-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection
-
2006.0008
-
Baba, T., et al 2006. Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
-
2
-
-
0037566670
-
Structural insights into the origins of DNA polymerase fidelity
-
Beard, W. A., and S. H. Wilson 2003. Structural insights into the origins of DNA polymerase fidelity. Structure 11:489-496.
-
(2003)
Structure
, vol.11
, pp. 489-496
-
-
Beard, W.A.1
Wilson, S.H.2
-
3
-
-
0033607496
-
SOS mutagenesis results from upregulation of translesion synthesis
-
Becherel, O. J., and R. P. Fuchs 1999. SOS mutagenesis results from upregulation of translesion synthesis. J. Mol. Biol. 294:299-306.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 299-306
-
-
Becherel, O.J.1
Fuchs, R.P.2
-
4
-
-
0037019606
-
Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells
-
Becherel, O. J., R. P. P. Fuchs, and J. Wagner 2002. Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells. DNA Repair (Amst.) 1:703-708.
-
(2002)
DNA Repair (Amst.)
, vol.1
, pp. 703-708
-
-
Becherel, O.J.1
Fuchs, R.P.P.2
Wagner, J.3
-
5
-
-
70349156469
-
Characterization of novel alleles of the Escherichia coli umuDC genes identifies additional interaction sites of UmuC with the beta clamp
-
Beuning, P. J., et al 2009. Characterization of novel alleles of the Escherichia coli umuDC genes identifies additional interaction sites of UmuC with the beta clamp. J. Bacteriol. 191:5910-5920.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 5910-5920
-
-
Beuning, P.J.1
-
6
-
-
33645064547
-
Two processivity clamp interactions differentially alter the dual activities of UmuC
-
Beuning, P. J., D. Sawicka, D. Barsky, and G. C. Walker 2006. Two processivity clamp interactions differentially alter the dual activities of UmuC. Mol. Microbiol. 59:460-474.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 460-474
-
-
Beuning, P.J.1
Sawicka, D.2
Barsky, D.3
Walker, G.C.4
-
7
-
-
33745021288
-
Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors
-
Beuning, P. J., S. M. Simon, V. G. Godoy, D. F. Jarosz, and G. C. Walker 2006. Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors. Methods Enzymol. 408:318-340.
-
(2006)
Methods Enzymol
, vol.408
, pp. 318-340
-
-
Beuning, P.J.1
Simon, S.M.2
Godoy, V.G.3
Jarosz, D.F.4
Walker, G.C.5
-
8
-
-
33646906556
-
A non-cleavable UmuD variant that acts as a UmuD′ mimic
-
Beuning, P. J., S. M. Simon, A. Zemla, D. Barsky, and G. C. Walker 2006. A non-cleavable UmuD variant that acts as a UmuD′ mimic. J. Biol. Chem. 281:9633-9640.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 9633-9640
-
-
Beuning, P.J.1
Simon, S.M.2
Zemla, A.3
Barsky, D.4
Walker, G.C.5
-
9
-
-
77953924511
-
Structure and mechanism of human DNA polymerase eta
-
Biertumpfel, C., et al. 2010. Structure and mechanism of human DNA polymerase eta. Nature 465:1044-1048.
-
(2010)
Nature
, vol.465
, pp. 1044-1048
-
-
Biertumpfel, C.1
-
11
-
-
0037198267
-
Structure-based interpretation of missense mutations in Y-family DNA polymerases and their implications for polymerase function and lesion bypass
-
Boudsocq, F., H. Ling, W. Yang, and R. Woodgate 2002. Structure-based interpretation of missense mutations in Y-family DNA polymerases and their implications for polymerase function and lesion bypass. DNA Repair (Amst.) 1:343-358.
-
(2002)
DNA Repair (Amst.)
, vol.1
, pp. 343-358
-
-
Boudsocq, F.1
Ling, H.2
Yang, W.3
Woodgate, R.4
-
12
-
-
0024121565
-
UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA
-
Burckhardt, S. E., R. Woodgate, R. H. Scheuermann, and H. Echols 1988. UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA. Proc. Natl. Acad. Sci. U. S. A. 85:1811-1815.
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 1811-1815
-
-
Burckhardt, S.E.1
Woodgate, R.2
Scheuermann, R.H.3
Echols, H.4
-
13
-
-
79955924958
-
Architecture of y-family DNA polymerases relevant to translesion DNA synthesis as revealed in structural and molecular modeling studies
-
pii=784081
-
Chandani, S., C. Jacobs, and E. L. Loechler 2010. Architecture of y-family DNA polymerases relevant to translesion DNA synthesis as revealed in structural and molecular modeling studies. J. Nucleic Acids 2010: pii 784081.
-
(2010)
J. Nucleic Acids
, vol.2010
-
-
Chandani, S.1
Jacobs, C.2
Loechler, E.L.3
-
14
-
-
61449241642
-
Y-family DNA polymerases may use two different dNTP shapes for insertion: a hypothesis and its implications
-
Chandani, S., and E. L. Loechler 2009. Y-family DNA polymerases may use two different dNTP shapes for insertion: a hypothesis and its implications. J. Mol. Graph. Model. 27:759-769.
-
(2009)
J. Mol. Graph. Model.
, vol.27
, pp. 759-769
-
-
Chandani, S.1
Loechler, E.L.2
-
15
-
-
0021714276
-
A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors
-
Churchward, G., D. Belin, and Y. Nagamine 1984. A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors. Gene 31:165-171.
-
(1984)
Gene
, vol.31
, pp. 165-171
-
-
Churchward, G.1
Belin, D.2
Nagamine, Y.3
-
16
-
-
21344460325
-
Inhibition of mutation and combating the evolution of antibiotic resistance
-
Cirz, R. T., et al 2005. Inhibition of mutation and combating the evolution of antibiotic resistance. PLoS Biol. 3:e176.
-
(2005)
PLoS Biol
, vol.3
-
-
Cirz, R.T.1
-
17
-
-
33846252282
-
Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin
-
Cirz, R. T., et al 2007. Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin. J. Bacteriol. 189:531-539.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 531-539
-
-
Cirz, R.T.1
-
18
-
-
0033538493
-
Stopping DNA replication in its tracks
-
Cleaver, J. E 1999. Stopping DNA replication in its tracks. Science 285:212- 213.
-
(1999)
Science
, vol.285
, pp. 212-213
-
-
Cleaver, J.E.1
-
19
-
-
33745153750
-
Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coli
-
Courcelle, C. T., K. H. Chow, A. Casey, and J. Courcelle 2006. Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 103:9154- 9159.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 9154-9159
-
-
Courcelle, C.T.1
Chow, K.H.2
Casey, A.3
Courcelle, J.4
-
20
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
Dalrymple, B. P., K. Kongsuwan, G. Wijffels, N. E. Dixon, and P. A. Jennings 2001. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. U. S. A. 98: 11627-11632.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
21
-
-
0034737314
-
Visualization of two binding sites for the Escherichia coli UmuD′(2)C complex (DNA pol V) on RecA-ssDNA filaments
-
Frank, E. G., et al 2000. Visualization of two binding sites for the Escherichia coli UmuD′(2)C complex (DNA pol V) on RecA-ssDNA filaments. J. Mol. Biol. 297:585-597.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 585-597
-
-
Frank, E.G.1
-
23
-
-
70349296874
-
Biochemical basis for the essential genetic requirements of RecA and the beta-clamp in Pol V activation
-
Fujii, S., and R. P. Fuchs 2009. Biochemical basis for the essential genetic requirements of RecA and the beta-clamp in Pol V activation. Proc. Natl. Acad. Sci. U. S. A. 106:14825-14830.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 14825-14830
-
-
Fujii, S.1
Fuchs, R.P.2
-
24
-
-
9144264274
-
Defining the position of the switches between replicative and bypass DNA polymerases
-
Fujii, S., and R. P. Fuchs 2004. Defining the position of the switches between replicative and bypass DNA polymerases. EMBO J. 23:4342-4352.
-
(2004)
EMBO J
, vol.23
, pp. 4342-4352
-
-
Fujii, S.1
Fuchs, R.P.2
-
25
-
-
3342995284
-
The biochemical requirements of DNA polymerase V-mediated translesion synthesis revisited
-
Fujii, S., V. Gasser, and R. P. Fuchs 2004. The biochemical requirements of DNA polymerase V-mediated translesion synthesis revisited. J. Mol. Biol. 341:405-417.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 405-417
-
-
Fujii, S.1
Gasser, V.2
Fuchs, R.P.3
-
26
-
-
0037126608
-
Mutations in human DNA polymerase eta motif II alter bypass of DNA lesions
-
Glick, E., K. L. Vigna, and L. A. Loeb 2001. Mutations in human DNA polymerase eta motif II alter bypass of DNA lesions. EMBO J 20:7303- 7312.
-
(2001)
EMBO J
, vol.20
, pp. 7303-7312
-
-
Glick, E.1
Vigna, K.L.2
Loeb, L.A.3
-
27
-
-
0030479442
-
Analysis of the region between amino acids 30 and 42 of intact UmuD by a monocysteine approach
-
Guzzo, A., M. H. Lee, K. Oda, and G. C. Walker 1996. Analysis of the region between amino acids 30 and 42 of intact UmuD by a monocysteine approach. J. Bacteriol. 178:7295-7303.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 7295-7303
-
-
Guzzo, A.1
Lee, M.H.2
Oda, K.3
Walker, G.C.4
-
29
-
-
33846695786
-
Y-family DNA polymerases in Escherichia coli
-
Jarosz, D. F., P. J. Beuning, S. E. Cohen, and G. C. Walker 2007. Y-family DNA polymerases in Escherichia coli. Trends Microbiol. 15:70-77.
-
(2007)
Trends Microbiol
, vol.15
, pp. 70-77
-
-
Jarosz, D.F.1
Beuning, P.J.2
Cohen, S.E.3
Walker, G.C.4
-
30
-
-
30544445218
-
A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates
-
Jarosz, D. F., V. G. Godoy, J. C. Delaney, J. M. Essigmann, and G. C. Walker 2006. A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates. Nature 439:225-228.
-
(2006)
Nature
, vol.439
, pp. 225-228
-
-
Jarosz, D.F.1
Godoy, V.G.2
Delaney, J.C.3
Essigmann, J.M.4
Walker, G.C.5
-
31
-
-
67650831457
-
The active form of DNA polymerase V is UmuD′(2)C-RecA-ATP
-
Jiang, Q., K. Karata, R. Woodgate, M. M. Cox, and M. F. Goodman 2009. The active form of DNA polymerase V is UmuD′(2)C-RecA-ATP. Nature 460:359-363.
-
(2009)
Nature
, vol.460
, pp. 359-363
-
-
Jiang, Q.1
Karata, K.2
Woodgate, R.3
Cox, M.M.4
Goodman, M.F.5
-
32
-
-
0033538470
-
hRAD30 mutations in the variant form of xeroderma pigmentosum
-
Johnson, R. E., C. M. Kondratick, S. Prakash, and L. Prakash 1999. hRAD30 mutations in the variant form of xeroderma pigmentosum. Science 285:263-265.
-
(1999)
Science
, vol.285
, pp. 263-265
-
-
Johnson, R.E.1
Kondratick, C.M.2
Prakash, S.3
Prakash, L.4
-
33
-
-
0034677948
-
Fidelity of human DNA polymerase eta
-
Johnson, R. E., M. T. Washington, S. Prakash, and L. Prakash 2000. Fidelity of human DNA polymerase eta. J. Biol. Chem. 275:7447-7450.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 7447-7450
-
-
Johnson, R.E.1
Washington, M.T.2
Prakash, S.3
Prakash, L.4
-
34
-
-
0037388383
-
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
-
Johnson, S. J., J. S. Taylor, and L. S. Beese 2003. Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations. Proc. Natl. Acad. Sci. U. S. A. 100:3895-3900.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 3895-3900
-
-
Johnson, S.J.1
Taylor, J.S.2
Beese, L.S.3
-
35
-
-
0003890119
-
-
(ed. ), 2nd ed. W. H. Freeman & Company, New York, NY.
-
Kornberg, A., and T. A. Baker (ed.) 1992. DNA replication, 2nd ed. W. H. Freeman & Company, New York, NY.
-
(1992)
DNA replication
-
-
Kornberg, A.1
Baker, T.A.2
-
36
-
-
0025375829
-
Mutation frequency and spectrum resulting from a single abasic site in a singlestranded vector
-
Lawrence, C. W., A. Borden, S. K. Banerjee, and J. E. LeClerc 1990. Mutation frequency and spectrum resulting from a single abasic site in a singlestranded vector. Nucleic Acids Res. 18:2153-2157.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 2153-2157
-
-
Lawrence, C.W.1
Borden, A.2
Banerjee, S.K.3
LeClerc, J.E.4
-
37
-
-
0033736066
-
The processing of a benzo (a) pyrene adduct into a frameshift or a base substitution mutation requires a different set of genes in Escherichia coli
-
Lenne-Samuel, N., R. Janel-Bintz, A. Kolbanovskiy, N. E. Geacintov, and R. P. Fuchs 2000. The processing of a benzo (a) pyrene adduct into a frameshift or a base substitution mutation requires a different set of genes in Escherichia coli. Mol. Microbiol. 38:299-307.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 299-307
-
-
Lenne-Samuel, N.1
Janel-Bintz, R.2
Kolbanovskiy, A.3
Geacintov, N.E.4
Fuchs, R.P.5
-
38
-
-
0026674737
-
DNA replication defect in Salmonella typhimurium mutants lacking the editing (epsilon) subunit of DNA polymerase III
-
Lifsics, M. R., E. D. Lancy, Jr., and R. Maurer 1992. DNA replication defect in Salmonella typhimurium mutants lacking the editing (epsilon) subunit of DNA polymerase III. J. Bacteriol. 174:6965-6973.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6965-6973
-
-
Lifsics, M.R.1
Lancy Jr., E.D.2
Maurer, R.3
-
39
-
-
0035812849
-
Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication
-
Ling, H., F. Boudsocq, R. Woodgate, and W. Yang 2001. Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell 107:91-102.
-
(2001)
Cell
, vol.107
, pp. 91-102
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
40
-
-
0022453793
-
Replication of UV-irradiated single-stranded DNA by DNA polymerase III holoenzyme of Escherichia coli: evidence for bypass of pyrimidine photodimers
-
Livneh, Z 1986. Replication of UV-irradiated single-stranded DNA by DNA polymerase III holoenzyme of Escherichia coli: evidence for bypass of pyrimidine photodimers. Proc. Natl. Acad. Sci. U. S. A. 83:4599-4603.
-
(1986)
Proc. Natl. Acad. Sci. U. S. A.
, vol.83
, pp. 4599-4603
-
-
Livneh, Z.1
-
41
-
-
0348134870
-
Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair
-
Lopez de Saro, F. J., R. E. Georgescu, M. F. Goodman, and M. O'Donnell 2003. Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair. EMBO J. 22:6408-6418.
-
(2003)
EMBO J
, vol.22
, pp. 6408-6418
-
-
Lopez de Saro, F.J.1
Georgescu, R.E.2
Goodman, M.F.3
O'Donnell, M.4
-
42
-
-
0037016026
-
Analysis of the stimulation of DNA polymerase V of Escherichia coli by processivity proteins
-
Maor-Shoshani, A., and Z. Livneh 2002. Analysis of the stimulation of DNA polymerase V of Escherichia coli by processivity proteins. Biochemistry 41: 14438-14446.
-
(2002)
Biochemistry
, vol.41
, pp. 14438-14446
-
-
Maor-Shoshani, A.1
Livneh, Z.2
-
43
-
-
0034660259
-
Mechanisms of accurate translesion synthesis by human DNA polymerase eta
-
Masutani, C., R. Kusumoto, S. Iwai, and F. Hanaoka 2000. Mechanisms of accurate translesion synthesis by human DNA polymerase eta. EMBO J 19:3100-3109.
-
(2000)
EMBO J
, vol.19
, pp. 3100-3109
-
-
Masutani, C.1
Kusumoto, R.2
Iwai, S.3
Hanaoka, F.4
-
44
-
-
0033578040
-
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta
-
Masutani, C., et al 1999. The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta. Nature 399:700-704.
-
(1999)
Nature
, vol.399
, pp. 700-704
-
-
Masutani, C.1
-
45
-
-
0003842951
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. H 1992. A short course in bacterial genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1992)
A short course in bacterial genetics
-
-
Miller, J.H.1
-
46
-
-
0024121518
-
RecAmediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation
-
Nohmi, T., J. R. Battista, L. A. Dodson, and G. C. Walker 1988. RecAmediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation. Proc. Natl. Acad. Sci. U. S. A. 85:1816-1820.
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 1816-1820
-
-
Nohmi, T.1
Battista, J.R.2
Dodson, L.A.3
Walker, G.C.4
-
47
-
-
17944380943
-
The Y-family of DNA polymerases
-
Ohmori, H., et al 2001. The Y-family of DNA polymerases. Mol. Cell 8:7-8.
-
(2001)
Mol. Cell
, vol.8
, pp. 7-8
-
-
Ohmori, H.1
-
48
-
-
79952780138
-
The dimeric SOS mutagenesis protein UmuD is active as a monomer
-
Ollivierre, J. N., J. L. Sikora, and P. J. Beuning 2011. The dimeric SOS mutagenesis protein UmuD is active as a monomer. J. Biol. Chem. 286:3607- 3617.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 3607-3617
-
-
Ollivierre, J.N.1
Sikora, J.L.2
Beuning, P.J.3
-
49
-
-
67749113270
-
Nucleotide excision repair is a predominant mechanism for processing nitrofurazone-induced DNA damage in Escherichia coli
-
Ona, K. R., C. T. Courcelle, and J. Courcelle 2009. Nucleotide excision repair is a predominant mechanism for processing nitrofurazone-induced DNA damage in Escherichia coli. J. Bacteriol 191:4959-4965.
-
(2009)
J. Bacteriol
, vol.191
, pp. 4959-4965
-
-
Ona, K.R.1
Courcelle, C.T.2
Courcelle, J.3
-
50
-
-
0033529873
-
A model for a umuDC-dependent prokaryotic DNA damage checkpoint
-
Opperman, T., S. Murli, B. T. Smith, and G. C. Walker 1999. A model for a umuDC-dependent prokaryotic DNA damage checkpoint. Proc. Natl. Acad. Sci. U. S. A. 96:9218-9223.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 9218-9223
-
-
Opperman, T.1
Murli, S.2
Smith, B.T.3
Walker, G.C.4
-
51
-
-
0029745671
-
The genetic requirements for UmuDC-mediated cold sensitivity are distinct from those for SOS mutagenesis
-
Opperman, T., S. Murli, and G. C. Walker 1996. The genetic requirements for UmuDC-mediated cold sensitivity are distinct from those for SOS mutagenesis. J. Bacteriol. 178:4400-4411.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4400-4411
-
-
Opperman, T.1
Murli, S.2
Walker, G.C.3
-
52
-
-
0037115955
-
How DNA lesions are turned into mutations within cells?
-
Pages, V., and R. P. Fuchs 2002. How DNA lesions are turned into mutations within cells? Oncogene 21:8957-8966.
-
(2002)
Oncogene
, vol.21
, pp. 8957-8966
-
-
Pages, V.1
Fuchs, R.P.2
-
53
-
-
24044500612
-
Pol III proofreading activity prevents lesion bypass as evidenced by its molecular signature within E. coli cells
-
Pages, V., R. Janel-Bintz, and R. P. Fuchs 2005. Pol III proofreading activity prevents lesion bypass as evidenced by its molecular signature within E. coli cells. J. Mol. Biol. 352:501-509.
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 501-509
-
-
Pages, V.1
Janel-Bintz, R.2
Fuchs, R.P.3
-
54
-
-
0035906661
-
Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection
-
Patel, P. H., M. Suzuki, E. Adman, A. Shinkai, and L. A. Loeb 2001. Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection. J. Mol. Biol. 308:823-837.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 823-837
-
-
Patel, P.H.1
Suzuki, M.2
Adman, E.3
Shinkai, A.4
Loeb, L.A.5
-
55
-
-
0000155801
-
Phenomenology of an inducible mutagenic DNA repair pathway in Escherichia coli: SOS repair hypothesis
-
L. Prakash et al. (ed.), xv, 289. Thomas, Springfield, IL
-
Radman, M 1974. Phenomenology of an inducible mutagenic DNA repair pathway in Escherichia coli: SOS repair hypothesis, p. xv, 289. In L. Prakash et al. (ed.), Molecular and environmental aspects of mutagenesis. Thomas, Springfield, IL.
-
(1974)
Molecular and environmental aspects of mutagenesis
-
-
Radman, M.1
-
56
-
-
0032484207
-
Modulation of RecA nucleoprotein function by the mutagenic UmuD′C protein complex
-
Rehrauer, W. M., I. Bruck, R. Woodgate, M. F. Goodman, and S. C. Kowalczykowski 1998. Modulation of RecA nucleoprotein function by the mutagenic UmuD′C protein complex. J. Biol. Chem. 273:32384-32387.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 32384-32387
-
-
Rehrauer, W.M.1
Bruck, I.2
Woodgate, R.3
Goodman, M.F.4
Kowalczykowski, S.C.5
-
57
-
-
0033527533
-
The mutagenesis protein UmuC is a DNA polymerase activated by UmuD′, RecA, and SSB and is specialized for translesion replication
-
Reuven, N. B., G. Arad, A. Maor-Shoshani, and Z. Livneh 1999. The mutagenesis protein UmuC is a DNA polymerase activated by UmuD′, RecA, and SSB and is specialized for translesion replication. J. Biol. Chem. 274: 31763-31766.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 31763-31766
-
-
Reuven, N.B.1
Arad, G.2
Maor-Shoshani, A.3
Livneh, Z.4
-
58
-
-
0035937141
-
Lesion bypass by the Escherichia coli DNA polymerase V requires assembly of a RecA nucleoprotein filament
-
Reuven, N. B., G. Arad, A. Z. Stasiak, A. Stasiak, and Z. Livneh 2001. Lesion bypass by the Escherichia coli DNA polymerase V requires assembly of a RecA nucleoprotein filament. J. Biol. Chem. 276:5511-5517.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 5511-5517
-
-
Reuven, N.B.1
Arad, G.2
Stasiak, A.Z.3
Stasiak, A.4
Livneh, Z.5
-
59
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: a laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
60
-
-
33747862944
-
RecA acts in trans to allow replication of damaged DNA by DNA polymerase V
-
Schlacher, K., M. M. Cox, R. Woodgate, and M. F. Goodman 2006. RecA acts in trans to allow replication of damaged DNA by DNA polymerase V. Nature 442:883-887.
-
(2006)
Nature
, vol.442
, pp. 883-887
-
-
Schlacher, K.1
Cox, M.M.2
Woodgate, R.3
Goodman, M.F.4
-
61
-
-
13944270317
-
DNA polymerase V and RecA protein, a minimal mutasome
-
Schlacher, K., et al 2005. DNA polymerase V and RecA protein, a minimal mutasome. Mol. Cell 17:561-572.
-
(2005)
Mol. Cell
, vol.17
, pp. 561-572
-
-
Schlacher, K.1
-
62
-
-
68949218762
-
Amino acid architecture that influences dNTP insertion efficiency in Y-family DNA polymerase V of E. coli
-
Seo, K. Y., et al 2009. Amino acid architecture that influences dNTP insertion efficiency in Y-family DNA polymerase V of E. coli. J. Mol. Biol. 392:270-282.
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 270-282
-
-
Seo, K.Y.1
-
63
-
-
0037085366
-
Efficiency and accuracy of SOS-induced DNA polymerases replicating benzo[a]pyrene-7,8-diol 9,10-epoxide A and G adducts
-
Shen, X., et al 2002. Efficiency and accuracy of SOS-induced DNA polymerases replicating benzo[a]pyrene-7,8-diol 9,10-epoxide A and G adducts. J. Biol. Chem. 277:5265-5274.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 5265-5274
-
-
Shen, X.1
-
64
-
-
0024121627
-
RecA proteindependent cleavage of UmuD protein and SOS mutagenesis
-
Shinagawa, H., H. Iwasaki, T. Kato, and A. Nakata 1988. RecA proteindependent cleavage of UmuD protein and SOS mutagenesis. Proc. Natl. Acad. Sci. U. S. A. 85:1806-1810.
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 1806-1810
-
-
Shinagawa, H.1
Iwasaki, H.2
Kato, T.3
Nakata, A.4
-
65
-
-
67749133493
-
Steric gate variants of UmuC confer UV hypersensitivity on Escherichia coli
-
Shurtleff, B. W., J. N. Ollivierre, M. Tehrani, G. C. Walker, and P. J. Beuning 2009. Steric gate variants of UmuC confer UV hypersensitivity on Escherichia coli. J. Bacteriol 191:4815-4823.
-
(2009)
J. Bacteriol
, vol.191
, pp. 4815-4823
-
-
Shurtleff, B.W.1
Ollivierre, J.N.2
Tehrani, M.3
Walker, G.C.4
Beuning, P.J.5
-
66
-
-
70349146584
-
The SOS regulatory network
-
A. Bock et al. (ed.), ASM Press, Washington, DC
-
Simmons, L. A., J. J. Foti, S. E. Cohen, and G. C. Walker 2008. The SOS regulatory network. In A. Bock et al. (ed.), EcoSal-Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC.
-
(2008)
EcoSal-Escherichia coli and Salmonella: cellular and molecular biology
-
-
Simmons, L.A.1
Foti, J.J.2
Cohen, S.E.3
Walker, G.C.4
-
67
-
-
0028055071
-
holE, the gene coding for the theta subunit of DNA polymerase III of Escherichia coli: characterization of a holE mutant and comparison with a dnaQ (epsilonsubunit) mutant
-
Slater, S. C., M. R. Lifsics, M. O'Donnell, and R. Maurer 1994. holE, the gene coding for the theta subunit of DNA polymerase III of Escherichia coli: characterization of a holE mutant and comparison with a dnaQ (epsilonsubunit) mutant. J. Bacteriol. 176:815-821.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 815-821
-
-
Slater, S.C.1
Lifsics, M.R.2
O'Donnell, M.3
Maurer, R.4
-
68
-
-
0027729063
-
The appearance of the UmuD′C protein complex in Escherichia coli switches repair from homologous recombination to SOS mutagenesis
-
Sommer, S., A. Bailone, and R. Devoret 1993. The appearance of the UmuD′C protein complex in Escherichia coli switches repair from homologous recombination to SOS mutagenesis. Mol. Microbiol. 10:963-971.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 963-971
-
-
Sommer, S.1
Bailone, A.2
Devoret, R.3
-
69
-
-
0031944934
-
Specific RecA amino acid changes affect RecA-UmuD′C interaction
-
Sommer, S., F. Boudsocq, R. Devoret, and A. Bailone 1998. Specific RecA amino acid changes affect RecA-UmuD′C interaction. Mol. Microbiol. 28: 281-291.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 281-291
-
-
Sommer, S.1
Boudsocq, F.2
Devoret, R.3
Bailone, A.4
-
70
-
-
0034120803
-
Specific amino acid changes enhance the anti-recombination activity of the UmuD′C complex
-
Sommer, S., G. Coste, and A. Bailone 2000. Specific amino acid changes enhance the anti-recombination activity of the UmuD′C complex. Mol. Microbiol. 35:1443-1453.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1443-1453
-
-
Sommer, S.1
Coste, G.2
Bailone, A.3
-
71
-
-
0027299907
-
Induction of only one SOS operon, umuDC, is required for SOS mutagenesis in Escherichia coli
-
Sommer, S., J. Knezevic, A. Bailone, and R. Devoret 1993. Induction of only one SOS operon, umuDC, is required for SOS mutagenesis in Escherichia coli. Mol. Gen. Genet. 239:137-144.
-
(1993)
Mol. Gen. Genet.
, vol.239
, pp. 137-144
-
-
Sommer, S.1
Knezevic, J.2
Bailone, A.3
Devoret, R.4
-
72
-
-
0026111317
-
The 'A rule' of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions?
-
Strauss, B. S 1991. The 'A rule' of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions? Bioessays 13:79-84.
-
(1991)
Bioessays
, vol.13
, pp. 79-84
-
-
Strauss, B.S.1
-
73
-
-
15944400711
-
Mutant forms of the Escherichia coli beta sliding clamp that distinguish between its roles in replication and DNA polymerase V-dependent translesion DNA synthesis
-
Sutton, M. D., J. M. Duzen, and R. W. Maul 2005. Mutant forms of the Escherichia coli beta sliding clamp that distinguish between its roles in replication and DNA polymerase V-dependent translesion DNA synthesis. Mol. Microbiol. 55:1751-1766.
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 1751-1766
-
-
Sutton, M.D.1
Duzen, J.M.2
Maul, R.W.3
-
74
-
-
0035185616
-
Genetic and biochemical characterization of a novel umuD mutation: insights into a mechanism for UmuD self-cleavage
-
Sutton, M. D., M. Kim, and G. C. Walker 2001. Genetic and biochemical characterization of a novel umuD mutation: insights into a mechanism for UmuD self-cleavage. J. Bacteriol. 183:347-357.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 347-357
-
-
Sutton, M.D.1
Kim, M.2
Walker, G.C.3
-
75
-
-
0029916565
-
Substitution of mucAB or rumAB for umuDC alters the relative frequencies of the two classes of mutations induced by a site-specific T-T cyclobutane dimer and the efficiency of translesion DNA synthesis
-
Szekeres, E. S., Jr., R. Woodgate, and C. W. Lawrence 1996. Substitution of mucAB or rumAB for umuDC alters the relative frequencies of the two classes of mutations induced by a site-specific T-T cyclobutane dimer and the efficiency of translesion DNA synthesis. J. Bacteriol. 178:2559-2563.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2559-2563
-
-
Szekeres Jr., E.S.1
Woodgate, R.2
Lawrence, C.W.3
-
76
-
-
0029587614
-
In vitro inhibition of RecA-mediated homologous pairing by UmuD′C proteins
-
Szpilewska, H., P. Bertrand, A. Bailone, and M. Dutreix 1995. In vitro inhibition of RecA-mediated homologous pairing by UmuD′C proteins. Biochimie 77:848-853.
-
(1995)
Biochimie
, vol.77
, pp. 848-853
-
-
Szpilewska, H.1
Bertrand, P.2
Bailone, A.3
Dutreix, M.4
-
77
-
-
0034720286
-
Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis
-
Tang, M., et al 2000. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404:1014-1018.
-
(2000)
Nature
, vol.404
, pp. 1014-1018
-
-
Tang, M.1
-
78
-
-
0033529763
-
UmuD′(2)C is an error-prone DNA polymerase, Escherichia coli pol V
-
Tang, M., et al 1999. UmuD′(2)C is an error-prone DNA polymerase, Escherichia coli pol V. Proc. Natl. Acad. Sci. U. S. A. 96:8919-8924.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 8919-8924
-
-
Tang, M.1
-
79
-
-
0032447594
-
Efficient translesion replication in the absence of Escherichia coli Umu proteins and 3′-5′ exonuclease proofreading function
-
Vandewiele, D., A. Borden, P. I. O'Grady, R. Woodgate, and C. W. Lawrence 1998. Efficient translesion replication in the absence of Escherichia coli Umu proteins and 3′-5′ exonuclease proofreading function. Proc. Natl. Acad. Sci. U. S. A. 95:15519-15524.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 15519-15524
-
-
Vandewiele, D.1
Borden, A.2
O'Grady, P.I.3
Woodgate, R.4
Lawrence, C.W.5
-
80
-
-
0034574554
-
The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity
-
Wagner, J., S. Fujii, P. Gruz, T. Nohmi, and R. P. Fuchs 2000. The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity. EMBO Rep. 1:484-488.
-
(2000)
EMBO Rep
, vol.1
, pp. 484-488
-
-
Wagner, J.1
Fujii, S.2
Gruz, P.3
Nohmi, T.4
Fuchs, R.P.5
-
81
-
-
2542472534
-
UmuC mutagenesis protein of Escherichia coli: purification and interaction with UmuD and UmuD′
-
Woodgate, R., M. Rajagopalan, C. Lu, and H. Echols 1989. UmuC mutagenesis protein of Escherichia coli: purification and interaction with UmuD and UmuD′. Proc. Natl. Acad. Sci. U. S. A. 86:7301-7305.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 7301-7305
-
-
Woodgate, R.1
Rajagopalan, M.2
Lu, C.3
Echols, H.4
-
82
-
-
0026640077
-
Mutagenesis induced by bacterial UmuDC proteins and their plasmid homologues
-
Woodgate, R., and S. G. Sedgwick 1992. Mutagenesis induced by bacterial UmuDC proteins and their plasmid homologues. Mol. Microbiol. 6:2213- 2218.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 2213-2218
-
-
Woodgate, R.1
Sedgwick, S.G.2
-
83
-
-
0842303308
-
A role for DNA polymerase V in G → T mutations from the major benzo[a]pyrene N2-dG adduct when studied in a 5′-TGT sequence in E. coli
-
Yin, J., K. Y. Seo, and E. L. Loechler 2004. A role for DNA polymerase V in G → T mutations from the major benzo[a]pyrene N2-dG adduct when studied in a 5′-TGT sequence in E. coli. DNA Repair (Amst.) 3:323-334.
-
(2004)
DNA Repair (Amst. )
, vol.3
, pp. 323-334
-
-
Yin, J.1
Seo, K.Y.2
Loechler, E.L.3
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