Application of a priori established gene sets to discover biologically important differential expression in microarray data

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 43, 2005, Pages 15278-15279

  Bild, Andrea ^a,c   Febbo, Phillip George ^a,b,c  

^a DUKE UNIVERSITY   (United States)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

^c DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MYC PROTEIN; RAS PROTEIN; RETINOBLASTOMA PROTEIN;

ACUTE GRANULOCYTIC LEUKEMIA; ACUTE LYMPHOCYTIC LEUKEMIA; ANIMAL EXPERIMENT; ANIMAL MODEL; CANCER GRADING; CELL DIFFERENTIATION; CELL PROLIFERATION; CYTOGENETICS; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENE REPLICATION; GENE SET ENRICHMENT ANALYSIS; GENETIC ANALYSIS; GENETIC VARIABILITY; HEMATOPOIETIC CELL; HUMAN; MOUSE; NONHUMAN; NOTE; PHENOTYPE; PRIORITY JOURNAL; SIGNAL TRANSDUCTION;

GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

ANIMALIA;

EID: 27344456836     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0507477102     Document Type: Note

References (18)

1. Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. & Mesirov, J. P. (2005) Proc. Natl. Acad. Sci. USA 102, 15545-15550.
2. Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
3. Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E. S. & Golub, T. R. (1999) Proc. Natl. Acad. Sci. USA 96, 2907-2912.
4. Spellman, P. T., Sherlock, G., Zhang, M. Q., Iyer, V. R., Anders, K., Eisen, M. B., Brown, P. O., Botstein, D. & Futcher, B. (1998) Mol. Biol. Cell 9, 3273-3297.
5. Iyer, V. R., Eisen, M. B., Ross, D. T., Schuler, G., Moore, T., Lee, J. C., Trent, J. M., Staudt, L. M., Hudson, J., Jr., Boguski, M. S., et al. (1999) Science 283, 83-87.
6. Tusher, V. G., Tibshirani, R. & Chu, G. (2001) Proc. Natl. Acad. Sci. USA 98, 5116-5121.
7. Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., et al. (1999) Science 286, 531-537.
8. Furey, T. S., Cristianini, N., Duffy, N., Bednarski, D. W., Schummer, M. & Haussier, D. (2000) Bioinformatics 16, 906-914.
9. Huang, E., Ishida, S., Pittman, I., Dressman, H., Bild, A., Kloos, M., D'Amico, M., Pestell, R. G., West, M. & Nevins, J. R. (2003) Nat. Genet. 34, 226-230.
10. Black, E. P., Huang, E., Dressman, H., Rempel, R., Laakso, N., Asa, S. L., Ishida, S., West, M. & Nevins, J. R. (2003) Cancer Res. 63, 3716-3723.
11. Rubin, M. A., Zhou, M., Dhanasekaran, S. M., Varambally, S., Barrette, T. R., Sanda, M. G., Pienta, K. J., Ghosh, D. & Chinnaiyan, A. M. (2002) J. Am. Med. Assoc. 287, 1662-1670.
12. van de Vijver, M. J., He, Y. D., van't Veer, L. J., Dai, H., Hart, A. A., Voskuil, D. W., Schreiber, G. J., Peterse, J. L., Roberts, C., Marton, M. J., et al. (2002) N. Engl. J. Med. 347, 1999-2009.
13. Wright, G., Tan, B., Rosenwald, A., Hurt, E. H., Wiestner, A. & Staudt, L. M. (2003) Proc. Natl. Acad. Sci. USA 100, 9991-9996.
14. Segal, E., Yelensky, R. & Koller, D. (2003) Bioinformatics 19, Suppl. 1, i273-i282.
15. Mootha, V. K., Lindgren, C. M., Eriksson, K. F., Subramanian, A., Sihag, S., Lehar, J., Puigserver, P., Carlsson, E., Ridderstrale, M., Laurila, E., et al. (2003) Nat. Genet. 34, 267-273.
16. Majumder, P. K., Febbo, P. G., Bikoff, R., Berger, R., Xue, Q., McMahon, L. M., Manola, J., Brugarolas, J., McDonnell, T. J., Golub, T. R., et al. (2004) Nat. Med. 10, 594-601.
17. Sweet-Cordero, A., Mukherjee, S., Subramanian, A., You, H., Roix, J. J., Ladd-Acosta, C., Mesirov, J., Golub, T. R. & Jacks, T. (2005) Nat. Genet. 37, 48-55.
18. Attie, A. D. & Kendziorski, C. M. (2003) Nat. Genet. 34, 244-245.