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Volumn 2010, Issue , 2010, Pages

Emerging vaccine informatics

Author keywords

[No Author keywords available]

Indexed keywords

ADHESIN; B LYMPHOCYTE ANTIGEN; BACTERIAL PROTEIN; EPITOPE; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; T LYMPHOCYTE ANTIGEN; VACCINE; ANTIBODY; PROTEOME;

EID: 80052724541     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2010/218590     Document Type: Review
Times cited : (130)

References (266)
  • 2
    • 0033979937 scopus 로고    scopus 로고
    • Vaccines in historic evolution and perspective: A narrative of vaccine discoveries
    • DOI 10.1016/S0264-410X(99)00434-X, PII S0264410X9900434X
    • Hilleman M. R., Vaccines in historic evolution and perspective: a narrative of vaccine discoveries Vaccine 2000 18 15 1436 1447 (Pubitemid 30017824)
    • (2000) Vaccine , vol.18 , Issue.15 , pp. 1436-1447
    • Hilleman, M.R.1
  • 3
    • 33845204083 scopus 로고    scopus 로고
    • Smallpox vaccines: Past, present, and future
    • DOI 10.1016/j.jaci.2006.09.037, PII S0091674906020136
    • Parrino J., Graham B. S., Smallpox vaccines: past, present, and future Journal of Allergy and Clinical Immunology 2006 118 6 1320 1326 (Pubitemid 44854134)
    • (2006) Journal of Allergy and Clinical Immunology , vol.118 , Issue.6 , pp. 1320-1326
    • Parrino, J.1    Graham, B.S.2
  • 5
    • 0035989334 scopus 로고    scopus 로고
    • Immuno-informatics: Mining genomes for vaccine components
    • DOI 10.1046/j.1440-1711.2002.01092.x
    • De Groot A. S., Sbai H., Aubin C. S., McMurry J., Martin W., Immuno-informatics: mining genomes for vaccine components Immunology and Cell Biology 2002 80 3 255 269 (Pubitemid 34639376)
    • (2002) Immunology and Cell Biology , vol.80 , Issue.3 , pp. 255-269
    • De Groot, A.S.1    Sbai, H.2    Aubin, C.S.3    McMurry, J.4    Martin, W.5
  • 9
    • 73449148514 scopus 로고    scopus 로고
    • Epitope-based Immunome-derived vaccines: A strategy for improved design and safety
    • Falus A. New York, NY, USA Springer Springer Immunomics Series
    • De Groot A.S., McMurry J., Moise L., Martin B., Falus A., Epitope-based Immunome-derived vaccines: a strategy for improved design and safety Applications of Immunomics 2009 New York, NY, USA Springer Springer Immunomics Series
    • (2009) Applications of Immunomics
    • De Groot, A.S.1    McMurry, J.2    Moise, L.3    Martin, B.4
  • 10
    • 0034629284 scopus 로고    scopus 로고
    • Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing
    • Pizza M., Scarlato V., Masignani V., Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing Science 2000 287 1816 1820
    • (2000) Science , vol.287 , pp. 1816-1820
    • Pizza, M.1    Scarlato, V.2    Masignani, V.3
  • 16
    • 80052697346 scopus 로고    scopus 로고
    • Mining of vaccine associated IFN- gene interaction networks using the Vaccine Ontology
    • Ozgur A., Xiang Z., Radev D., He Y., Mining of vaccine associated IFN- gene interaction networks using the Vaccine Ontology. Journal of Biomedical Semantics. 2(Suppl 2):S8, 2011, http://www.jbiomedsem.com/qc/content/2/S2/S8
    • (2011) Journal of Biomedical Semantics , vol.2 , Issue.SUPPL. 2
    • Ozgur, A.1    Xiang, Z.2    Radev, D.3    He, Y.4
  • 18
    • 7944235807 scopus 로고    scopus 로고
    • From genome to vaccine - New immunoinformatics tools for vaccine design
    • DOI 10.1016/j.ymeth.2004.06.004, PII S1046202304001239, Bioinformatics in Vaccine Design
    • De Groot A. S., Berzofsky J. A., From genome to vaccinenew immunoinformatics tools for vaccine design Methods 2004 34 4 425 428 (Pubitemid 39469048)
    • (2004) Methods , vol.34 , Issue.4 , pp. 425-428
    • De Groot, A.S.1    Berzofsky, J.A.2
  • 19
    • 34247202685 scopus 로고    scopus 로고
    • New tools, new approaches and new ideas for vaccine development
    • DOI 10.1586/14760584.6.2.125
    • De Groot A. S., Moise L., New tools, new approaches and new ideas for vaccine development Expert Review of Vaccines 2007 6 2 125 127 (Pubitemid 46607448)
    • (2007) Expert Review of Vaccines , vol.6 , Issue.2 , pp. 125-127
    • De Groot, A.S.1    Moise, L.2
  • 20
    • 0035216767 scopus 로고    scopus 로고
    • High-affinity T helper epitope induces complementary helper and APC polarization, increased CTL, and protection against viral infection
    • DOI 10.1172/JCI200113463
    • Ahlers J. D., Belyakov I. M., Thomas E. K., Berzofsky J. A., High-affinity T helper epitope induces complementary helper and APC polarization, increased CTL, and protection against viral infection The Journal of Clinical Investigation 2001 108 11 1677 1685 (Pubitemid 33149721)
    • (2001) Journal of Clinical Investigation , vol.108 , Issue.11 , pp. 1677-1685
    • Ahlers, J.D.1    Belyakov, I.M.2    Thomas, E.K.3    Berzofsky, J.A.4
  • 21
    • 33744955355 scopus 로고    scopus 로고
    • Thyrotropin receptor epitopes and their relation to histocompatibility leukocyte antigen-DR molecules in graves' disease
    • DOI 10.1210/jc.2005-2537
    • Inaba H., Martin W., De Groot A. S., Qin S., De Groot L. J., Thyrotropin receptor epitopes and their relation to histocompatibility leukocyte antigen-DR molecules in graves' disease Journal of Clinical Endocrinology and Metabolism 2006 91 6 2286 2294 (Pubitemid 43855019)
    • (2006) Journal of Clinical Endocrinology and Metabolism , vol.91 , Issue.6 , pp. 2286-2294
    • Inaba, H.1    Martin, W.2    De Groot, A.S.3    Qin, S.4    De Groot, L.J.5
  • 22
    • 0030890660 scopus 로고    scopus 로고
    • An interactive web site providing major histocompatibility ligand predictions: Application to HIV research
    • De Groot A. S., Jesdale B. M., Szu E., Schafer J. R., Chicz R. M., Deocampo G., An interactive web site providing major histocompatibility ligand predictions: application to HIV research AIDS Research and Human Retroviruses 1997 13 7 529 531 (Pubitemid 27190560)
    • (1997) AIDS Research and Human Retroviruses , vol.13 , Issue.7 , pp. 529-531
    • De Groot, A.S.1    Jesdale, B.M.2    Szu, E.3    Schafer, J.R.4    Chicz, R.M.5    Deocampo, G.6
  • 24
    • 14844318615 scopus 로고    scopus 로고
    • Analyzing Mycobacterium tuberculosis proteomes for candidate vaccine epitopes
    • DOI 10.1016/j.tube.2004.09.005
    • McMurry J., Sbai H., Gennaro M. L., Carter E. J., Martin W., De Groot A. S., Analyzing Mycobacterium tuberculosis proteomes for candidate vaccine epitopes Tuberculosis 2005 85 1-2 95 105 (Pubitemid 40431321)
    • (2005) Tuberculosis , vol.85 , Issue.1-2 SPEC. ISS. , pp. 95-105
    • McMurry, J.1    Sbai, H.2    Gennaro, M.L.3    Carter, E.J.4    Martin, W.5    De Groot, A.S.6
  • 25
    • 1842588003 scopus 로고    scopus 로고
    • +-Cytotoxic-T-Cell Responses to Novel Epitopes in Mycobacterium tuberculosis Superoxide Dismutase, Alanine Dehydrogenase, and Glutamine Synthetase
    • DOI 10.1128/IAI.72.4.2412-2415.2004
    • Dong Y., Demaria S., Sun X., Santori F. R., Jesdale B. M., De Groot A. S., Rom W. N., Bushkin Y., HLA-A2-restricted CD8-cytotoxic-T-Cell responses to novel epitopes in mycobacterium tuberculosis superoxide dismutase, alanine dehydrogenase, and glutamine synthetase Infection and Immunity 2004 72 4 2412 2415 (Pubitemid 38419962)
    • (2004) Infection and Immunity , vol.72 , Issue.4 , pp. 2412-2415
    • Dong, Y.1    Demaria, S.2    Sun, X.3    Santori, F.R.4    Jesdale, B.M.5    De Groot, A.S.6    Rom, W.N.7    Bushkin, Y.8
  • 27
    • 33645356185 scopus 로고    scopus 로고
    • Immunomics: Discovering new targets for vaccines and therapeutics
    • De Groot A. S., Immunomics: discovering new targets for vaccines and therapeutics Drug Discovery Today 2006 11 5-6 203 209
    • (2006) Drug Discovery Today , vol.11 , Issue.56 , pp. 203-209
    • De Groot, A.S.1
  • 28
    • 33947580575 scopus 로고    scopus 로고
    • Diversity of Francisella tularensis Schu4 antigens recognized by T lymphocytes after natural infections in humans: Identification of candidate epitopes for inclusion in a rationally designed tularemia vaccine
    • DOI 10.1016/j.vaccine.2007.01.039, PII S0264410X0700076X
    • McMurry J. A., Gregory S. H., Moise L., Rivera D., Buus S., De Groot A. S., Diversity of Francisella tularensis Schu4 antigens recognized by T lymphocytes after natural infections in humans: identification of candidate epitopes for inclusion in a rationally designed tularemia vaccine Vaccine 2007 25 16 3179 3191 (Pubitemid 46482760)
    • (2007) Vaccine , vol.25 , Issue.16 SPEC. ISS. , pp. 3179-3191
    • McMurry, J.A.1    Gregory, S.H.2    Moise, L.3    Rivera, D.4    Buus, S.5    De Groot, A.S.6
  • 29
    • 70350072668 scopus 로고    scopus 로고
    • In silico-accelerated identification of conserved and immunogenic variola/vaccinia T-cell epitopes
    • Moise L., McMurry J. A., Buus S., Frey S., Martin W. D., De Groot A. S., In silico-accelerated identification of conserved and immunogenic variola/vaccinia T-cell epitopes Vaccine 2009 27 46 6471 6479
    • (2009) Vaccine , vol.27 , Issue.46 , pp. 6471-6479
    • Moise, L.1    McMurry, J.A.2    Buus, S.3    Frey, S.4    Martin, W.D.5    De Groot, A.S.6
  • 30
    • 48249119885 scopus 로고    scopus 로고
    • Identification of genome-derived vaccine candidates conserved between human and mouse-adapted strains of H. pylori
    • Moise L., McMurry J. A., Pappo J., Lee D. S., Moss S. F., Martin W. D., De Groot A. S., Identification of genome-derived vaccine candidates conserved between human and mouse-adapted strains of H. pylori Human Vaccines 2008 4 3 219 223
    • (2008) Human Vaccines , vol.4 , Issue.3 , pp. 219-223
    • Moise, L.1    McMurry, J.A.2    Pappo, J.3    Lee, D.S.4    Moss, S.F.5    Martin, W.D.6    De Groot, A.S.7
  • 31
    • 14244261236 scopus 로고    scopus 로고
    • Private specificities of CD8 T cell responses control patterns of heterologous immunity
    • DOI 10.1084/jem.20041337
    • Kim S. K., Cornberg M., Wang X. Z., Chen H. D., Selin L. K., Welsh R. M., Private specificities of CD8 T cell responses control patterns of heterologous immunity Journal of Experimental Medicine 2005 201 4 523 533 (Pubitemid 40289543)
    • (2005) Journal of Experimental Medicine , vol.201 , Issue.4 , pp. 523-533
    • Kim, S.-K.1    Cornberg, M.2    Wang, X.Z.3    Chen, H.D.4    Selin, L.K.5    Welsh, R.M.6
  • 32
    • 36849091434 scopus 로고    scopus 로고
    • Bridging the knowledge gaps in vaccine design
    • DOI 10.1038/nbt1207-1361, PII NBT12071361
    • Rappuoli R., Bridging the knowledge gaps in vaccine design Nature Biotechnology 2007 25 12 1361 1366 (Pubitemid 350233122)
    • (2007) Nature Biotechnology , vol.25 , Issue.12 , pp. 1361-1366
    • Rappuoli, R.1
  • 33
    • 0025778041 scopus 로고
    • Peptide-induced conformational change of the class I heavy chain
    • Elliott T., Cerundolo V., Elvin J., Townsend A., Peptide-induced conformational change of the class I heavy chain Nature 1991 351 6325 402 406 (Pubitemid 21896607)
    • (1991) Nature , vol.351 , Issue.6325 , pp. 402-406
    • Elliott, T.1    Cerundolo, V.2    Elvin, J.3    Townsend, A.4
  • 34
    • 0025855156 scopus 로고
    • Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
    • Falk K., Rotzschke O., Stevanovic S., Jung G., Rammensee H. G., Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules Nature 1991 351 6324 290 296 (Pubitemid 21896578)
    • (1991) Nature , vol.351 , Issue.6324 , pp. 290-296
    • Falk, K.1    Rotzschke, O.2    Stevanovic, S.3    Jung, G.4    Rammensee, H.-G.5
  • 36
    • 0026591609 scopus 로고
    • Cellular studies on antigen presentation by class II MHC molecules
    • Unanue E. R., Cellular studies on antigen presentation by class II MHC molecules Current Opinion in Immunology 1992 4 1 63 69
    • (1992) Current Opinion in Immunology , vol.4 , Issue.1 , pp. 63-69
    • Unanue, E.R.1
  • 37
    • 0027217789 scopus 로고
    • Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
    • DOI 10.1038/364033a0
    • Brown J. H., Jardetzky T. S., Gorga J. C., Stern L. J., Urban R. G., Strominger J. L., Wiley D. C., Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1 Nature 1993 364 6432 33 39 (Pubitemid 23233452)
    • (1993) Nature , vol.364 , Issue.6432 , pp. 33-39
    • Brown, J.H.1    Jardetzky, T.S.2    Gorga, J.C.3    Stern, L.J.4    Urban, R.G.5    Strominger, J.L.6    Wiley, D.C.7
  • 39
    • 0027468145 scopus 로고
    • The biochemistry and cell biology and antigen processing and presentation
    • Germain R. N., Margulies D. H., The biochemistry and cell biology and antigen processing and presentation Annual Review of Immunology 1993 11 403 450 (Pubitemid 23115014)
    • (1993) Annual Review of Immunology , vol.11 , pp. 403-450
    • Germain, R.N.1    Margulies, D.H.2
  • 40
    • 0035141966 scopus 로고    scopus 로고
    • Antigen processing and recognition
    • DOI 10.1016/S0952-7915(00)00174-6
    • Cresswell P., Lanzavecchia A., Antigen processing and recognition Current Opinion in Immunology 2001 13 1 11 12 (Pubitemid 32096953)
    • (2001) Current Opinion in Immunology , vol.13 , Issue.1 , pp. 11-12
    • Cresswell, P.1    Lanzavecchia, A.2
  • 41
    • 17644370329 scopus 로고    scopus 로고
    • Cell biology of antigen processing in vitro and in vivo
    • DOI 10.1146/annurev.immunol.22.012703.104538
    • Trombetta E. S., Mellman I., Cell biology of antigen processing in vitro and in vivo Annual Review of Immunology 2005 23 975 1028 (Pubitemid 40563191)
    • (2005) Annual Review of Immunology , vol.23 , pp. 975-1028
    • Trombetta, E.S.1    Mellman, I.2
  • 42
    • 0029187303 scopus 로고
    • Analysis of the structure of naturally processed peptides bound by class i and class II major histocompatibility complex molecules
    • Appella E., Padlan E. A., Hunt D. F., Analysis of the structure of naturally processed peptides bound by class I and class II major histocompatibility complex molecules EXS 1995 73 105 119
    • (1995) EXS , vol.73 , pp. 105-119
    • Appella, E.1    Padlan, E.A.2    Hunt, D.F.3
  • 44
    • 0033388724 scopus 로고    scopus 로고
    • Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism
    • Sette A., Sidney J., Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism Immunogenetics 1999 50 3-4 201 212 (Pubitemid 30099525)
    • (1999) Immunogenetics , vol.50 , Issue.3-4 , pp. 201-212
    • Sette, A.1    Sidney, J.2
  • 45
    • 54849437047 scopus 로고    scopus 로고
    • Prediction of immunogenicity: In silico paradigms, ex vivo and in vivo correlates
    • De Groot A. S., McMurry J., Moise L., Prediction of immunogenicity: in silico paradigms, ex vivo and in vivo correlates Current Opinion in Pharmacology 2008 8 5 620 626
    • (2008) Current Opinion in Pharmacology , vol.8 , Issue.5 , pp. 620-626
    • De Groot, A.S.1    McMurry, J.2    Moise, L.3
  • 46
    • 44649123290 scopus 로고    scopus 로고
    • Identification of immunogenic HLA-B7 "achilles' heel" epitopes within highly conserved regions of HIV
    • De Groot A. S., Rivera D. S., McMurry J. A., Buus S., Martin W., Identification of immunogenic HLA-B7 "Achilles' heel" epitopes within highly conserved regions of HIV Vaccine 2008 26 24 3059 3071
    • (2008) Vaccine , vol.26 , Issue.24 , pp. 3059-3071
    • De Groot, A.S.1    Rivera, D.S.2    McMurry, J.A.3    Buus, S.4    Martin, W.5
  • 47
    • 7944235123 scopus 로고    scopus 로고
    • Engineering immunogenic consensus T helper epitopes for a cross-clade HIV vaccine
    • DOI 10.1016/j.ymeth.2004.06.003, PII S1046202304001306, Bioinformatics in Vaccine Design
    • De Groot A. S., Bishop E. A., Khan B., Lally M., Marcon L., Franco J., Mayer K. H., Carpenter C. C. J., Martin W., Engineering immunogenic consensus T helper epitopes for a cross-clade HIV vaccine Methods 2004 34 4 476 487 (Pubitemid 39469055)
    • (2004) Methods , vol.34 , Issue.4 , pp. 476-487
    • De Groot, A.S.1    Bishop, E.A.2    Khan, B.3    Lally, M.4    Marcon, L.5    Franco, J.6    Mayer, K.H.7    Carpenter, C.C.J.8    Martin, W.9
  • 49
    • 42949139524 scopus 로고    scopus 로고
    • A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
    • Wang P., Sidney J., Dow C., Mothé B., Sette A., Peters B., A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach PLoS Computational Biology 2008 4 4
    • (2008) PLoS Computational Biology , vol.4 , Issue.4
    • Wang, P.1    Sidney, J.2    Dow, C.3    Mothé, B.4    Sette, A.5    Peters, B.6
  • 51
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker K. C., Bednarek M. A., Coligan J. E., Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains Journal of Immunology 1994 152 1 163 175
    • (1994) Journal of Immunology , vol.152 , Issue.1 , pp. 163-175
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 52
    • 63749128279 scopus 로고    scopus 로고
    • Reducing risk, improving outcomes: Bioengineering less immunogenic protein therapeutics
    • De Groot A. S., Martin W., Reducing risk, improving outcomes: bioengineering less immunogenic protein therapeutics Clinical Immunology 2009 131 2 189 201
    • (2009) Clinical Immunology , vol.131 , Issue.2 , pp. 189-201
    • De Groot, A.S.1    Martin, W.2
  • 53
    • 42549105195 scopus 로고    scopus 로고
    • Evaluation of MHC class i peptide binding prediction servers: Applications for vaccine research
    • Lin H. H., Ray S., Tongchusak S., Reinherz E. L., Brusic V., Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research BMC Immunology 2008 9, article 8
    • (2008) BMC Immunology , vol.98
    • Lin, H.H.1    Ray, S.2    Tongchusak, S.3    Reinherz, E.L.4    Brusic, V.5
  • 54
    • 57649174707 scopus 로고    scopus 로고
    • Evaluation of MHC-II peptide binding prediction servers: Applications for vaccine research
    • ARTICLE S22
    • Lin H. H., Zhang G. L., Tongchusak S., Reinherz E. L., Brusic V., Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research BMC Bioinformatics 2008 9 12, article S22
    • (2008) BMC Bioinformatics , vol.9 , Issue.12
    • Lin, H.H.1    Zhang, G.L.2    Tongchusak, S.3    Reinherz, E.L.4    Brusic, V.5
  • 55
    • 38649118833 scopus 로고    scopus 로고
    • In silico tools for predicting peptides binding to HLA-class II molecules: More confusion than conclusion
    • DOI 10.1021/pr070527b
    • Gowthaman U., Agrewala J. N., In silico tools for predicting peptides binding to HLA-class II molecules: more confusion than conclusion Journal of Proteome Research 2008 7 1 154 163 (Pubitemid 351171127)
    • (2008) Journal of Proteome Research , vol.7 , Issue.1 , pp. 154-163
    • Gowthaman, U.1    Agrewala, J.N.2
  • 57
    • 18244371717 scopus 로고    scopus 로고
    • Cytosolic processing of proteasomal cleavage products can enhance the presentation efficiency of MHC-1 epitopes
    • Bulik S., Peters B., Ebeling C., Holzhtter H., Cytosolic processing of proteasomal cleavage products can enhance the presentation efficiency of MHC-1 epitopes Genome Informatics 2004 15 1 24 34
    • (2004) Genome Informatics , vol.15 , Issue.1 , pp. 24-34
    • Bulik, S.1    Peters, B.2    Ebeling, C.3    Holzhtter, H.4
  • 58
    • 0041589474 scopus 로고    scopus 로고
    • Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors
    • Peters B., Bulik S., Tampe R., Van Endert P. M., Holzhtter H. G., Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors Journal of Immunology 2003 171 4 1741 1749 (Pubitemid 36966457)
    • (2003) Journal of Immunology , vol.171 , Issue.4 , pp. 1741-1749
    • Peters, B.1    Bulik, S.2    Tampe, R.3    Van Endert, P.M.4    Holzhutter, H.-G.5
  • 59
    • 17844385106 scopus 로고    scopus 로고
    • The role of the proteasome in generating cytotoxic T-cell epitopes: Insights obtained from improved predictions of proteasomal cleavage
    • DOI 10.1007/s00251-005-0781-7
    • Nielsen M., Lundegaard C., Lund O., Kemir C., The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage Immunogenetics 2005 57 1-2 33 41 (Pubitemid 40591245)
    • (2005) Immunogenetics , vol.57 , Issue.1-2 , pp. 33-41
    • Nielsen, M.1    Lundegaard, C.2    Lund, O.3    Kesmir, C.4
  • 62
    • 77953149616 scopus 로고    scopus 로고
    • NetCTLpan: Pan-specific MHC class i pathway epitope predictions
    • Stranzl T., Larsen M. V., Lundegaard C., Nielsen M., NetCTLpan: pan-specific MHC class I pathway epitope predictions Immunogenetics 2010 62 6 357 368
    • (2010) Immunogenetics , vol.62 , Issue.6 , pp. 357-368
    • Stranzl, T.1    Larsen, M.V.2    Lundegaard, C.3    Nielsen, M.4
  • 63
    • 77956527183 scopus 로고    scopus 로고
    • A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers
    • Riemer A. B., Keskin D. B., Zhang G., A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers The Journal of Biological Chemistry 2010 285 29608 29622
    • (2010) The Journal of Biological Chemistry , vol.285 , pp. 29608-29622
    • Riemer, A.B.1    Keskin, D.B.2    Zhang, G.3
  • 65
    • 20344405720 scopus 로고    scopus 로고
    • 3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins
    • DOI 10.1002/jcc.20229
    • Schreiber A., Humbert M., Benz A., Dietrich U., 3D-Epitope-Explorer (3DEX): localization of conformational epitopes within three-dimensional structures of proteins Journal of Computational Chemistry 2005 26 9 879 887 (Pubitemid 40860391)
    • (2005) Journal of Computational Chemistry , vol.26 , Issue.9 , pp. 879-887
    • Schreiber, A.1    Humbert, M.2    Benz, A.3    Dietrich, U.4
  • 67
    • 45449086674 scopus 로고    scopus 로고
    • PEPITO: Improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
    • DOI 10.1093/bioinformatics/btn199
    • Sweredoski M. J., Baldi P., PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure Bioinformatics 2008 24 12 1459 1460 (Pubitemid 351851001)
    • (2008) Bioinformatics , vol.24 , Issue.12 , pp. 1459-1460
    • Sweredoski, M.J.1    Baldi, P.2
  • 68
    • 0022446684 scopus 로고
    • Continuous and discontinuous protein antigenic determinants
    • Barlow D. J., Edwards M. S., Thornton J. M., Continuous and discontinuous protein antigenic determinants Nature 1986 322 6081 747 748 (Pubitemid 16074126)
    • (1986) Nature , vol.322 , Issue.6081 , pp. 747-748
    • Barlow, D.J.1    Edwards, M.S.2    Thornton, J.M.3
  • 69
    • 11144246404 scopus 로고    scopus 로고
    • Benchmarking B cell epitope prediction: Underperformance of existing methods
    • DOI 10.1110/ps.041059505
    • Blythe M. J., Flower D. R., Benchmarking B cell epitope prediction: underperformance of existing methods Protein Science 2005 14 1 246 248 (Pubitemid 40054138)
    • (2005) Protein Science , vol.14 , Issue.1 , pp. 246-248
    • Blythe, M.J.1    Flower, D.R.2
  • 70
    • 67650215667 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes
    • Reimer U., Prediction of linear B-cell epitopes Methods in Molecular Biology 2009 524 335 344
    • (2009) Methods in Molecular Biology , vol.524 , pp. 335-344
    • Reimer, U.1
  • 72
    • 0024518070 scopus 로고
    • The structural requirements for class II (I-A(d))-restricted T cell recognition of influenza hemagglutinin: B cell epitopes define T cell epitopes
    • DOI 10.1002/eji.1830190317
    • Graham C. M., Barnett B. C., Hartlmayr I., Burt D. S., Faulkes R., Skehel J. J., Thomas D. B., The structural requirements for class II (I-A(d))-restricted T cell recognition of influenza hemagglutinin: b cell epitopes define T cell epitopes European Journal of Immunology 1989 19 3 523 528 (Pubitemid 19128561)
    • (1989) European Journal of Immunology , vol.19 , Issue.3 , pp. 523-528
    • Graham, C.M.1    Barnett, B.C.2    Hartlmayr, I.3    Burt, D.S.4    Faulkes, R.5    Skehel, J.J.6    Thomas, D.B.7
  • 74
    • 14844302633 scopus 로고    scopus 로고
    • HIV vaccine development by computer assisted design: The GAIA vaccine
    • DOI 10.1016/j.vaccine.2005.01.097
    • De Groot A. S., Marcon L., Bishop E. A., Rivera D., Kutzler M., Weiner D. B., Martin W., HIV vaccine development by computer assisted design: the GAIA vaccine Vaccine 2005 23 17-18 2136 2148 (Pubitemid 40341440)
    • (2005) Vaccine , vol.23 , Issue.17-18 , pp. 2136-2148
    • De Groot, A.S.1    Marcon, L.2    Bishop, E.A.3    Rivera, D.4    Kutzler, M.5    Weiner, D.B.6    Martin, W.7
  • 79
    • 77950380847 scopus 로고    scopus 로고
    • Using epitope predictions to evaluate efficacy and population coverage of the Mtb72f vaccine for tuberculosis
    • McNamara L. A., He Y., Yang Z., Using epitope predictions to evaluate efficacy and population coverage of the Mtb72f vaccine for tuberculosis BMC Immunology 2010 11, article 18
    • (2010) BMC Immunology , vol.1118
    • McNamara, L.A.1    He, Y.2    Yang, Z.3
  • 82
  • 83
    • 48249119885 scopus 로고    scopus 로고
    • Identification of genome-derived vaccine candidates conserved between human and mouse-adapted strains of H. pylori
    • Moise L., McMurry J. A., Pappo J., Lee D.-S., Moss S. F., Martin W. D., De Groot A. S., Identification of genome-derived vaccine candidates conserved between human and mouse-adapted strains of H. pylori Human Vaccines 2008 4 3 219 223
    • (2008) Human Vaccines , vol.4 , Issue.3 , pp. 219-223
    • Moise, L.1    McMurry, J.A.2    Pappo, J.3    Lee, D.-S.4    Moss, S.F.5    Martin, W.D.6    De Groot, A.S.7
  • 86
    • 0032526322 scopus 로고    scopus 로고
    • Combining diverse evidence for gene recognition in completely sequenced bacterial genomes
    • DOI 10.1093/nar/26.12.2941
    • Frishman D., Mironov A., Mewes H. W., Gelfand M., Combining diverse evidence for gene recognition in completely sequenced bacterial genomes Nucleic Acids Research 1998 26 12 2941 2947 (Pubitemid 28297528)
    • (1998) Nucleic Acids Research , vol.26 , Issue.12 , pp. 2941-2947
    • Frishman, D.1    Mironov, A.2    Mewes, H.-W.3    Gelfand, M.4
  • 87
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • Besemer J., Lomsadze A., Borodovsky M., GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions Nucleic Acids Research 2001 29 12 2607 2618 (Pubitemid 32600318)
    • (2001) Nucleic Acids Research , vol.29 , Issue.12 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 92
    • 33748714313 scopus 로고    scopus 로고
    • Automated bacterial genome analysis and annotation
    • DOI 10.1016/j.mib.2006.08.002, PII S136952740600124X, Antimicrobials/Genomics
    • Stothard P., Wishart D. S., Automated bacterial genome analysis and annotation Current Opinion in Microbiology 2006 9 5 505 510 (Pubitemid 44397633)
    • (2006) Current Opinion in Microbiology , vol.9 , Issue.5 , pp. 505-510
    • Stothard, P.1    Wishart, D.S.2
  • 94
    • 60849116153 scopus 로고    scopus 로고
    • Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology
    • ARTICLE S2
    • Tseng T. T., Tyler B. M., Setubal J. C., Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology BMC Microbiology 2009 9 1, article S2
    • (2009) BMC Microbiology , vol.9 , Issue.1
    • Tseng, T.T.1    Tyler, B.M.2    Setubal, J.C.3
  • 97
    • 33748878164 scopus 로고    scopus 로고
    • Methods for predicting bacterial protein subcellular localization
    • DOI 10.1038/nrmicro1494, PII NRMICRO1494
    • Gardy J. L., Brinkman F. S. L., Methods for predicting bacterial protein subcellular localization Nature Reviews Microbiology 2006 4 10 741 751 (Pubitemid 44420125)
    • (2006) Nature Reviews Microbiology , vol.4 , Issue.10 , pp. 741-751
    • Gardy, J.L.1    Brinkman, F.S.L.2
  • 98
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
    • Yu C. S., Lin C. J., Hwang J. K., Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions Protein Science 2004 13 5 1402 1406
    • (2004) Protein Science , vol.13 , Issue.5 , pp. 1402-1406
    • Yu, C.S.1    Lin, C.J.2    Hwang, J.K.3
  • 99
    • 1542400030 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins using machine-learned classifiers
    • DOI 10.1093/bioinformatics/btg447
    • Lu Z., Szafron D., Greiner R., Lu P., Wishart D. S., Poulin B., Anvik J., Macdonell C., Eisner R., Predicting subcellular localization of proteins using machine-learned classifiers Bioinformatics 2004 20 4 547 556 (Pubitemid 38344335)
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 547-556
    • Lu, Z.1    Szafron, D.2    Greiner, R.3    Lu, P.4    Wishart, D.S.5    Poulin, B.6    Anvik, J.7    Macdonell, C.8    Eisner, R.9
  • 102
    • 34247884459 scopus 로고    scopus 로고
    • A Systematics for Discovering the Fundamental Units of Bacterial Diversity
    • Cohan F. M., Perry E. B., A Systematics for Discovering the Fundamental Units of Bacterial Diversity Current Biology 2007 17 10 R373 R386
    • (2007) Current Biology , vol.17 , Issue.10
    • Cohan, F.M.1    Perry, E.B.2
  • 108
    • 33845887188 scopus 로고    scopus 로고
    • Towards a universal group B Streptococcus vaccine using multistrain genome analysis
    • DOI 10.1586/14760584.5.5.687
    • Tettelin H., Medini D., Donati C., Masignani V., Towards a universal group B Streptococcus vaccine using multistrain genome analysis Expert Review of Vaccines 2006 5 5 687 694 (Pubitemid 46021049)
    • (2006) Expert Review of Vaccines , vol.5 , Issue.5 , pp. 687-694
    • Tettelin, H.1    Medini, D.2    Donati, C.3    Masignani, V.4
  • 110
    • 77955360252 scopus 로고    scopus 로고
    • Vaxign: The first web-based vaccine design program for reverse vaccinology and applications for vaccine development
    • He Y., Xiang Z., Mobley H. L.T., Vaxign: the first web-based vaccine design program for reverse vaccinology and applications for vaccine development Journal of Biomedicine and Biotechnology 2010 2010 2010
    • (2010) Journal of Biomedicine and Biotechnology , vol.2010 , pp. 2010
    • He, Y.1    Xiang, Z.2    Mobley, H.L.T.3
  • 111
    • 0035843908 scopus 로고    scopus 로고
    • Genes lost and genes found: Evolution of bacterial pathogenesis and symbiosis
    • DOI 10.1126/science.1058543
    • Ochman H., Moran N. A., Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis Science 2001 292 5519 1096 1098 (Pubitemid 32440919)
    • (2001) Science , vol.292 , Issue.5519 , pp. 1096-1098
    • Ochman, H.1    Moran, N.A.2
  • 112
    • 14644435046 scopus 로고    scopus 로고
    • SPAAN: A software program for prediction of adhesins and adhesin-like proteins using neural networks
    • DOI 10.1093/bioinformatics/bti028
    • Sachdeva G., Kumar K., Jain P., Ramachandran S., SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks Bioinformatics 2005 21 4 483 491 (Pubitemid 40310235)
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 483-491
    • Sachdeva, G.1    Kumar, K.2    Jain, P.3    Ramachandran, S.4
  • 113
  • 114
    • 77957300395 scopus 로고    scopus 로고
    • Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN
    • He Y., Xiang Z., Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN Immunome Research 2010 6 supplement 1 S5
    • (2010) Immunome Research , vol.6 , Issue.SUPPL. 1 , pp. 5
    • He, Y.1    Xiang, Z.2
  • 116
    • 33646569665 scopus 로고    scopus 로고
    • Post-genomic vaccine development
    • DOI 10.1016/j.febslet.2006.04.084, PII S0014579306005412
    • Serruto D., Rappuoli R., Post-genomic vaccine development The FEBS Letters 2006 580 12 2985 2992 (Pubitemid 43729171)
    • (2006) FEBS Letters , vol.580 , Issue.12 , pp. 2985-2992
    • Serruto, D.1    Rappuoli, R.2
  • 117
    • 33748681096 scopus 로고    scopus 로고
    • Microbial genomes and vaccine design: Refinements to the classical reverse vaccinology approach
    • DOI 10.1016/j.mib.2006.07.003, PII S1369527406001226, Antimicrobials/Genomics
    • Mora M., Donati C., Medini D., Covacci A., Rappuoli R., Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach Current Opinion in Microbiology 2006 9 5 532 536 (Pubitemid 44397631)
    • (2006) Current Opinion in Microbiology , vol.9 , Issue.5 , pp. 532-536
    • Mora, M.1    Donati, C.2    Medini, D.3    Covacci, A.4    Rappuoli, R.5
  • 118
    • 58149235290 scopus 로고    scopus 로고
    • Tools for interpreting large-scale protein profiling in microbiology
    • Hendrickson E. L., Lamont R. J., Hackett M., Tools for interpreting large-scale protein profiling in microbiology Journal of Dental Research 2008 87 11 1004 1015
    • (2008) Journal of Dental Research , vol.87 , Issue.11 , pp. 1004-1015
    • Hendrickson, E.L.1    Lamont, R.J.2    Hackett, M.3
  • 119
    • 29544434311 scopus 로고    scopus 로고
    • Associating phenotypes with molecular events: Recent statistical advances and challenges underpinning microarray experiments
    • DOI 10.1007/s10142-005-0006-z
    • Liang Y., Kelemen A., Associating phenotypes with molecular events: recent statistical advances and challenges underpinning microarray experiments Functional and Integrative Genomics 2006 6 1 1 13 (Pubitemid 43013204)
    • (2006) Functional and Integrative Genomics , vol.6 , Issue.1 , pp. 1-13
    • Liang, Y.1    Kelemen, A.2
  • 122
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • DOI 10.1073/pnas.011404098
    • Li C., Wong W. H., Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection Proceedings of the National Academy of Sciences of the United States of America 2001 98 1 31 36 (Pubitemid 32095858)
    • (2001) Proceedings of the National Academy of Sciences of the United States of America , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 124
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • Pan W., A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments Bioinformatics 2002 18 4 546 554 (Pubitemid 34521044)
    • (2002) Bioinformatics , vol.18 , Issue.4 , pp. 546-554
    • Pan, W.1
  • 125
    • 33747882889 scopus 로고    scopus 로고
    • Analysis of variance of microarray data
    • Ayroles J. F., Gibson G., Analysis of variance of microarray data Methods in Enzymology 2006 411 214 233
    • (2006) Methods in Enzymology , vol.411 , pp. 214-233
    • Ayroles, J.F.1    Gibson, G.2
  • 127
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • ARTICLE 3
    • Smyth G. K., Linear models and empirical bayes methods for assessing differential expression in microarray experiments Statistical Applications in Genetics and Molecular Biology 2004 3 1, article 3
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Smyth, G.K.1
  • 128
    • 0035342091 scopus 로고    scopus 로고
    • Basic microarray analysis: Grouping and feature reduction
    • DOI 10.1016/S0167-7799(01)01599-2, PII S0167779901015992
    • Raychaudhuri S., Sutphin P. D., Chang J. T., Altman R. B., Basic microarray analysis: grouping and feature reduction Trends in Biotechnology 2001 19 5 189 193 (Pubitemid 32280863)
    • (2001) Trends in Biotechnology , vol.19 , Issue.5 , pp. 189-193
    • Raychaudhuri, S.1    Sutphin, P.D.2    Chang, J.T.3    Altman, R.B.4
  • 130
    • 34547915217 scopus 로고    scopus 로고
    • CRCView: A web server for analyzing and visualizing microarray gene expression data using model-based clustering
    • DOI 10.1093/bioinformatics/btm238
    • Xiang Z., Qin Z. S., He Y., CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering Bioinformatics 2007 23 14 1843 1845 (Pubitemid 47250322)
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1843-1845
    • Xiang, Z.1    Qin, Z.S.2    He, Y.3
  • 132
    • 27344456836 scopus 로고    scopus 로고
    • Application of a priori established gene sets to discover biologically important differential expression in microarray data
    • DOI 10.1073/pnas.0507477102
    • Bild A., Febbo P. G., Application of a priori established gene sets to discover biologically important differential expression in microarray data Proceedings of the National Academy of Sciences of the United States of America 2005 102 43 15278 15279 (Pubitemid 41528046)
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.43 , pp. 15278-15279
    • Bild, A.1    Febbo, P.G.2
  • 133
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D. A. W., Sherman B. T., Lempicki R. A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nature Protocols 2009 4 1 44 57
    • (2009) Nature Protocols , vol.4 , Issue.1 , pp. 44-57
    • Huang, D.A.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 134
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies with a group of genes
    • DOI 10.1093/bioinformatics/bth088
    • Beibarth T., Speed T. P., GOstat: find statistically overrepresented Gene Ontologies with a group of genes Bioinformatics 2004 20 9 1464 1465 (Pubitemid 38931420)
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 136
    • 34249853738 scopus 로고    scopus 로고
    • Computational and experimental approaches for modeling gene regulatory networks
    • DOI 10.2174/138161207780765945
    • Goutsias J., Lee N. H., Computational and experimental approaches for modeling gene regulatory networks Current Pharmaceutical Design 2007 13 14 1415 1436 (Pubitemid 46860866)
    • (2007) Current Pharmaceutical Design , vol.13 , Issue.14 , pp. 1415-1436
    • Goutsias, J.1    Lee, N.H.2
  • 137
    • 34547131280 scopus 로고    scopus 로고
    • A robust measure of correlation between two genes on a microarray
    • Hardin J., Mitani A., Hicks L., VanKoten B., A robust measure of correlation between two genes on a microarray BMC Bioinformatics 2007 8, Article 220
    • (2007) BMC Bioinformatics , vol.8220
    • Hardin, J.1    Mitani, A.2    Hicks, L.3    Vankoten, B.4
  • 138
    • 33947131802 scopus 로고    scopus 로고
    • New insights into mathematical modeling of the immune system
    • PII IR361157
    • Morel P. A., Ta'asan S., Morel B. F., Kirschner D. E., Flynn J. L., New insights into mathematical modeling of the immune system Immunologic Research 2006 36 13 157 165 (Pubitemid 46398592)
    • (2006) Immunologic Research , vol.36 , Issue.1-3 , pp. 157-165
    • Morel, P.A.1    Ta'asan, S.2    Morel, B.F.3    Kirschner, D.E.4    Flynn, J.L.5
  • 141
    • 34548709663 scopus 로고    scopus 로고
    • MiniTUBA: Medical inference by network integration of temporal data using Bayesian analysis
    • DOI 10.1093/bioinformatics/btm372
    • Xiang Z., Minter R. M., Bi X., Woolf P. J., He Y., miniTUBA: medical inference by network integration of temporal data using Bayesian analysis Bioinformatics 2007 23 18 2423 2432 (Pubitemid 47423840)
    • (2007) Bioinformatics , vol.23 , Issue.18 , pp. 2423-2432
    • Xiang, Z.1    Minter, R.M.2    Bi, X.3    Woolf, P.J.4    He, Y.5
  • 143
    • 12344259602 scopus 로고    scopus 로고
    • Advances to Bayesian network inference for generating causal networks from observational biological data
    • DOI 10.1093/bioinformatics/bth448
    • Yu J., Smith V. A., Wang P. P., Hartemink A. J., Jarvis E. D., Advances to Bayesian network inference for generating causal networks from observational biological data Bioinformatics 2004 20 18 3594 3603 (Pubitemid 40136795)
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3594-3603
    • Yu, J.1    Smith, V.A.2    Wang, P.P.3    Hartemink, A.J.4    Jarvis, E.D.5
  • 144
    • 0035850987 scopus 로고    scopus 로고
    • Gene expression microarrays: A 21st century tool for directed vaccine design
    • DOI 10.1016/S0264-410X(01)00319-X, PII S0264410X0100319X
    • Dhiman N., Bonilla R., O'Kane J D., Poland G. A., Gene expression microarrays: a 21st century tool for directed vaccine design Vaccine 2001 20 1-2 22 30 (Pubitemid 32910227)
    • (2001) Vaccine , vol.20 , Issue.1-2 , pp. 22-30
    • Dhiman, N.1    Bonilla, R.2    O'Kane J, D.3    Poland, G.A.4
  • 145
    • 33748648610 scopus 로고    scopus 로고
    • DNA microarrays - An armory for combating infectious diseases in the new century
    • Chen T., DNA microarraysan armory for combating infectious diseases in the new century Infectious DisordersDrug Targets 2006 6 3 263 279 (Pubitemid 44383195)
    • (2006) Infectious Disorders - Drug Targets , vol.6 , Issue.3 , pp. 263-279
    • Chen, T.1
  • 154
    • 60049090192 scopus 로고    scopus 로고
    • Immunoinformatics and its relevance to understanding human immune disease
    • Brusic V., Petrovsky N., Immunoinformatics and its relevance to understanding human immune disease Expert Review of Clinical Immunology 2005 1 145 157
    • (2005) Expert Review of Clinical Immunology , vol.1 , pp. 145-157
    • Brusic, V.1    Petrovsky, N.2
  • 155
    • 79952567961 scopus 로고    scopus 로고
    • A review of mathematical models of influenza A infections within a host or cell culture: Lessons learned and challenges ahead
    • Beauchemin C. A.A., Handel A., A review of mathematical models of influenza A infections within a host or cell culture: lessons learned and challenges ahead BMC Public Health 2011 11 supplement 1 S7
    • (2011) BMC Public Health , vol.11 , Issue.SUPPL. 1 , pp. 7
    • Beauchemin, C.A.A.1    Handel, A.2
  • 156
    • 33947236071 scopus 로고    scopus 로고
    • Toward a multiscale model of antigen presentation in immunity
    • DOI 10.1111/j.1600-065X.2007.00490.x
    • Kirschner D. E., Chang S. T., Riggs T. W., Perry N., Linderman J. J., Toward a multiscale model of antigen presentation in immunity Immunological Reviews 2007 216 1 93 118 (Pubitemid 46426510)
    • (2007) Immunological Reviews , vol.216 , Issue.1 , pp. 93-118
    • Kirschner, D.E.1    Chang, S.T.2    Riggs, T.W.3    Perry, N.4    Linderman, J.J.5
  • 160
    • 33947244915 scopus 로고    scopus 로고
    • Understanding the mechanisms and limitations of immune control of HIV
    • DOI 10.1111/j.1600-065X.2006.00485.x
    • Davenport M. P., Ribeiro R. M., Zhang L., Wilson D. P., Perelson A. S., Understanding the mechanisms and limitations of immune control of HIV Immunological Reviews 2007 216 1 164 175 (Pubitemid 46426507)
    • (2007) Immunological Reviews , vol.216 , Issue.1 , pp. 164-175
    • Davenport, M.P.1    Ribeiro, R.M.2    Zhang, L.3    Wilson, D.P.4    Perelson, A.S.5
  • 161
    • 64449088759 scopus 로고    scopus 로고
    • Infection dynamics and virus-induced apoptosis in cell culture-based influenza vaccine production-Flow cytometry and mathematical modeling
    • Schulze-Horsel J., Schulze M., Agalaridis G., Genzel Y., Reichl U., Infection dynamics and virus-induced apoptosis in cell culture-based influenza vaccine production-Flow cytometry and mathematical modeling Vaccine 2009 27 20 2712 2722
    • (2009) Vaccine , vol.27 , Issue.20 , pp. 2712-2722
    • Schulze-Horsel, J.1    Schulze, M.2    Agalaridis, G.3    Genzel, Y.4    Reichl, U.5
  • 162
    • 39449117720 scopus 로고    scopus 로고
    • Cost-effectiveness analyses of vaccination programmes: A focused review of modelling approaches
    • Kim S. Y., Goldie S. J., Cost-effectiveness analyses of vaccination programmes: a focused review of modelling approaches PharmacoEconomics 2008 26 3 191 215 (Pubitemid 351271379)
    • (2008) PharmacoEconomics , vol.26 , Issue.3 , pp. 191-215
    • Kim, S.-Y.1    Goldie, S.J.2
  • 165
    • 41549128397 scopus 로고    scopus 로고
    • The impact of indirect (herd) protection on the cost-effectiveness of pneumococcal conjugate vaccine
    • DOI 10.1016/j.clinthera.2008.02.003, PII S0149291808000866
    • Isaacman D. J., Strutton D. R., Kalpas E. A., Horowicz-Mehler N., Stern L. S., Casciano R., Ciuryla V., The impact of indirect (herd) protection on the cost-effectiveness of pneumococcal conjugate vaccine Clinical Therapeutics 2008 30 2 341 357 (Pubitemid 351474375)
    • (2008) Clinical Therapeutics , vol.30 , Issue.2 , pp. 341-357
    • Isaacman, D.J.1    Strutton, D.R.2    Kalpas, E.A.3    Horowicz-Mehler, N.4    Stern, L.S.5    Casciano, R.6    Ciuryla, V.7
  • 166
    • 78049276724 scopus 로고    scopus 로고
    • In silico modeling and in vivo efficacy of cancer-preventive vaccinations
    • Palladini A., Nicoletti G., Pappalardo F., In silico modeling and in vivo efficacy of cancer-preventive vaccinations Cancer Research 2010 70 7775 7763
    • (2010) Cancer Research , vol.70 , pp. 7775-7763
    • Palladini, A.1    Nicoletti, G.2    Pappalardo, F.3
  • 168
    • 20844453250 scopus 로고    scopus 로고
    • Modeling and simulation of cancer immunoprevention vaccine
    • DOI 10.1093/bioinformatics/bti426
    • Pappalardo F., Lollini P. L., Castiglione F., Motta S., Modeling and simulation of cancer immunoprevention vaccine Bioinformatics 2005 21 12 2891 2897 (Pubitemid 40862289)
    • (2005) Bioinformatics , vol.21 , Issue.12 , pp. 2891-2897
    • Pappalardo, F.1    Lollini, P.-L.2    Castiglione, F.3    Motta, S.4
  • 169
    • 33748126338 scopus 로고    scopus 로고
    • Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator
    • Lollini P.-L., Motta S., Pappalardo F., Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator BMC Bioinformatics 2006 7, article 352
    • (2006) BMC Bioinformatics , vol.7352
    • Lollini, P.-L.1    Motta, S.2    Pappalardo, F.3
  • 172
    • 0033785485 scopus 로고    scopus 로고
    • Herd immunity and herd effect: New insights and definitions
    • John T. J., Samuel R., Herd immunity and herd effect: new insights and definitions European Journal of Epidemiology 2000 16 7 601 606
    • (2000) European Journal of Epidemiology , vol.16 , Issue.7 , pp. 601-606
    • John, T.J.1    Samuel, R.2
  • 173
    • 0027927057 scopus 로고
    • Recommendations of the International Task Force for Disease Eradication
    • Recommendations of the International Task Force for Disease Eradication MMWRRecommendations and Reports 1993 42 16 1 38
    • (1993) MMWRRecommendations and Reports , vol.42 , Issue.16 , pp. 1-38
  • 174
    • 79952459799 scopus 로고    scopus 로고
    • General recommendations on immunizationrecommendations of the Advisory Committee on Immunization Practices (ACIP)
    • National Center For Immunization And Respiratory Diseases
    • National Center for Immunization and Respiratory Diseases, General recommendations on immunizationrecommendations of the Advisory Committee on Immunization Practices (ACIP) MMWRRecommendations and Reports 2011 60 2 1 64
    • (2011) MMWRRecommendations and Reports , vol.60 , Issue.2 , pp. 1-64
  • 175
    • 0033050539 scopus 로고    scopus 로고
    • Immunization registries in the United States: Implications for the practice of public health in a changing health care system
    • DOI 10.1146/annurev.publhealth.20.1.231
    • Wood D., Saarlas K. N., Inkelas M., Matyas B. T., Immunization registries in the United States: implications for the practice of public health in a changing health care system Annual Review of Public Health 1999 20 231 255 (Pubitemid 29242579)
    • (1999) Annual Review of Public Health , vol.20 , pp. 231-255
    • Wood, D.1    Saarlas, K.N.2    Inkelas, M.3    Matyas, B.T.4
  • 177
    • 67650713313 scopus 로고    scopus 로고
    • The Australian Childhood Immunisation Register-A model for universal immunisation registers?
    • Hull B. P., Deeks S. L., McIntyre P. B., The Australian Childhood Immunisation Register-A model for universal immunisation registers? Vaccine 2009 27 37 5054 5060
    • (2009) Vaccine , vol.27 , Issue.37 , pp. 5054-5060
    • Hull, B.P.1    Deeks, S.L.2    McIntyre, P.B.3
  • 178
    • 17844378509 scopus 로고    scopus 로고
    • National standards for immunization coverage assessment: Recommendations from the Canadian Immunization Registry Network
    • National standards for immunization coverage assessment: recommendations from the Canadian Immunization Registry Network Canada Communicable Disease Report 2005 31 93 97
    • (2005) Canada Communicable Disease Report , vol.31 , pp. 93-97
  • 180
    • 52649098976 scopus 로고    scopus 로고
    • Immunizations: The first step in a personal health record to empower patients
    • Popovich M. L., Aramini J. J., Garcia M., Immunizations: the first step in a personal health record to empower patients Stud Health Technol Inform 2008 137 286 295
    • (2008) Stud Health Technol Inform , vol.137 , pp. 286-295
    • Popovich, M.L.1    Aramini, J.J.2    Garcia, M.3
  • 181
    • 31944442536 scopus 로고    scopus 로고
    • Determining indications for adult vaccination: Patient self-assessment, medical record, or both?
    • DOI 10.1016/j.vaccine.2005.07.093, PII S0264410X05007772
    • Fishbein D. B., Willis B. C., Cassidy W. M., Marioneaux D., Bachino C., Waddington T., Wortley P., Determining indications for adult vaccination: patient self-assessment, medical record, or both? Vaccine 2006 24 6 803 818 (Pubitemid 43190088)
    • (2006) Vaccine , vol.24 , Issue.6 , pp. 803-818
    • Fishbein, D.B.1    Willis, B.C.2    Cassidy, W.M.3    Marioneaux, D.4    Bachino, C.5    Waddington, T.6    Wortley, P.7
  • 182
    • 34249910109 scopus 로고    scopus 로고
    • The success of an immunization information system in the wake of Hurricane Katrina
    • DOI 10.1542/peds.2006-3251
    • Boom J. A., Dragsbaek A. C., Nelson C. S., The success of an immunization information system in the wake of Hurricane Katrina Pediatrics 2007 119 6 1213 1217 (Pubitemid 46871285)
    • (2007) Pediatrics , vol.119 , Issue.6 , pp. 1213-1217
    • Boom, J.A.1    Dragsbaek, A.C.2    Nelson, C.S.3
  • 183
    • 67650094922 scopus 로고    scopus 로고
    • Identifying infants at increased risk for late initiation of immunizations: Maternal and provider characteristics
    • Feemster K. A., Spain C. V., Eberhart M., Pati S., Watson B., Identifying infants at increased risk for late initiation of immunizations: maternal and provider characteristics Public Health Reports 2009 124 1 42 53
    • (2009) Public Health Reports , vol.124 , Issue.1 , pp. 42-53
    • Feemster, K.A.1    Spain, C.V.2    Eberhart, M.3    Pati, S.4    Watson, B.5
  • 185
  • 188
  • 192
    • 0037654702 scopus 로고    scopus 로고
    • Vaccine safety surveillance using large linked databases: Opportunities, hazards and proposed guidelines
    • DOI 10.1586/14760584.2.1.21
    • Verstraeten T., DeStefano F., Chen R. T., Miller E., Vaccine safety surveillance using large linked databases: opportunities, hazards and proposed guidelines Expert Review of Vaccines 2003 2 1 21 29 (Pubitemid 36559936)
    • (2003) Expert Review of Vaccines , vol.2 , Issue.1 , pp. 21-29
    • Verstraeten, T.1    DeStefano, F.2    Chen, R.T.3    Miller, E.4
  • 193
    • 79952474136 scopus 로고    scopus 로고
    • The Vaccine Safety Datalink: A model for monitoring immunization safety
    • Baggs J., Gee J., Lewis E., The Vaccine Safety Datalink: a model for monitoring immunization safety Pediatrics 2011 127 supplement 1 S45 S53
    • (2011) Pediatrics , vol.127 , Issue.SUPPL. 1
    • Baggs, J.1    Gee, J.2    Lewis, E.3
  • 197
    • 0028954836 scopus 로고
    • A new method for active surveillance of adverse events from diphtheria/tetanus/pertussis and measles/mumps/rubella vaccines
    • Farrington P., Pugh S., Colville A., Flower A., Nash J., Morgan-Capner P., Rush M., Miller E., A new method for active surveillance of adverse events from diphtheria/tetanus/pertussis and measles/mumps/rubella vaccines The Lancet 1995 345 8949 567 569
    • (1995) The Lancet , vol.345 , Issue.8949 , pp. 567-569
    • Farrington, P.1    Pugh, S.2    Colville, A.3    Flower, A.4    Nash, J.5    Morgan-Capner, P.6    Rush, M.7    Miller, E.8
  • 199
    • 69549137770 scopus 로고    scopus 로고
    • New York, NY, USA Penguin
    • Tapscott D., Wikinomics 2008 New York, NY, USA Penguin
    • (2008) Wikinomics
    • Tapscott, D.1
  • 204
    • 0034010604 scopus 로고    scopus 로고
    • Ukraine, 1992: First assessment of diphtheria vaccine effectiveness during the recent resurgence of diphtheria in the Former Soviet Union
    • Chen R. T., Hardy I. R., Rhodes P. H., Tyshchenko D. K., Moiseeva A.V., Marievsky V. F., Ukraine, 1992: first assessment of diphtheria vaccine effectiveness during the recent resurgence of diphtheria in the Former Soviet Union Journal of Infectious Diseases 2000 181 supplement 1 S178 S183
    • (2000) Journal of Infectious Diseases , vol.181 , Issue.SUPPL. 1
    • Chen, R.T.1    Hardy, I.R.2    Rhodes, P.H.3    Tyshchenko, D.K.4    Moiseeva, A.V.5    Marievsky, V.F.6
  • 205
    • 34247094478 scopus 로고    scopus 로고
    • Protective efficacy of a monovalent oral type 1 poliovirus vaccine: A case-control study
    • DOI 10.1016/S0140-6736(07)60531-5, PII S0140673607605315
    • Grassly N. C., Wenger J., Durrani S., Bahl S., Deshpande J. M., Sutter R. W., Heymann D. L., Aylward R. B., Protective efficacy of a monovalent oral type 1 poliovirus vaccine: a case-control study The Lancet 2007 369 9570 1356 1362 (Pubitemid 46613904)
    • (2007) Lancet , vol.369 , Issue.9570 , pp. 1356-1362
    • Grassly, N.C.1    Wenger, J.2    Durrani, S.3    Bahl, S.4    Deshpande, J.M.5    Sutter, R.W.6    Heymann, D.L.7    Aylward, R.B.8
  • 206
    • 0003960602 scopus 로고
    • Oxford, UK Blackwell Scientific Publications
    • McNeill W. H., Plagues and Peoples 1976 Oxford, UK Blackwell Scientific Publications
    • (1976) Plagues and Peoples
    • McNeill, W.H.1
  • 208
    • 0020004047 scopus 로고
    • Directly transmitted infectious diseases: Control by vaccination
    • Anderson R. M., May R. M., Directly transmitted infectious diseases: control by vaccination Science 1982 215 4536 1053 1060 (Pubitemid 12114085)
    • (1982) Science , vol.215 , Issue.4536 , pp. 1053-1060
    • Anderson, R.M.1    May, R.M.2
  • 211
    • 2442544602 scopus 로고    scopus 로고
    • The theory of measles elimination: Implications for the design of elimination strategies
    • Gay N. J., The theory of measles elimination: implications for the design of elimination strategies Journal of Infectious Diseases 2004 189 1 S27 S35
    • (2004) Journal of Infectious Diseases , vol.189 , Issue.1
    • Gay, N.J.1
  • 212
    • 0028937480 scopus 로고
    • Predicting the impact of measles vaccination in England and Wales: Model validation and analysis of policy options
    • Babad H. R., Nokes D. J., Gay N. J., Miller E., Morgan-Capner P., Anderson R. M., Predicting the impact of measles vaccination in England and Wales: model validation and analysis of policy options Epidemiology and Infection 1995 114 2 319 344
    • (1995) Epidemiology and Infection , vol.114 , Issue.2 , pp. 319-344
    • Babad, H.R.1    Nokes, D.J.2    Gay, N.J.3    Miller, E.4    Morgan-Capner, P.5    Anderson, R.M.6
  • 213
    • 27944442333 scopus 로고    scopus 로고
    • Reducing the global burden of congenital rubella syndrome: Report of the World Health Organization Steering Committee on Research Related to Measles and Rubella Vaccines and Vaccination, June 2004
    • DOI 10.1086/497607
    • Best J. M., Castillo-Solorzano C., Spika J. S., Icenogle J., Glasser J. W., Gay N. J., Andrus J., Arvin A. M., Reducing the global burden of congenital rubella syndrome: report of the World Health Organization Steering Committee on Research Related to Measles and Rubella Vaccines and Vaccination, June 2004 Journal of Infectious Diseases 2005 192 11 1890 1897 (Pubitemid 41681886)
    • (2005) Journal of Infectious Diseases , vol.192 , Issue.11 , pp. 1890-1897
    • Best, J.M.1    Castillo-Solorzano, C.2    Spika, J.S.3    Icenogle, J.4    Glasser, J.W.5    Gay, N.J.6    Andrus, J.7    Arvin, A.M.8
  • 214
    • 33744476125 scopus 로고    scopus 로고
    • Mathematical model of HPV provides insight into impacts of risk factors and vaccine
    • DOI 10.1371/journal.pmed.0030164
    • Kim J. J., Mathematical model of HPV provides insight into impacts of risk factors and vaccine PLoS Medicine 2006 3 5, article e164 587 588 (Pubitemid 43807019)
    • (2006) PLoS Medicine , vol.3 , Issue.5 , pp. 587-588
    • Kim, J.J.1
  • 215
    • 33745836878 scopus 로고    scopus 로고
    • Strategies for mitigating an influenza pandemic
    • DOI 10.1038/nature04795, PII NATURE04795
    • Ferguson N. M., Cummings D. A. T., Fraser C., Cajka J. C., Cooley P. C., Burke D. S., Strategies for mitigating an influenza pandemic Nature 2006 442 7101 448 452 (Pubitemid 44264793)
    • (2006) Nature , vol.442 , Issue.7101 , pp. 448-452
    • Ferguson, N.M.1    Cummings, D.A.T.2    Fraser, C.3    Cajka, J.C.4    Cooley, P.C.5    Burke, D.S.6
  • 216
    • 2542421890 scopus 로고    scopus 로고
    • Short- and long-term effects of pneumococcal conjugate vaccination of children on penicillin resistance
    • DOI 10.1128/AAC.48.6.2206-2213.2004
    • Temime L., Guillemot D., Bolle P. Y., Short- and long-term effects of pneumococcal conjugate vaccination of children on penicillin resistance Antimicrobial Agents and Chemotherapy 2004 48 6 2206 2213 (Pubitemid 38691620)
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , Issue.6 , pp. 2206-2213
    • Temime, L.1    Guillemot, D.2    Boelle, P.Y.3
  • 217
    • 67049127547 scopus 로고    scopus 로고
    • Whole genome identification of Mycobacterium tuberculosis vaccine candidates by comprehensive data mining and bioinformatic analyses
    • Zvi A., Ariel N., Fulkerson J., Sadoff J. C., Shafferman A., Whole genome identification of Mycobacterium tuberculosis vaccine candidates by comprehensive data mining and bioinformatic analyses BMC Medical Genomics 2008 1 18
    • (2008) BMC Medical Genomics , vol.1 , pp. 18
    • Zvi, A.1    Ariel, N.2    Fulkerson, J.3    Sadoff, J.C.4    Shafferman, A.5
  • 218
    • 46249127253 scopus 로고    scopus 로고
    • Identifying gene-disease associations using centrality on a literature mined gene-interaction network
    • zgr A., Vu T., Erkan G., Radev D. R., Identifying gene-disease associations using centrality on a literature mined gene-interaction network Bioinformatics 2008 24 13 i277 i285
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Zgr, A.1    Vu, T.2    Erkan, G.3    Radev, D.R.4
  • 219
  • 220
    • 64749112680 scopus 로고    scopus 로고
    • The role of IFN- Elispot assay in HIV vaccine research
    • Streeck H., Frahm N., Walker B. D., The role of IFN- Elispot assay in HIV vaccine research Nature Protocols 2009 4 4 461 469
    • (2009) Nature Protocols , vol.4 , Issue.4 , pp. 461-469
    • Streeck, H.1    Frahm, N.2    Walker, B.D.3
  • 221
    • 34248655973 scopus 로고    scopus 로고
    • Correlates of immune protection from tuberculosis
    • DOI 10.2174/156652407780598520
    • Fletcher H. A., Correlates of immune protection from tuberculosis Current Molecular Medicine 2007 7 3 319 325 (Pubitemid 46767789)
    • (2007) Current Molecular Medicine , vol.7 , Issue.3 , pp. 319-325
    • Fletcher, H.A.1
  • 223
    • 0034868617 scopus 로고    scopus 로고
    • Induction of specific cytotoxic lymphocytes in mice vaccinated with Brucella abortus RB51
    • DOI 10.1128/IAI.69.9.5502-5508.2001
    • He Y., Vemulapalli R., Zeytun A., Schurig G. G., Induction of specific cytotoxic lymphocytes in mice vaccinated with Brucella abortus RB51 Infection and Immunity 2001 69 9 5502 5508 (Pubitemid 32786485)
    • (2001) Infection and Immunity , vol.69 , Issue.9 , pp. 5502-5508
    • He, Y.1    Vemulapalli, R.2    Zeytun, A.3    Schurig, G.G.4
  • 224
    • 14044254746 scopus 로고    scopus 로고
    • Textpresso: An ontology-based information retrieval and extraction system for biological literature
    • ARTICLE E309
    • Mller H. M., Kenny E. E., Sternberg P. W., Textpresso: an ontology-based information retrieval and extraction system for biological literature PLoS Biology 2004 2 11, article e309
    • (2004) PLoS Biology , vol.2 , Issue.11
    • Mller, H.M.1    Kenny, E.E.2    Sternberg, P.W.3
  • 225
    • 78651282658 scopus 로고    scopus 로고
    • Protegen: A web-based protective antigen database and analysis system
    • Yang B., Sayers S., Xiang Z., He Y., Protegen: a web-based protective antigen database and analysis system Nucleic Acids Research 2011 39 supplement 1 D1073 D1078
    • (2011) Nucleic Acids Research , vol.39 , Issue.SUPPL. 1
    • Yang, B.1    Sayers, S.2    Xiang, Z.3    He, Y.4
  • 226
    • 75549090745 scopus 로고    scopus 로고
    • AntigenDB: An immunoinformatics database of pathogen antigens
    • Ansari H. R., Flower D. R., Raghava G. P. S., AntigenDB: an immunoinformatics database of pathogen antigens Nucleic Acids Research 2009 38 1 D847 D853
    • (2009) Nucleic Acids Research , vol.38 , Issue.1
    • Ansari, H.R.1    Flower, D.R.2    Raghava, G.P.S.3
  • 232
    • 68149114322 scopus 로고    scopus 로고
    • Moving candidate vaccines into development from research: Lessons from HIV
    • Sullivan M., Moving candidate vaccines into development from research: lessons from HIV Immunology and Cell Biology 2009 87 5 366 370
    • (2009) Immunology and Cell Biology , vol.87 , Issue.5 , pp. 366-370
    • Sullivan, M.1
  • 233
    • 66949146943 scopus 로고    scopus 로고
    • World Malaria Day 2009: What malaria knows about the immune system that immunologists still do not
    • Pierce S. K., Miller L. H., World Malaria Day 2009: what malaria knows about the immune system that immunologists still do not Journal of Immunology 2009 182 9 5171 5177
    • (2009) Journal of Immunology , vol.182 , Issue.9 , pp. 5171-5177
    • Pierce, S.K.1    Miller, L.H.2
  • 234
    • 33947505235 scopus 로고    scopus 로고
    • A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes
    • DOI 10.1007/s12038-007-0004-5
    • Bhasin M., Raghava G. P. S., A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes Journal of Biosciences 2007 32 1 31 42 (Pubitemid 46465755)
    • (2007) Journal of Biosciences , vol.32 , Issue.1 , pp. 31-42
    • Bhasin, M.1    Raghava, G.P.S.2
  • 235
    • 33645472169 scopus 로고    scopus 로고
    • EpiJen: A server for multistep T cell epitope prediction
    • Doytchinova I. A., Guan P., Flower D. R., EpiJen: a server for multistep T cell epitope prediction BMC Bioinformatics 2006 7, article 131
    • (2006) BMC Bioinformatics , vol.7131
    • Doytchinova, I.A.1    Guan, P.2    Flower, D.R.3
  • 236
    • 18744368784 scopus 로고    scopus 로고
    • EPIMHC: A curated database of MHC-binding peptides for customized computational vaccinology
    • DOI 10.1093/bioinformatics/bti269
    • Reche P. A., Zhang H., Glutting J. P., Reinherz E. L., EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology Bioinformatics 2005 21 9 2140 2141 (Pubitemid 40668071)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2140-2141
    • Reche, P.A.1    Zhang, H.2    Glutting, J.-P.3    Reinherz, E.L.4
  • 237
    • 69749108374 scopus 로고    scopus 로고
    • Immunoinformatic comparison of T-cell epitopes contained in novel swine-origin influenza A (H1N1) virus with epitopes in 2008-2009 conventional influenza vaccine
    • De Groot A. S., Ardito M., McClaine E. M., Moise L., Martin W. D., Immunoinformatic comparison of T-cell epitopes contained in novel swine-origin influenza A (H1N1) virus with epitopes in 2008-2009 conventional influenza vaccine Vaccine 2009 27 42 5740 5747
    • (2009) Vaccine , vol.27 , Issue.42 , pp. 5740-5747
    • De Groot, A.S.1    Ardito, M.2    McClaine, E.M.3    Moise, L.4    Martin, W.D.5
  • 240
    • 38849139819 scopus 로고    scopus 로고
    • Efficient peptide-MHC-I binding prediction for alleles with few known binders
    • DOI 10.1093/bioinformatics/btm611
    • Jacob L., Vert J. P., Efficient peptide-MHC-I binding prediction for alleles with few known binders Bioinformatics 2008 24 3 358 366 (Pubitemid 351189011)
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 358-366
    • Jacob, L.1    Vert, J.-P.2
  • 241
    • 1342288007 scopus 로고    scopus 로고
    • SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence
    • DOI 10.1093/bioinformatics/btg424
    • Bhasin M., Raghava G. P. S., SVM based method for predicting HLA- DRB1 0401 binding peptides in an antigen sequence Bioinformatics 2004 20 3 421 423 (Pubitemid 38262776)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 421-423
    • Bhasin, M.1    Raghava, G.P.S.2
  • 242
    • 7944237425 scopus 로고    scopus 로고
    • MHCPred: Bringing a quantitative dimension to the online prediction of MHC binding
    • Guan P., Doytchinova I. A., Zygouri C., Flower D. R., MHCPred: bringing a quantitative dimension to the online prediction of MHC binding Applied Bioinformatics 2003 2 1 63 66
    • (2003) Applied Bioinformatics , vol.2 , Issue.1 , pp. 63-66
    • Guan, P.1    Doytchinova, I.A.2    Zygouri, C.3    Flower, D.R.4
  • 243
  • 244
    • 10744222046 scopus 로고    scopus 로고
    • Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
    • DOI 10.1034/j.1399-0039.2003.00112.x
    • Buus S., Lauemller S. L., Worning P., Kesmir C., Frimurer T., Corbet S., Fomsgaard A., Hilden J., Holm A., Brunak S., Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach Tissue Antigens 2003 62 5 378 384 (Pubitemid 37345160)
    • (2003) Tissue Antigens , vol.62 , Issue.5 , pp. 378-384
    • Buus, S.1    Lauemoller, S.L.2    Worning, P.3    Kesmir, C.4    Frimurer, T.5    Corbet, S.6    Fomsgaard, A.7    Hilden, J.8    Holm, A.9    Brunak, S.10
  • 245
    • 70449359806 scopus 로고    scopus 로고
    • NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction
    • Nielsen M., Lund O., NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction BMC Bioinformatics 2009 10, article 1471 296
    • (2009) BMC Bioinformatics , vol.14-71 , pp. 296
    • Nielsen, M.1    Lund, O.2
  • 248
    • 23144443082 scopus 로고    scopus 로고
    • PEPVAC: A web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands
    • Reche P. A., Reinherz E. L., PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands Nucleic Acids Research 2005 33 2 W138 W142
    • (2005) Nucleic Acids Research , vol.33 , Issue.2
    • Reche, P.A.1    Reinherz, E.L.2
  • 249
    • 0033820208 scopus 로고    scopus 로고
    • Structure-based prediction of binding peptides to MHC class i molecules: Application to a broad range of MHC alleles
    • Schueler-Furman O., Altuvia Y., Sette A., Margalit H., Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles Protein Science 2000 9 9 1838 1846
    • (2000) Protein Science , vol.9 , Issue.9 , pp. 1838-1846
    • Schueler-Furman, O.1    Altuvia, Y.2    Sette, A.3    Margalit, H.4
  • 250
    • 34249687092 scopus 로고    scopus 로고
    • POPI: Predicting immunogenicity of MHC class i binding peptides by mining informative physicochemical properties
    • Tung C. W., Ho S. Y., POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties Bioinformatics 2007 23 8 942 949
    • (2007) Bioinformatics , vol.23 , Issue.8 , pp. 942-949
    • Tung, C.W.1    Ho, S.Y.2
  • 251
    • 0037606124 scopus 로고    scopus 로고
    • ProPred1: Prediction of promiscuous MHC class-I binding sites
    • DOI 10.1093/bioinformatics/btg108
    • Singh H., Raghava G. P. S., ProPred1: prediction of promiscuous MHC class-I binding sites Bioinformatics 2003 19 8 1009 1014 (Pubitemid 36675822)
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 1009-1014
    • Singh, H.1    Raghava, G.P.S.2
  • 252
    • 0036137241 scopus 로고    scopus 로고
    • ProPred: Prediction of HLA-DR binding sites
    • Singh H., Raghava G. P. S., ProPred: prediction of HLA-DR binding sites Bioinformatics 2002 17 12 1236 1237 (Pubitemid 34041160)
    • (2002) Bioinformatics , vol.17 , Issue.12 , pp. 1236-1237
    • Singh, H.1    Raghava, G.P.S.2
  • 253
    • 5444249860 scopus 로고    scopus 로고
    • Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles
    • DOI 10.1007/s00251-004-0709-7
    • Reche P. A., Glutting J. P., Zhang H., Reinherz E. L., Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles Immunogenetics 2004 56 6 405 419 (Pubitemid 39359226)
    • (2004) Immunogenetics , vol.56 , Issue.6 , pp. 405-419
    • Reche, P.A.1    Glutting, J.-P.2    Zhang, H.3    Reinherz, E.L.4
  • 254
    • 26444518432 scopus 로고    scopus 로고
    • Prediction of MHC class i binding peptides, using SVMHC
    • Dnnes P., Elofsson A., Prediction of MHC class I binding peptides, using SVMHC BMC Bioinformatics 2002 3, article 25
    • (2002) BMC Bioinformatics , vol.325
    • Dnnes, P.1    Elofsson, A.2
  • 255
  • 256
    • 7944224384 scopus 로고    scopus 로고
    • Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE
    • DOI 10.1016/j.ymeth.2004.06.002, PII S104620230400129X, Bioinformatics in Vaccine Design
    • Bian H., Hammer J., Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE Methods 2004 34 4 468 475 (Pubitemid 39469054)
    • (2004) Methods , vol.34 , Issue.4 , pp. 468-475
    • Bian, H.1    Hammer, J.2
  • 257
    • 32144438832 scopus 로고    scopus 로고
    • SubLoc: A server/client suite for protein subcellular location based on SOAP
    • DOI 10.1093/bioinformatics/bti822
    • Chen H. U., Huang NI., Sun Z., SubLoc: a server/client suite for protein subcellular location based on SOAP Bioinformatics 2006 22 3 376 377 (Pubitemid 43205393)
    • (2006) Bioinformatics , vol.22 , Issue.3 , pp. 376-377
    • Chen, H.1    Huang, N.2    Sun, Z.3
  • 258
    • 19544388127 scopus 로고    scopus 로고
    • PSLpred: Prediction of subcellular localization of bacterial proteins
    • DOI 10.1093/bioinformatics/bti309
    • Bhasin M., Garg A., Raghava G. P. S., PSLpred: prediction of subcellular localization of bacterial proteins Bioinformatics 2005 21 10 2522 2524 (Pubitemid 40731613)
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2522-2524
    • Bhasin, M.1    Garg, A.2    Raghava, G.P.S.3
  • 259
    • 16244398103 scopus 로고    scopus 로고
    • Mimicking cellular sorting improves prediction of subcellular localization
    • DOI 10.1016/j.jmb.2005.02.025
    • Nair R., Rost B., Mimicking cellular sorting improves prediction of subcellular localization Journal of Molecular Biology 2005 348 1 85 100 (Pubitemid 40461842)
    • (2005) Journal of Molecular Biology , vol.348 , Issue.1 , pp. 85-100
    • Nair, R.1    Rost, B.2
  • 260
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • DOI 10.1038/nprot.2007.131, PII NPROT.2007.131
    • Emanuelsson O., Brunak S., von Heijne G., Nielsen H., Locating proteins in the cell using TargetP, SignalP and related tools Nature Protocols 2007 2 4 953 971 (Pubitemid 46745592)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    Von Heijne, G.3    Nielsen, H.4
  • 262
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
    • Chen F., Mackey A. J., Stoeckert C. J., Roos D. S., OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups Nucleic Acids Research 2006 34 D363 368
    • (2006) Nucleic Acids Research , vol.34 , pp. 363-368
    • Chen, F.1    MacKey, A.J.2    Stoeckert, C.J.3    Roos, D.S.4
  • 263
    • 0034786532 scopus 로고    scopus 로고
    • The HMMTOP transmembrane topology prediction server
    • Tusndy G. E., Simon I., The HMMTOP transmembrane topology prediction server Bioinformatics 2001 17 9 849 850 (Pubitemid 32970487)
    • (2001) Bioinformatics , vol.17 , Issue.9 , pp. 849-850
    • Tusnady, G.E.1    Simon, I.2
  • 265
    • 2642587355 scopus 로고    scopus 로고
    • Prediction of transmembrane regions of β-barrel proteins using ANN- and SVM-based methods
    • DOI 10.1002/prot.20092
    • Natt N. K., Kaur H., Raghava G. P. S., Prediction of transmembrane regions of -barrel proteins using ANN- and SVM-based methods Proteins 2004 56 1 11 18 (Pubitemid 38720834)
    • (2004) Proteins: Structure, Function and Genetics , vol.56 , Issue.1 , pp. 11-18
    • Natt, N.K.1    Kaur, H.2    Raghava, G.P.S.3
  • 266
    • 3042678854 scopus 로고    scopus 로고
    • Predicting transmembrane beta-barrels in proteomes
    • DOI 10.1093/nar/gkh580
    • Bigelow H. R., Petrey D. S., Liu J., Przybylski D., Rost B., Predicting transmembrane beta-barrels in proteomes Nucleic Acids Research 2004 32 8 2566 2577 (Pubitemid 38854809)
    • (2004) Nucleic Acids Research , vol.32 , Issue.8 , pp. 2566-2577
    • Bigelow, H.R.1    Petrey, D.S.2    Liu, J.3    Przybylski, D.4    Rost, B.5


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