메뉴 건너뛰기




Volumn 35, Issue 22, 2007, Pages 7626-7635

Exploring the sequence space of a DNA aptamer using microarrays

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; IMMUNOGLOBULIN E;

EID: 38049048268     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm922     Document Type: Article
Times cited : (108)

References (30)
  • 1
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk,C. and Gold,L. (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science, 249, 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 2
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington,A.D. and Szostak,J.W. (1990) In vitro selection of RNA molecules that bind specific ligands. Nature, 346, 818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 8
    • 0038167143 scopus 로고    scopus 로고
    • Aptamer-based biosensor arrays for detection and quantification of biological macromolecules
    • McCauley,T.G., Hamaguchi,N. and Stanton,M. (2003) Aptamer-based biosensor arrays for detection and quantification of biological macromolecules. Anal. Biochem., 319, 244-250.
    • (2003) Anal. Biochem , vol.319 , pp. 244-250
    • McCauley, T.G.1    Hamaguchi, N.2    Stanton, M.3
  • 9
    • 20444396612 scopus 로고    scopus 로고
    • An aptamer-based protein biochip
    • Stadtherr,K., Wolf,H. and Lindner,P. (2005) An aptamer-based protein biochip. Anal. Chem., 77, 3437-3443.
    • (2005) Anal. Chem , vol.77 , pp. 3437-3443
    • Stadtherr, K.1    Wolf, H.2    Lindner, P.3
  • 11
    • 26644451181 scopus 로고    scopus 로고
    • Production and processing of aptamer microarrays
    • Collett,J.R., Cho,E.J. and Ellington,A.D. (2005) Production and processing of aptamer microarrays. Methods, 37, 4-15.
    • (2005) Methods , vol.37 , pp. 4-15
    • Collett, J.R.1    Cho, E.J.2    Ellington, A.D.3
  • 13
    • 33845893375 scopus 로고    scopus 로고
    • Fabrication and characterization of RNA aptamer microarrays for the study of protein-aptamer interactions with SPR imaging
    • Li,Y., Lee,H.J. and Corn,R.M. (2006) Fabrication and characterization of RNA aptamer microarrays for the study of protein-aptamer interactions with SPR imaging. Nucleic Acids Res., 34, 6416-6424.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6416-6424
    • Li, Y.1    Lee, H.J.2    Corn, R.M.3
  • 14
    • 33846992303 scopus 로고    scopus 로고
    • Detection of protein biomarkers using RNA aptamer microarrays and enzymatically amplified surface plasmon resonance imaging
    • Li,Y., Lee,H.J. and Corn,R.M. (2007) Detection of protein biomarkers using RNA aptamer microarrays and enzymatically amplified surface plasmon resonance imaging. Anal. Chem., 79, 1082-1088.
    • (2007) Anal. Chem , vol.79 , pp. 1082-1088
    • Li, Y.1    Lee, H.J.2    Corn, R.M.3
  • 15
    • 23744450697 scopus 로고    scopus 로고
    • Label-free electrochemical detection for aptamer-based array electrodes
    • Xu,D., Xu,D., Yu,X., Liu,Z., He,W. and Ma,Z. (2005) Label-free electrochemical detection for aptamer-based array electrodes. Anal. Chem., 77, 5107-5113.
    • (2005) Anal. Chem , vol.77 , pp. 5107-5113
    • Xu, D.1    Xu, D.2    Yu, X.3    Liu, Z.4    He, W.5    Ma, Z.6
  • 16
    • 0029943440 scopus 로고    scopus 로고
    • High-affinity oligonucleotide ligand to human IgE inhibit binding to Fc epsilon receptor I
    • Wiegand,T.W., Wilhams,P.B., Dreskin,S.C., Jouvin,M.H., Kinet,J.P. and Tasset,D. (1996) High-affinity oligonucleotide ligand to human IgE inhibit binding to Fc epsilon receptor I. J. Immunol., 157, 221-230.
    • (1996) J. Immunol , vol.157 , pp. 221-230
    • Wiegand, T.W.1    Wilhams, P.B.2    Dreskin, S.C.3    Jouvin, M.H.4    Kinet, J.P.5    Tasset, D.6
  • 17
    • 0035912721 scopus 로고    scopus 로고
    • Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
    • Bulyk,M.L., Huang,X., Choo,Y. and Church,G.M. (2001) Exploring the DNA-binding specificities of zinc fingers with DNA microarrays. Proc. Natl Acad. Sci. USA, 98, 7158-7163.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 7158-7163
    • Bulyk, M.L.1    Huang, X.2    Choo, Y.3    Church, G.M.4
  • 18
    • 33750882505 scopus 로고    scopus 로고
    • Berger.M.F., Philippakis,A.A., Qureshi,A.M., He,F.S., Estep,P.W., III and Bulyk,M.L. (2006) Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat. Biotechnol., 24, 1429-1435.
    • Berger.M.F., Philippakis,A.A., Qureshi,A.M., He,F.S., Estep,P.W., III and Bulyk,M.L. (2006) Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat. Biotechnol., 24, 1429-1435.
  • 19
    • 33749061959 scopus 로고    scopus 로고
    • Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins
    • Berger,M.F. and Bulyk,M.L. (2006) Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins. Methods Mol. Biol., 338, 245-260.
    • (2006) Methods Mol. Biol , vol.338 , pp. 245-260
    • Berger, M.F.1    Bulyk, M.L.2
  • 20
    • 33746829957 scopus 로고    scopus 로고
    • DNA microarray technologies for measuring protein-DNA interactions
    • Bulyk,M.L. (2006) DNA microarray technologies for measuring protein-DNA interactions. Curr. Opin. Biotechnol., 17, 422-430.
    • (2006) Curr. Opin. Biotechnol , vol.17 , pp. 422-430
    • Bulyk, M.L.1
  • 21
    • 0026045893 scopus 로고
    • HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA
    • Bartel,D.P., Zapp,M.L., Green,M.R. and Szostak,J.W. (1991) HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA. Cell, 67, 529-536.
    • (1991) Cell , vol.67 , pp. 529-536
    • Bartel, D.P.1    Zapp, M.L.2    Green, M.R.3    Szostak, J.W.4
  • 22
    • 0029361759 scopus 로고
    • In vitro selection methodologies to probe RNA function and structure
    • Conrad,R.C., Baskerville,S. and Ellington,A.D. (1995) In vitro selection methodologies to probe RNA function and structure. Mol. Divers, 1, 69-78.
    • (1995) Mol. Divers , vol.1 , pp. 69-78
    • Conrad, R.C.1    Baskerville, S.2    Ellington, A.D.3
  • 24
    • 0028011142 scopus 로고
    • Characterization of an in vitro-selected RNA ligand to the HIV-1 Rev protein
    • Jensen,K.B., Green,L., MacDougal-Waugh,S. and Tuerk,C. (1994) Characterization of an in vitro-selected RNA ligand to the HIV-1 Rev protein. J. Mol. Biol., 235, 237-247.
    • (1994) J. Mol. Biol , vol.235 , pp. 237-247
    • Jensen, K.B.1    Green, L.2    MacDougal-Waugh, S.3    Tuerk, C.4
  • 25
    • 0028960472 scopus 로고
    • Comprehensive chemical modification interference and nucleotide substitution analysis of an RNA pseudoknot inhibitor to HIV-1 reverse transcriptase
    • Green,L., Waugh,S., Binkley,J.P., Hostomska,Z., Hostomsky,Z. and Tuerk,C. (1995) Comprehensive chemical modification interference and nucleotide substitution analysis of an RNA pseudoknot inhibitor to HIV-1 reverse transcriptase. J. Mol. Biol., 247, 60-68.
    • (1995) J. Mol. Biol , vol.247 , pp. 60-68
    • Green, L.1    Waugh, S.2    Binkley, J.P.3    Hostomska, Z.4    Hostomsky, Z.5    Tuerk, C.6
  • 26
    • 0028874701 scopus 로고
    • Structural probing and damage selection of citrulline- and arginine-specific RNA aptamers identify base positions required for binding
    • Burgstaller,P., Kochoyan,M. and Famulok,M. (1995) Structural probing and damage selection of citrulline- and arginine-specific RNA aptamers identify base positions required for binding. Nucleic Acids Res., 23, 4769-4776.
    • (1995) Nucleic Acids Res , vol.23 , pp. 4769-4776
    • Burgstaller, P.1    Kochoyan, M.2    Famulok, M.3
  • 27
    • 1942489258 scopus 로고    scopus 로고
    • Carothers,J.M., Oestreich,S.C., Davis,J.H. and Szostak,J,W. (2004) Informational complexity and functional activity of RNA structures. J. Am. Chem. Soc., 126, 5130-5137.
    • Carothers,J.M., Oestreich,S.C., Davis,J.H. and Szostak,J,W. (2004) Informational complexity and functional activity of RNA structures. J. Am. Chem. Soc., 126, 5130-5137.
  • 28
    • 0023042012 scopus 로고
    • Information content of binding sites on nucleotide sequences
    • Schneider,T.D., Stormo,G.D., Gold,L. and Ehrenfeucht,A. (1986) Information content of binding sites on nucleotide sequences. J. Mol. Biol., 188, 415-431.
    • (1986) J. Mol. Biol , vol.188 , pp. 415-431
    • Schneider, T.D.1    Stormo, G.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 29
    • 0023678091 scopus 로고
    • Computer methods for analyzing sequence recognition of nucleic acids
    • Stormo,G.D. (1988) Computer methods for analyzing sequence recognition of nucleic acids. Annu. Rev. Biophys. Mophys. Chem., 17, 241-263.
    • (1988) Annu. Rev. Biophys. Mophys. Chem , vol.17 , pp. 241-263
    • Stormo, G.D.1
  • 30
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.