.
-
(1995)
Methods Enzymol
, vol.259
, pp. 242-261
-
-
Serra, M.J.1
Turner, D.H.2
-
64
-
-
0031042591
-
Prostate-specific membrane antigen expression in normal and malignant human tissues
-
SILVER, D.A., PELLICER, I., FAIR, W.R., HESTON, W.D., and CORDON-CARDO, C. (1997). Prostate-specific membrane antigen expression in normal and malignant human tissues. Clin. Cancer Res. 3, 81-85. (Pubitemid 27079448)
-
(1997)
Clinical Cancer Research
, vol.3
, Issue.1
, pp. 81-85
-
-
Silver, D.A.1
Pellicer, I.2
Fair, W.R.3
Heston, W.D.W.4
Cordon-Cardo, C.5
-
65
-
-
79960558527
-
Affinity hydrogels for controlled protein release using nucleic acid aptamers and complementary oligonucleotides
-
SOONTORNWORAJIT, B., ZHOU, J., SNIPES, M.P., BATTIG, M.R., and WANG, Y. (2011). Affinity hydrogels for controlled protein release using nucleic acid aptamers and complementary oligonucleotides. Biomaterials 32, 6839-6849.
-
(2011)
Biomaterials
, vol.32
, pp. 6839-6849
-
-
Soontornworajit, B.1
Zhou, J.2
Snipes, M.P.3
Battig, M.R.4
Wang, Y.5
-
66
-
-
70349272617
-
Therapeutic applications of DNA and RNA aptamers
-
THIEL, K.W., and GIANGRANDE, P.H. (2009). Therapeutic applications of DNA and RNA aptamers. Oligonucleotides 19, 209-222.
-
(2009)
Oligonucleotides
, vol.19
, pp. 209-222
-
-
Thiel, K.W.1
Giangrande, P.H.2
-
67
-
-
0034057416
-
Anti-L-selectin aptamers: Binding characteristics, pharmacokinetic parameters, and activity against an intravascular target in vivo
-
WATSON, S.R., CHANG, Y.F., O'CONNELL, D., WEIGAND, L., RINGQUIST, S., and PARMA, D.H. (2000). Anti-L-selectin aptamers: binding characteristics, pharmacokinetic parameters, and activity against an intravascular target in vivo. An-tisense Nucleic Acid Drug Dev. 10, 63-75. (Pubitemid 30255590)
-
(2000)
Antisense and Nucleic Acid Drug Development
, vol.10
, Issue.2
, pp. 63-75
-
-
Watson, S.R.1
Chang, Y.-F.2
O'Connell, D.3
Weigand, L.4
Ringquist, S.5
Parma, D.H.6
-
69
-
-
0034042053
-
Generation of a baculovirus recombinant prostate-specific membrane antigen and its use in the development of a novel protein biochip quantitative immunoassay
-
DOI 10.1006/prep.2000.1222
-
XIAO, Z., JIANG, X., BECKETT, M.L., and WRIGHT, G.L., JR. (2000). Generation of a baculovirus recombinant prostate-specific membrane antigen and its use in the development of a novel protein biochip quantitative immunoassay. Protein Expr. Purif. 19, 12-21. (Pubitemid 30387889)
-
(2000)
Protein Expression and Purification
, vol.19
, Issue.1
, pp. 12-21
-
-
Xiao, Z.1
Jiang, X.2
Beckett, M.L.3
Wright Jr., G.L.4
-
70
-
-
75649098223
-
Expression of prostate-specific membrane antigen (PSMA), increases cell folate uptake and proliferation and suggests a novel role for PSMA in the uptake of the non-polyglutamated folate, folic acid
-
YAO, V., BERKMAN, C.E., CHOI, J.K., O'KEEFE, D.S., and BACICH, D.J. (2010). Expression of prostate-specific membrane antigen (PSMA), increases cell folate uptake and proliferation and suggests a novel role for PSMA in the uptake of the non-polyglutamated folate, folic acid. Prostate 70, 305-316.
-
(2010)
Prostate
, vol.70
, pp. 305-316
-
-
Yao, V.1
Berkman, C.E.2
Choi, J.K.3
O'Keefe, D.S.4
Bacich, D.J.5
-
71
-
-
48349105059
-
Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy
-
ZHOU, J., LI, H., LI, S., ZAIA, J., and ROSSI, J.J. (2008). Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy. Mol. Ther. 16, 1481-1489.
-
(2008)
Mol. Ther.
, vol.16
, pp. 1481-1489
-
-
Zhou, J.1
H, L.I.2
S, L.I.3
Zaia, J.4
Rossi, J.J.5
-
72
-
-
78650917894
-
Structural prediction and binding analysis of hybridized aptamers
-
ZHOU, J., SOONTORNWORAJIT, B., SNIPES, M.P., and WANG, Y. (2011). Structural prediction and binding analysis of hybridized aptamers. J. Mol. Recognit. 24, 119-126.
-
(2011)
J. Mol. Recognit.
, vol.24
, pp. 119-126
-
-
Zhou, J.1
Soontornworajit, B.2
Snipes, M.P.3
Wang, Y.4
-
73
-
-
66249129385
-
Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells
-
ZHOU, J., SWIDERSKI, P., LI, H., ZHANG, J., NEFF, C.P., AKKINA, R., and ROSSI, J.J. (2009). Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells. Nucleic Acids Res. 37, 3094-3109.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3094-3109
-
-
Zhou, J.1
Swiderski, P.2
H, L.I.3
Zhang, J.4
Neff, C.P.5
Akkina, R.6
Rossi, J.J.7
|